Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 3,815,859 Δ82 bp [rph][rph] [rph], [rph]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 3815859 3815940 82 65 [0] [0] 64 [rph]–[rph] [rph],[rph]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 38158580 (0.000)60 (1.060) 46/264 0.2 100% pseudogene (24/48 nt) rph ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH
?NC_000913 3815941 = 0 (0.000)pseudogene (609/669 nt) rph ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH

ACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCT  >  NC_000913/3815799‑3816082
                                                                                                                                              |                                                                                                                                             
acgcctgcttgctaagcgcaaattcaacacactggcgctgatatggtgtcatgccttcgctcctcatcttacttttctacagacaaaaaaacggcgactcatcagtcgccttaaaaatcagtttgccagcgccgcctcctgcc                                                                                                                                               <  1:152423‑M2/1‑1 (MQ=255)
acacctgcttgctaaacgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttggcaccgccgccttctgcc                                                                                                                                               >  2:797662‑M2/143‑143 (MQ=255)
  acctgcttgcgaagcgacaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaacaggcgcctcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGt                                                                                                                                             <  2:456741‑M2/3‑1 (MQ=255)
     tgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaatgcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTccc                                                                                                                                          <  1:701215‑M2/6‑1 (MQ=255)
          gctaatcgcaaattcgataagttggtgctgttatgttttcatgtcttcgctcctcatcttacttttctacagacaaaaaaaaggcgcctcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCa                                                                                                                                     <  2:1100642‑M2/11‑1 (MQ=255)
          gctaagcggaaagtcaataggctggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCa                                                                                                                                     <  1:29775‑M2/11‑1 (MQ=255)
           ctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgcctcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCAc                                                                                                                                    >  2:435830‑M2/132‑143 (MQ=255)
           ctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCAc                                                                                                                                    >  1:590974‑M2/132‑143 (MQ=255)
             aagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACtt                                                                                                                                  <  1:496543‑M2/14‑1 (MQ=255)
               gcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttaactacagacacaaaaaaggcgactcatcagtcgcctttaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTCCa                                                                                                                                >  1:42165‑M2/128‑143 (MQ=255)
                cgcaaagtcaataaacgggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCaa                                                                                                                               <  2:300060‑M2/17‑1 (MQ=255)
                 gcaaatttaataaacgtgcgcggatatgatttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAat                                                                                                                              <  2:908429‑M2/18‑1 (MQ=255)
                 gcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAat                                                                                                                              >  1:883491‑M2/126‑143 (MQ=255)
                   aaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccctctgcCGCCCCCTGAACTTCActga                                                                                                                            >  2:275077‑M2/124‑143 (MQ=255)
                    aattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAatgat                                                                                                                           <  1:484623‑M2/21‑1 (MQ=255)
                      ttcaataagctttcgctgatatagtttcatgccttcgctcctcatcttactgttcaacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATgc                                                                                                                         <  1:357318‑M2/23‑1 (MQ=255)
                         aataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagtcaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttatgcCGTCCCCTGCACCTCAATGATGCGcc                                                                                                                      >  2:416571‑M2/118‑143 (MQ=255)
                          ataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccatctacCGTACCCTGAACTTCAATGAAGCGccc                                                                                                                     >  1:1055074‑M2/117‑143 (MQ=255)
                                tggcgctgatatggtttcatgccttcgcgcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTc                                                                                                               <  2:687208‑M2/33‑1 (MQ=255)
                                 tggcgctgatatggtgtcatgccttcgctcctcatcttacttttcttcagacaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCg                                                                                                              <  1:1020249‑M2/34‑1 (MQ=255)
                                 ggcgctggtatggtttcatgccttcgctcctcgtcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgtcttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCg                                                                                                              <  2:888819‑M2/34‑1 (MQ=255)
                                 ggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCg                                                                                                              <  2:96640‑M2/34‑1 (MQ=255)
                                 ggcgctgatatggtttcatgccttcgctcctcatcttacgtttctacagacaagaacaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCg                                                                                                              <  2:393057‑M2/34‑1 (MQ=255)
                                  gcgctgttttgttttcattccttcgctcgtcatctttcttgtctacggacaaaaaaaaggcgactcatcagtcgccttaaacatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCgg                                                                                                             <  2:930718‑M2/35‑1 (MQ=255)
                                   cgctgatatggtttcatgccttcgctcctcatcttacttttctatagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGt                                                                                                            <  1:231875‑M2/36‑1 (MQ=255)
                                   cgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGt                                                                                                            <  2:590974‑M2/36‑1 (MQ=255)
                                       gatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGtcatc                                                                                                        >  1:526619‑M2/104‑143 (MQ=255)
                                        atatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGtcatca                                                                                                       <  1:366817‑M2/41‑1 (MQ=255)
                                          atggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACt                                                                                                     >  2:556395‑M2/101‑143 (MQ=255)
                                             gtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACg                                                                                                  >  1:1097789‑M2/98‑143 (MQ=255)
                                             gtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACg                                                                                                  >  2:711715‑M2/98‑143 (MQ=255)
