| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 257,908 | Δ776 bp | [crl] | [crl] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 257908–258673 | 258683 | 11–776 | 55 [0] | [0] 55 | [crl] | [crl] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 257907 | 0 (0.000) | 53 (1.310) | 46/268 | 0.0 | 100% | intergenic (+8/‑769) | crl/crl | pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers/pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers |
| ? | NC_000913 | 258684 = | 0 (0.000) | pseudogene (9/331 nt) | crl | pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers | |||||
TTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCG > NC_000913/257768‑258048 | ttAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagt < 1:182971‑M1/143‑4 (MQ=255) tAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGCTAGCAATGACGTTACCGCGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCCCTAAGCCCGTATATTCGTGAAGGTAagag > 2:583627‑M1/1‑139 (MQ=255) aaaaaTTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgc > 2:327197‑M1/1‑138 (MQ=255) cTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCGGTATATTCGGGAAGGTAagtgcaaagataat > 1:34286‑M1/1‑129 (MQ=255) cTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATCCGTGAAGCTAagagcaaagatcat > 2:445018‑M1/1‑129 (MQ=255) aaTTTTGCCAACTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcga < 2:538308‑M1/143‑18 (MQ=255) ccAATTGGGTAAAACAGGTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttt < 2:15352‑M1/143‑25 (MQ=255) aaTTGGGAAAAAGAGGTGCATCACAACAGGAGAGAGCAAGGACGTGACCGAGGGGAGACCCGAAGAGCAGATTGCTCAAAAAATTTACCGCACTAGGCCCGTATATTCGTTAAGGTAagtgcaaagataatcgattctttttc < 1:69174‑M1/143‑27 (MQ=255) aTTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcg < 2:261454‑M1/143‑28 (MQ=255) ctgGTTAAACAGTTGCATCAAAACAGGAGATAGCAATGCCGGTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATCTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgat < 2:29366‑M1/142‑30 (MQ=255) tagtaAAACAGTGGAATCATAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGCTCCAAAAATTTACCGCACTAGGCCCGTATATTCGTGAATGTAagtgcaaagataatcgattctttttcgatt < 1:620552‑M1/141‑31 (MQ=255) gTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGGGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTCTATTCGTGAAGGTAagtgcaaagataatcgattctctttcaattac > 2:348557‑M1/1‑111 (MQ=255) aaCAGGTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTAACCGCACTAGGCCCGTATATTCGTGAAGGTAagttcaaagataatcgattctttttcgattgtctgg < 1:613411‑M1/143‑37 (MQ=255) cAGTTGGATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggct < 2:2078‑M1/143‑39 (MQ=255) cAGTTGCAGCACAACAGGAGATAGCAATGACGTTACCGAGTGGACCCCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAattgcaaagataatcgattctttttcgattgtctggct < 1:507344‑M1/143‑39 (MQ=255) aGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGCATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgactgtctggctg > 2:497517‑M1/1‑104 (MQ=255) ttGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgta > 1:672176‑M1/1‑102 (MQ=255) ttGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggatgta > 1:351342‑M1/1‑102 (MQ=255) aTCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcg > 1:436607‑M1/1‑98 (MQ=255) aTCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcc > 2:449728‑M1/1‑98 (MQ=255) cacaACAGGAGATAGCAAGGACGTTACCGAGGGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGGACGAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtc < 1:509701‑M1/143‑48 (MQ=255) caacaGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaa < 2:358135‑M1/143‑50 (MQ=255) aGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtg > 1:51202‑M1/1‑90 (MQ=255) aTGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGCAGGTAcgtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcacc > 1:188003‑M1/1‑79 (MQ=255) ttcccgagTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagttcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagt < 1:222622‑M1/140‑71 (MQ=255) ttACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagt < 2:365146‑M1/143‑71 (MQ=255) acacCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattct < 1:218713‑M1/143‑82 (MQ=255) cccGAAGAGCAGAATGAACAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgagtctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggg < 1:286493‑M1/143‑85 (MQ=255) ccGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctgggg > 1:300731‑M1/1‑58 (MQ=255) gagCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggt < 2:51202‑M1/143‑91 (MQ=255) agCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattccttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtg < 1:779164‑M1/143‑92 (MQ=255) cAGATTGATCAAAAGATTTAGCGCACGAGGACCGTATAGTCGTGAATGTAagtgcaaagataatcgattttttttggattgtctggctgtaggcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtgga < 1:348557‑M1/143‑94 (MQ=255) cAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccgggagtgggtgaattctggggctggtgga > 1:59058‑M1/1‑50 (MQ=255) aGATTGATCAAAGAATTTACCGCACTAGGCCCGTATATTCGTGAAGGGAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggat < 2:735647‑M1/143‑95 (MQ=255) tCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgcatcctctgccgggtggatggcgctg > 2:305108‑M1/1‑42 (MQ=255) cAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctgg < 1:16177‑M1/143‑103 (MQ=255) ataaattTTCCGTACTAGGTCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaa < 1:373331‑M1/141‑105 (MQ=255) aaaaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaa > 2:40029‑M1/1‑39 (MQ=255) aaaaaTTTACCGAACTAAGAACGTGTATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtggattctggggatggtggatggagctggaa > 2:96905‑M1/1‑39 (MQ=255) aaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtccgtgaattctggcgctcgtggatcgagcggggatc > 2:496987‑M1/1‑37 (MQ=255) aCTAGGCCCGTATATTCGTGGTGGTGagcgcaaagataatcgattcgttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatccc < 1:106105‑M1/143‑118 (MQ=255) tcggccCGGATATGCGTGAAGGTAactgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgt < 1:547376‑M1/141‑120 (MQ=255) gCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgtttt < 1:761108‑M1/143‑123 (MQ=255) gCCCGGATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtggaaccggcaccggaagtgcgggaattctggggctggtggagggagctggaagcgcaggaatcccgtttt > 1:338217‑M1/1‑21 (MQ=255) cccGTAGATTCGTGGAGGTAagtgcaaagctgctcggttctttttcgattgtctggctgtatgcgtcaacgtggacccggcaccggaagggcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgtttta < 2:230006‑M1/143‑124 (MQ=255) gcggatattggtGAAGGTAagcgcaaacgtaatcgattcttttttgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttac < 2:121330‑M1/139‑125 (MQ=255) ctttctatgcgtgAAGTTAagtgcacagttaatcgattgtttttcgattgtcgggctgtatgtgtcaagggcaaaccggcaccgcaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttac < 2:34286‑M1/138‑125 (MQ=255) tataTTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaagcctgcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttaccta < 2:762464‑M1/143‑128 (MQ=255) tataTTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttaccta > 1:766478‑M1/1‑16 (MQ=255) ttttcgTGAAGGTAagtgcaaagatactcggtgttttttcgattgtgtggctgtatgcgtcaacgtgaaaccggcaccgggagtgcgtggattctggggctggtggatggagctggaagcgcaggaatcccgttttacctaca < 2:534515‑M1/141‑130 (MQ=255) tatTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccgcaagtgcgtgaattctgcggctggaggacggagctggacgcgcaggaatcccgtctcacctcca > 2:744436‑M1/1‑14 (MQ=255) atTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctgggggtgggggctggagctgggagcgcaggaatcccgtttgacctacag > 1:396273‑M1/1‑13 (MQ=255) cGTGAAGGTAagtgcaaagataatcgattctttttcgattgaagggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagtta < 1:327197‑M1/143‑134 (MQ=255) tgaggTAagtgtaaagtttatcgtttctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttacca < 2:351342‑M1/141‑137 (MQ=255) tAagtgcaaggataatcgattcgttttcgattgtctggcggtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggtgctggaagcgcaggaatcccgttttacctacagttaccagtttg < 2:591086‑M1/143‑142 (MQ=255) | TTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCG > NC_000913/257768‑258048 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |