Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 257,908 Δ776 bp [crl] [crl]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 257908–258673 258683 11–776 55 [0] [0] 55 [crl] [crl]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 2579070 (0.000)53 (1.310) 46/268 0.0 100% intergenic (+8/‑769) crl/crl pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers/pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers
?NC_000913 258684 = 0 (0.000)pseudogene (9/331 nt) crl pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers

TTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCG  >  NC_000913/257768‑258048
                                                                                                                                           |                                                                                                                                             
ttAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagt                                                                                                                                            <  1:182971‑M1/143‑4 (MQ=255)
 tAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGCTAGCAATGACGTTACCGCGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCCCTAAGCCCGTATATTCGTGAAGGTAagag                                                                                                                                           >  2:583627‑M1/1‑139 (MQ=255)
  aaaaaTTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgc                                                                                                                                          >  2:327197‑M1/1‑138 (MQ=255)
           cTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCGGTATATTCGGGAAGGTAagtgcaaagataat                                                                                                                                 >  1:34286‑M1/1‑129 (MQ=255)
           cTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATCCGTGAAGCTAagagcaaagatcat                                                                                                                                 >  2:445018‑M1/1‑129 (MQ=255)
              aaTTTTGCCAACTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcga                                                                                                                              <  2:538308‑M1/143‑18 (MQ=255)
                     ccAATTGGGTAAAACAGGTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttt                                                                                                                       <  2:15352‑M1/143‑25 (MQ=255)
                       aaTTGGGAAAAAGAGGTGCATCACAACAGGAGAGAGCAAGGACGTGACCGAGGGGAGACCCGAAGAGCAGATTGCTCAAAAAATTTACCGCACTAGGCCCGTATATTCGTTAAGGTAagtgcaaagataatcgattctttttc                                                                                                                     <  1:69174‑M1/143‑27 (MQ=255)
                        aTTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcg                                                                                                                    <  2:261454‑M1/143‑28 (MQ=255)
                          ctgGTTAAACAGTTGCATCAAAACAGGAGATAGCAATGCCGGTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATCTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgat                                                                                                                  <  2:29366‑M1/142‑30 (MQ=255)
                           tagtaAAACAGTGGAATCATAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGCTCCAAAAATTTACCGCACTAGGCCCGTATATTCGTGAATGTAagtgcaaagataatcgattctttttcgatt                                                                                                                 <  1:620552‑M1/141‑31 (MQ=255)
                             gTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGGGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTCTATTCGTGAAGGTAagtgcaaagataatcgattctctttcaattac                                                                                                               >  2:348557‑M1/1‑111 (MQ=255)
                                 aaCAGGTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTAACCGCACTAGGCCCGTATATTCGTGAAGGTAagttcaaagataatcgattctttttcgattgtctgg                                                                                                           <  1:613411‑M1/143‑37 (MQ=255)
                                   cAGTTGGATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggct                                                                                                         <  2:2078‑M1/143‑39 (MQ=255)
                                   cAGTTGCAGCACAACAGGAGATAGCAATGACGTTACCGAGTGGACCCCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAattgcaaagataatcgattctttttcgattgtctggct                                                                                                         <  1:507344‑M1/143‑39 (MQ=255)
                                    aGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGCATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgactgtctggctg                                                                                                        >  2:497517‑M1/1‑104 (MQ=255)
                                      ttGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgta                                                                                                      >  1:672176‑M1/1‑102 (MQ=255)
                                      ttGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggatgta                                                                                                      >  1:351342‑M1/1‑102 (MQ=255)
                                          aTCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcg                                                                                                  >  1:436607‑M1/1‑98 (MQ=255)
                                          aTCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcc                                                                                                  >  2:449728‑M1/1‑98 (MQ=255)
                                            cacaACAGGAGATAGCAAGGACGTTACCGAGGGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGGACGAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtc                                                                                                <  1:509701‑M1/143‑48 (MQ=255)
                                              caacaGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaa                                                                                              <  2:358135‑M1/143‑50 (MQ=255)
                                                  aGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtg                                                                                          >  1:51202‑M1/1‑90 (MQ=255)
                                                             aTGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGCAGGTAcgtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcacc                                                                               >  1:188003‑M1/1‑79 (MQ=255)
                                                                   ttcccgagTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagttcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagt                                                                         <  1:222622‑M1/140‑71 (MQ=255)
                                                                   ttACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagt                                                                         <  2:365146‑M1/143‑71 (MQ=255)
                                                                              acacCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattct                                                              <  1:218713‑M1/143‑82 (MQ=255)
                                                                                 cccGAAGAGCAGAATGAACAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgagtctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggg                                                           <  1:286493‑M1/143‑85 (MQ=255)
                                                                                  ccGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctgggg                                                          >  1:300731‑M1/1‑58 (MQ=255)
                                                                                       gagCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggt                                                     <  2:51202‑M1/143‑91 (MQ=255)
                                                                                        agCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattccttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtg                                                    <  1:779164‑M1/143‑92 (MQ=255)
                                                                                          cAGATTGATCAAAAGATTTAGCGCACGAGGACCGTATAGTCGTGAATGTAagtgcaaagataatcgattttttttggattgtctggctgtaggcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtgga                                                  <  1:348557‑M1/143‑94 (MQ=255)
                                                                                          cAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccgggagtgggtgaattctggggctggtgga                                                  >  1:59058‑M1/1‑50 (MQ=255)
                                                                                           aGATTGATCAAAGAATTTACCGCACTAGGCCCGTATATTCGTGAAGGGAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggat                                                 <  2:735647‑M1/143‑95 (MQ=255)
                                                                                                  tCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgcatcctctgccgggtggatggcgctg                                          >  2:305108‑M1/1‑42 (MQ=255)
                                                                                                   cAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctgg                                         <  1:16177‑M1/143‑103 (MQ=255)
                                                                                                     ataaattTTCCGTACTAGGTCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaa                                       <  1:373331‑M1/141‑105 (MQ=255)
                                                                                                     aaaaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaa                                       >  2:40029‑M1/1‑39 (MQ=255)
                                                                                                     aaaaaTTTACCGAACTAAGAACGTGTATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtggattctggggatggtggatggagctggaa                                       >  2:96905‑M1/1‑39 (MQ=255)
                                                                                                       aaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtccgtgaattctggcgctcgtggatcgagcggggatc                                     >  2:496987‑M1/1‑37 (MQ=255)
                                                                                                                  aCTAGGCCCGTATATTCGTGGTGGTGagcgcaaagataatcgattcgttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatccc                          <  1:106105‑M1/143‑118 (MQ=255)
                                                                                                                    tcggccCGGATATGCGTGAAGGTAactgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgt                        <  1:547376‑M1/141‑120 (MQ=255)
                                                                                                                       gCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgtttt                     <  1:761108‑M1/143‑123 (MQ=255)
                                                                                                                       gCCCGGATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtggaaccggcaccggaagtgcgggaattctggggctggtggagggagctggaagcgcaggaatcccgtttt                     >  1:338217‑M1/1‑21 (MQ=255)
                                                                                                                        cccGTAGATTCGTGGAGGTAagtgcaaagctgctcggttctttttcgattgtctggctgtatgcgtcaacgtggacccggcaccggaagggcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgtttta                    <  2:230006‑M1/143‑124 (MQ=255)
                                                                                                                         gcggatattggtGAAGGTAagcgcaaacgtaatcgattcttttttgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttac                   <  2:121330‑M1/139‑125 (MQ=255)
                                                                                                                         ctttctatgcgtgAAGTTAagtgcacagttaatcgattgtttttcgattgtcgggctgtatgtgtcaagggcaaaccggcaccgcaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttac                   <  2:34286‑M1/138‑125 (MQ=255)
                                                                                                                            tataTTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaagcctgcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttaccta                <  2:762464‑M1/143‑128 (MQ=255)
                                                                                                                            tataTTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttaccta                >  1:766478‑M1/1‑16 (MQ=255)
                                                                                                                              ttttcgTGAAGGTAagtgcaaagatactcggtgttttttcgattgtgtggctgtatgcgtcaacgtgaaaccggcaccgggagtgcgtggattctggggctggtggatggagctggaagcgcaggaatcccgttttacctaca              <  2:534515‑M1/141‑130 (MQ=255)
                                                                                                                              tatTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccgcaagtgcgtgaattctgcggctggaggacggagctggacgcgcaggaatcccgtctcacctcca              >  2:744436‑M1/1‑14 (MQ=255)
                                                                                                                               atTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctgggggtgggggctggagctgggagcgcaggaatcccgtttgacctacag             >  1:396273‑M1/1‑13 (MQ=255)
                                                                                                                                  cGTGAAGGTAagtgcaaagataatcgattctttttcgattgaagggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagtta          <  1:327197‑M1/143‑134 (MQ=255)
                                                                                                                                     tgaggTAagtgtaaagtttatcgtttctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttacca       <  2:351342‑M1/141‑137 (MQ=255)
                                                                                                                                          tAagtgcaaggataatcgattcgttttcgattgtctggcggtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggtgctggaagcgcaggaatcccgttttacctacagttaccagtttg  <  2:591086‑M1/143‑142 (MQ=255)
                                                                                                                                           |                                                                                                                                             
TTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCG  >  NC_000913/257768‑258048

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.