New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 368554	60 (1.060)	4 (0.070)	4/270	8.0	6.5%	intergenic (‑134/‑57)	mhpR/mhpA	mhp operon transcriptional activator/3‑(3‑hydroxyphenyl)propionate hydroxylase
	?	NC_000913	= 368583	58 (1.080)					intergenic (‑163/‑28)	mhpR/mhpA	mhp operon transcriptional activator/3‑(3‑hydroxyphenyl)propionate hydroxylase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AACAACGTGGTGCACCTGGTGCACATTC‑GGGCATGTTTTGATTGTAGCCGAAAACACCCTTCCTATACTGAGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCAGCCTGCTGTTAACCATAGCGTTCAGGTGGCGATCGCTGGTGCCGGCCCGGTTGGGCTGATGATGGCGAACTATCTCGGCCAGATGGGCA  >  NC_000913/368445‑368725                                                                                                                                            |                                                                                                                                               aacaacGTGGTGCACCTGGTGCAGATTCAGGACAACAAAT‑ATTGTAGCCGAAAACACCCTTCCTATACTCGGCTCACGTGGAAAGGTCATTGACGTGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACAttt                                                                                                                                            >  2:407777/1‑143 (MQ=255) aacaacGTGGTGCACCTGGTGCACATTC‑GGGCATGTTTTGATTGTAGCCGAAAACACCCTTCCTATACTGAGCGCACAATAAAAAATCATTTACAGGTTTTTACCAAAATAAGTTGCGCTTTCCTGTGCGCGCACCGCCtttt                                                                                                                                            >  1:298354/1‑143 (MQ=255)      gaatgtgCACCAGGTGCACATTC‑GGGCATGTTTTGATTGTAGCCGAAAACACCCTTCCTATACTGAGCGCACAATAAAAAATCATTTACATGTTTTTAACCTGATCCGTTGCGCTGTACTGTCCGCGCAACGACGTTTTGTcc                                                                                                                                       >  1:448549/5‑143 (MQ=255)        tggtgCACCTGGTGCACATTC‑GGGCATGTTTTGATTGTAGCCGAAAACACCCTTCCTATACTGAGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGa                                                                                                                                     <  1:169014/143‑1 (MQ=255)                   gTGCACATTC‑GGGCATGTTTTGATTGTAGCCGAAAACACCCTTCCTATACTGAGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTa                                                                                                                          <  1:616750/143‑1 (MQ=255)                    tGCACATTC‑GGGCATGTTTTGATTGTAGCCGAAAACACCCTTCCTATACTGAGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTAc                                                                                                                         <  1:106253/143‑1 (MQ=255)                    tGCACATTC‑GGGCATGTTTTGATTGTAGCCGAAAACACCCTTCCTATACTGAGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTAc                                                                                                                         <  1:213419/143‑1 (MQ=255)                     gCACATTC‑GGGCATGTTTTGATTGTAGCCGAAAACACCCTTCCTATACTGAGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACt                                                                                                                        >  1:74229/1‑143 (MQ=255)                            c‑GGCCATGTTTTGATTGTAGCCGAAAACACCCTTCCTATACTGAGCGCACAATAAAAAATCATTTACATGTTTTTAACAAATTAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATgg                                                                                                                 <  2:453774/143‑1 (MQ=255)                                 cATGTGTTGATGGTAGCCGAAAACACCCTTCCTATACTGAGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAAt                                                                                                             <  1:839124/143‑1 (MQ=255)                                      tttGATTGTAGCCGAAAACACCCTTCCTATACTGAGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATacaac                                                                                                        <  1:585481/143‑1 (MQ=255)                                       ttGATTGTAGCCGAAAACACCCTTCCTATACTGAGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATacaaca                                                                                                       >  1:561313/1‑143 (MQ=255)                                        tGATTGTAGCCGAAAACACCCTTCCTATACTGAGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCCATACAacac                                                                                                      >  1:928320/1‑143 (MQ=255)                                         gATTGTAGCCGAAAACACCCTTCCTATACTGAGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACAcc                                                                                                     <  2:585096/143‑1 (MQ=255)                                          aTTGTAGCCGAAAACACCCTTCCTATACTGAGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAAATACTGAAAAGGCAATACTACAccc                                                                                                    >  2:54464/1‑143 (MQ=255)                                           ttGTAGCCGCAACCCACCTTCCTATACTGAGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCt                                                                                                   <  2:724318/143‑1 (MQ=255)                                           ttGTAGCCGAAAACACCCTTCCTATACTGAGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCt                                                                                                   <  1:602475/143‑1 (MQ=255)                                           ttGTAGCCGAAAACACCCGTCCTATACTTAGAGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATGTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCt                                                                                                   <  2:944679/143‑1 (MQ=255)                                            tGTAGCCGAAAACCCCCTTCCTATACTGGGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTg                                                                                                  <  1:122640/143‑1 (MQ=255)                                               aGCCGAAAACACCCTTCCCATACTGAGCGCAAAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACa                                                                                               <  2:520529/143‑1 (MQ=255)                                                 ccGAAAACACCCTTCCTATACTGAGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACCTc                                                                                             >  1:705169/1‑143 (MQ=255)                                                  cGAAAACACCCTTCCTATACTGAGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACATcc                                                                                            >  2:148208/1‑143 (MQ=255)                                                      gacacCCTTCCTCTACCGAGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCCACACGTGCGGTCAAGTAATGGCAATACAACACCCTGACATCCAGcc                                                                                        <  1:239659/142‑1 (MQ=255)                                                           ccTTCCTATACTGAGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCAGCctgctg                                                                                   <  1:719017/143‑1 (MQ=255)                                                            cTTCCTATACTGAGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCAGCCTGCTGt                                                                                  <  2:341068/143‑1 (MQ=255)                                                            cTTCCTATACTGAGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCAGCCCGCTGt                                                                                  >  1:626797/1‑143 (MQ=255)                                                              tCCTATACTGAGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCAGCCTGCTGTTa                                                                                <  2:413793/143‑1 (MQ=255)                                                               ccTATACTGAGCGCACAATAAAAAATCATATACACATCACTTACATGAGAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGCACTGAAATGGCAATACAACACCCTGACATCCAGCCTGCCGCTaa                                                                               >  2:992818/1‑143 (MQ=255)                                                                 tataCTGAGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTGGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGACAATACAACAACCTGACATCCAGCCTGCTGTTAAcc                                                                             >  2:573851/1‑143 (MQ=255)                                                                    aCTGAGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCTCGCAACGACATTTTGTCCGAGGCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCAGCCTGCTGTTAACCATa                                                                          <  2:180517/143‑1 (MQ=255)                                                                    aCTGAGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCAGCCTGCTGTTAACCATa                                                                          <  1:574414/143‑1 (MQ=255)                                                                      tGAGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCAGCCTGCTGTTAACCATAGc                                                                        >  2:768681/1‑143 (MQ=255)                                                                          cgcACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCAGCCTGCTGTTAACCATAGAGTTc                                                                    >  1:896898/1‑143 (MQ=255)                                                                              caATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACACTTTGTCCGAGTCGTGCGGTACTGCCATGGCACTACACCACCCTGACATCCAGCCTGCTGTTAACCATAGCGGTGAGGt                                                                >  1:208317/1‑143 (MQ=255)                                                                               aaTAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCTGAGTCGTGAGGTACTGAAATGGCAATACAACACCCGGACATCCAGCGTGCTGTTAACCATAGCGTTCAGGTg                                                               >  2:541606/1‑143 (MQ=255)                                                                               aaTAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCAGCCTGCTGTTAACCCTCGCGTTCCGGTg                                                               >  1:189775/1‑143 (MQ=255)                                                                               aaTAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCAGCCTGCTGTTAACCATAGCGTTCAGGTg                                                               >  1:823457/1‑143 (MQ=255)                                                                                aTAAAAAATCATTTACAGGTGTTGAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCAGCCTGCTGTTAACCATAGCGTTCAGGCgg                                                              <  2:413374/143‑1 (MQ=255)                                                                                  aaaaaaTCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCAGCCTGCTGTTAACCATAGCGTTCAGGTGGCg                                                            >  1:901082/1‑143 (MQ=255)                                                                                    aaaaTCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTAGTCGGAGTCGTGAGGTACTGAAATGGCAATACAACACCGTGACATCCAGCCTGCTGTTAACCAAAGCGATCGGGGGGCGag                                                          >  2:293987/1‑142 (MQ=255)                                                                                         cATTTACACGTCTCTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACTACACTTTCTCCGCGCCTTGAGGTACTGAAATGGCAATACAACACCCTGACATCCAGCCTGCTGTTAACCATAGCGTTCAGGTGGCGATCGCTg                                                     <  1:376116/143‑1 (MQ=255)                                                                                          aTTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACGACACCCTGACATCCAGCCTGCTGTTAACCATAGCGTTCAGGTGGCGATCGCTgg                                                    <  1:148208/143‑1 (MQ=255)                                                                                           tttACTTGTCTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACCTTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCAGCCTGCTGTTAACCATAGCGTTCAGGTGGCGATCGCTGGt                                                   <  1:847338/143‑1 (MQ=255)                                                                                           tttACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCAGCCTGCTGTTAACCATAGCGTTCGGGTGGCGCTCggcggt                                                   >  1:780946/1‑138 (MQ=255)                                                                                             tACATGTTTTTAACAAAATACTTTGCGCTGTACTGTTCGCGCAACGACATTTTCTCCGAGTCTTGACGTACTGAAATGGCAATACAACACCCTGACATCCAGCCTGCTGTTAACCATAGCGTTCAGGTGGCGATCGCTGGTGc                                                 <  2:53275/143‑1 (MQ=255)                                                                                                aTGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCAGCCTGCTGTTAACCATAGCGTTCAGGTGGCGATCGCTGGTGCCgg                                              >  1:69139/1‑143 (MQ=255)                                                                                                          cAAAATGAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACCTCCAGCCTGCTGTTAACCATAGCGTTCAGGTGGCGATCGCTGGTGCCGGCCCGGTTggg                                    <  2:226712/143‑1 (MQ=255)                                                                                                          cAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCAGCCTGCTGTTAACCATAGCGTTCAGGTGGCGATCGCTGGTGCCGGCCCGGTTggg                                    <  2:148874/143‑1 (MQ=255)                                                                                                          cAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCAGCCTGCTGTTAACCATAGCGTTCAGGTGGCGATCGCTGGTGCCGGCCCGGTTggg                                    <  1:283138/143‑1 (MQ=255)                                                                                                          cAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCAGCCTGCTGTTAACCATAGCGTTCAGGTGGCGATCGCTGGTGCCGGCCCGGTTggg                                    <  1:324226/143‑1 (MQ=255)                                                                                                          cAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACAATTTGTCCGAGTCGTGAGGTACTGAAATGGCAAGACAACACCCTGACATCCAGCCTGCTGTTAACCATAGCGTTCAGGTGGCGATCGCTGGTGCCGGCCCGGGTgcg                                    >  1:837016/1‑141 (MQ=255)                                                                                                               tAAGTTGCGCTGTACTGTGCGCGCAACGACAATTCGTGCGAGGCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCAGCCTGCTGTTAACCATAGCGTTCAGGTGGCGATCGCTGGTGCCGGCCCGGTTGGGCtgat                               <  1:512980/143‑1 (MQ=255)                                                                                                                   ctGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCAGCCTGCTGTTAACCATAGCGTTCAGGTGGCGATCGCTGGTGCCGGCCCGGTTGGGCTGatgatg                           <  1:872833/142‑1 (MQ=255)                                                                                                                      cgcTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCAGCCTGCTGTTAACCATAGCGTTCAGGTGGCGATCGCTGGTGCCGGCCCGGTTGGGCTGATGATGGCg                        >  1:890263/1‑143 (MQ=255)                                                                                                                           tACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCAGCCTGCTGTTAACCATAGCGTTCAGGTGGCGATCGCTGGCGCCGGCCCGGTTGGGCTGGTGCGGGCgcatca                   >  1:412418/1‑138 (MQ=255)                                                                                                                           tACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATAAAACACTCAGACATCCAGCCTGCTGTTAACCATACCGTTCAGGTGGCGATCGCTGGTGCCGGCTCAGATGGGATGATGATGGCGAAcaa                   >  1:329707/1‑141 (MQ=255)                                                                                                                             cTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTCCTGACATGGCAATACAACACCCTGACATCCAGCCTGCTGTTAACCATAGCGTTCAGGTGGCGATCGCCGGTGCCGGCCCGGTGCGGCTGATGATGGCGAACTacc                 >  2:413995/1‑141 (MQ=255)                                                                                                                                tgCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCAGCCTGCTGTTAACCATAGCGTTCAGGTGGCGATCGCTGGTGCCGGCCCGCTTGGGCTGGTGATGGCGAACCATCTCg              >  1:163842/1‑143 (MQ=255)                                                                                                                                  gccgcAACGACATTGTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCAGCCTGCTGTTAACCATAGCGTTCAGGTGGCGATCGCTGGTGCCGGCCCGGTTGGGCTGATGATGGCGAACTATCTCGGc            <  2:69139/141‑1 (MQ=255)                                                                                                                                            cATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCAGCCTGCTGTTAACCATAGCGTTCAGGTGGCGATCGCTGGTGCCGGCCCGGTTGGGCTGATGATGGCGAACCATCTCGGCCAGATGGGCa  >  1:147579/1‑143 (MQ=255)                                                                                                                                            |                                                                                                                                               AACAACGTGGTGCACCTGGTGCACATTC‑GGGCATGTTTTGATTGTAGCCGAAAACACCCTTCCTATACTGAGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCAGCCTGCTGTTAACCATAGCGTTCAGGTGGCGATCGCTGGTGCCGGCCCGGTTGGGCTGATGATGGCGAACTATCTCGGCCAGATGGGCA  >  NC_000913/368445‑368725

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.