                                                   tgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATg                                                                                            <  2:23328‑M2/52‑1 (MQ=255)
                                                    gccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGt                                                                                           >  1:900351‑M2/91‑143 (MQ=255)
                                                    gccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaataagatagacagcaccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATAactaggtacgagt                                                                                           >  1:291511‑M2/91‑137 (MQ=255)
                                                       ttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCgg                                                                                        >  2:188932‑M2/88‑143 (MQ=255)
                                                              ctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGc                                                                                 <  1:881327‑M2/63‑1 (MQ=255)
                                                                    tttcttttctacacaaaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCaga                                                                           <  1:457508‑M2/69‑1 (MQ=255)
                                                                    ttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCaga                                                                           <  2:261075‑M2/69‑1 (MQ=255)
                                                                      acttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGTTCTCTGCGGCAGAGt                                                                         >  1:652979‑M2/73‑143 (MQ=255)
                                                                        ttttctacagacaaaaaaaaggcgactcatccgtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCCCTACGTTCATCTCTGTACCTGCGGCAGCGTCt                                                                       >  1:643620‑M2/71‑143 (MQ=255)
                                                                        ttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCCCTACGTTCACGTCGGTCTCCGCGGCAGAGTCt                                                                       >  2:957546‑M2/71‑143 (MQ=255)
                                                                        ttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCt                                                                       >  1:53368‑M2/71‑143 (MQ=255)
                                                                        ttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTGCAATGATGCGCCCGTCTTCAGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCt                                                                       >  1:379051‑M2/71‑143 (MQ=255)
                                                                           tctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATCTTGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCa                                                                    <  1:207752‑M2/76‑1 (MQ=255)
                                                                             tacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCAGTCTCTTCTGCCGAGTCTTCAAc                                                                  >  1:375492‑M2/66‑143 (MQ=255)
                                                                              acagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCTCTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCCGCGGCCGAGTCTTCCACg                                                                 >  1:697962‑M2/65‑143 (MQ=255)
                                                                              acagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTAGGTCTCTCCGGCAGAGTCTTCAACg                                                                 >  2:496816‑M2/65‑143 (MQ=255)
                                                                               cagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGGCATCACTACGTTCATGTCGGTCTCTGCGGCAGCGCATCCAACGt                                                                >  2:453881‑M2/64‑143 (MQ=255)
                                                                                  acaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttcttcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGCGTCTTCAACGTAtt                                                             >  2:551846‑M2/61‑143 (MQ=255)
                                                                                        aaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCCTCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTCTTCCAGAt                                                       >  1:609725‑M2/55‑143 (MQ=255)
                                                                                          cgggcggcccatcagtcgccctaaaaatcagtttgccagcgccgccttctgcCGGCCCCTGCACTTCAATGATGCGCCCGTCTGCGGTCATCACTACGTTCATGTCGCTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCg                                                     <  2:947769‑M2/91‑1 (MQ=255)
                                                                                           aggcgactgatgagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCCGCAGAGTCTTCAACGTATTCCAAATAGc                                                    >  1:675723‑M2/52‑143 (MQ=255)
                                                                                           aggcgactgatgagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGGCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGCCTTCAACGTATTCCAGATCGc                                                    >  1:357838‑M2/52‑143 (MQ=255)
                                                                                              cttgttatctgtcgccttaaaaatcagtttgccagcgccgcctcctgcAGTCCCCTGCACCTCAAGGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCaaa                                                 <  1:736764‑M2/95‑1 (MQ=255)
                                                                                                acgcagcagtcgccttaaaaatcagtgtgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAAcc                                               <  1:104535‑M2/97‑1 (MQ=255)
                                                                                                                   aatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATCTCGGTCTCTGCGGCAGAGTCCTCAACGTAATCCAGATCGCAAACCGCTTCGCCGTTCACAACTc                            >  2:897701‑M2/28‑143 (MQ=255)
                                                                                                                   aaacagtgtgccagcgccgccttctgcCGTCCCCTGCACTTCACTGATGCGCCCGTCTTCGGTCATCACAACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGCTCGCAAACCGCTTCGCCGTTCACAATTc                            <  1:377030‑M2/116‑1 (MQ=255)
                                                                                                                                gcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGGCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTGACCGTTCCGACAGAAACTGc               >  1:199738‑M2/15‑143 (MQ=255)
                                                                                                                                gcgccgccatctgcCGTCCCCGGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGc               <  1:188601‑M2/129‑1 (MQ=255)
                                                                                                                                   ccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGGCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCCCAATTCCGACACAGACCGCGGc            >  2:357563‑M2/12‑143 (MQ=255)
                                                                                                                                    cgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCt           <  1:852183‑M2/133‑1 (MQ=255)
                                                                                                                                    cgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTCCACAATTCCGGCAGAAACCGCGGCt           >  1:24640‑M2/11‑143 (MQ=255)
                                                                                                                                        ttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCa       <  2:197804‑M2/137‑1 (MQ=255)
                                                                                                                                             cCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCt  <  2:33910‑M2/142‑1 (MQ=255)
                                                                                                                                              |                                                                                                                                             
ACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCT  >  NC_000913/3815799‑3816082

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: