Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 257,908 Δ776 bp [crl] [crl]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 257908–258673 258683 11–776 55 [0] [0] 55 [crl] [crl]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 2579070 (0.000)53 (1.310) 46/268 0.0 100% intergenic (+8/‑769) crl/crl pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers/pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers
?NC_000913 258684 = 0 (0.000)pseudogene (9/331 nt) crl pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers

CCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTTG  >  NC_000913/258544‑258824
                                                                                                                                            |                                                                                                                                            
ttaaaaatttgctaaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGt                                                                                                                                            <  1:182971‑M2/3‑1 (MQ=255)
 taaaaatttgctaaattttgccaatttggtaaaacagttgcatcacaacaggagctagcaatgacgttaccgcgtggacacccgaagagcagattgatcaaaaaatttaccgccctaagcccgtatattcgtgaaggtaagag                                                                                                                                           >  2:583627‑M2/140‑141 (MQ=255)
  aaaaatttgctaaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGc                                                                                                                                          >  2:327197‑M2/139‑143 (MQ=255)
           ctaaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggccggtatattcgggaaggtaAGTGCAAAGATAAt                                                                                                                                 >  1:34286‑M2/130‑143 (MQ=255)
           ctaaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatatccgtgaagctaAGAGCAAAGATCAt                                                                                                                                 >  2:445018‑M2/130‑143 (MQ=255)
              aattttgccaacttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGa                                                                                                                              <  2:538308‑M2/17‑1 (MQ=255)
                     ccaattgggtaaaacaggtgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCtttt                                                                                                                       <  2:15352‑M2/24‑1 (MQ=255)
                       aattgggaaaaagaggtgcatcacaacaggagagagcaaggacgtgaccgaggggagacccgaagagcagattgctcaaaaaatttaccgcactaggcccgtatattcgttaaggtaAGTGCAAAGATAATCGATTCTTTTTc                                                                                                                     <  1:69174‑M2/26‑1 (MQ=255)
                        atttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCg                                                                                                                    <  2:261454‑M2/27‑1 (MQ=255)
                          ctggttaaacagttgcatcaaaacaggagatagcaatgccggtaccgagtggacacccgaagagcagattgatcaaaaaatctaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGAt                                                                                                                  <  2:29366‑M2/29‑1 (MQ=255)
                           tagtaaaacagtggaatcataacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgctccaaaaatttaccgcactaggcccgtatattcgtgaatgtaAGTGCAAAGATAATCGATTCTTTTTCGAtt                                                                                                                 <  1:620552‑M2/30‑1 (MQ=255)
                             gtaaaacagttgcatcacaacaggagatagcaatgacgttaccgaggggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtctattcgtgaaggtaAGTGCAAAGATAATCGATTCTCTTTCaattac                                                                                                               >  2:348557‑M2/112‑141 (MQ=255)
                                 aacaggtgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaattaaccgcactaggcccgtatattcgtgaaggtaAGTTCAAAGATAATCGATTCTTTTTCGATTGTCTgg                                                                                                           <  1:613411‑M2/36‑1 (MQ=255)
                                   cagttggatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCt                                                                                                         <  2:2078‑M2/38‑1 (MQ=255)
                                   cagttgcagcacaacaggagatagcaatgacgttaccgagtggacccccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaATTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCt                                                                                                         <  1:507344‑M2/38‑1 (MQ=255)
                                    agttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgcatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGACTGTCTGGCTg                                                                                                        >  2:497517‑M2/105‑143 (MQ=255)
                                      ttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTa                                                                                                      >  1:672176‑M2/103‑143 (MQ=255)
                                      ttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGATGTa                                                                                                      >  1:351342‑M2/103‑143 (MQ=255)
                                          atcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATgcc                                                                                                  >  2:449728‑M2/99‑142 (MQ=255)
                                          atcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCg                                                                                                  >  1:436607‑M2/99‑143 (MQ=255)
                                            cacaacaggagatagcaaggacgttaccgaggggacacccgaagagcagattgatcaaaaaatttaccggacgaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTc                                                                                                <  1:509701‑M2/47‑1 (MQ=255)
                                              caacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCaa                                                                                              <  2:358135‑M2/49‑1 (MQ=255)
                                                  aggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTg                                                                                          >  1:51202‑M2/91‑143 (MQ=255)
                                                             atgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgcaggtaCGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCAcc                                                                               >  1:188003‑M2/80‑143 (MQ=255)
                                                                   ttcccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTTCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGt                                                                         <  1:222622‑M2/70‑1 (MQ=255)
                                                                   ttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGt                                                                         <  2:365146‑M2/70‑1 (MQ=255)
                                                                              acacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCt                                                              <  1:218713‑M2/81‑1 (MQ=255)
                                                                                 cccgaagagcagaatgaacaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGAGTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTggg                                                           <  1:286493‑M2/84‑1 (MQ=255)
                                                                                  ccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTgggg                                                          >  1:300731‑M2/59‑143 (MQ=255)
                                                                                       gagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCtggt                                                     <  2:51202‑M2/90‑1 (MQ=255)
                                                                                        agcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCCTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCtggtg                                                    <  1:779164‑M2/91‑1 (MQ=255)
                                                                                          cagattgatcaaaagatttagcgcacgaggaccgtatagtcgtgaatgtaAGTGCAAAGATAATCGATTTTTTTTGGATTGTCTGGCTGTAGGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGtgga                                                  <  1:348557‑M2/93‑1 (MQ=255)
                                                                                          cagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGGAGTGGGTGAATTCTGGGGCTGGtgga                                                  >  1:59058‑M2/51‑143 (MQ=255)
                                                                                           agattgatcaaagaatttaccgcactaggcccgtatattcgtgaagggaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGtggat                                                 <  2:735647‑M2/94‑1 (MQ=255)
                                                                                                  tcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGCATCCTCTGCCGGGTGGATGGCGCTg                                          >  2:305108‑M2/43‑143 (MQ=255)
                                                                                                   caaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTgg                                         <  1:16177‑M2/102‑1 (MQ=255)
                                                                                                     ataaattttccgtactaggtccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGaa                                       <  1:373331‑M2/104‑1 (MQ=255)
                                                                                                     aaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGaa                                       >  2:40029‑M2/40‑143 (MQ=255)
                                                                                                     aaaaatttaccgaactaagaacgtgtattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGGATTCTGGGGATGGTGGATGGAGCTGGaa                                       >  2:96905‑M2/40‑143 (MQ=255)
                                                                                                       aaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTCCGTGAATTCTGGCGCTCGTGGATCgagcggggatc                                     >  2:496987‑M2/38‑139 (MQ=255)
                                                                                                                  actaggcccgtatattcgtggtggtgAGCGCAAAGATAATCGATTCGTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATccc                          <  1:106105‑M2/117‑1 (MQ=255)
                                                                                                                    tcggcccggatatgcgtgaaggtaACTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGt                        <  1:547376‑M2/119‑1 (MQ=255)
                                                                                                                       gcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGtttt                     <  1:761108‑M2/122‑1 (MQ=255)
                                                                                                                       gcccggatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGGAACCGGCACCGGAAGTGCGGGAATTCTGGGGCTGGTGGAGGGAGCTGGAAGCGCAGGAATCCCGtttt                     >  1:338217‑M2/22‑143 (MQ=255)
                                                                                                                        cccgtagattcgtggaggtaAGTGCAAAGCTGCTCGGTTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGGACCCGGCACCGGAAGGGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTa                    <  2:230006‑M2/123‑1 (MQ=255)
                                                                                                                         gcggatattggtgaaggtaAGCGCAAACGTAATCGATTCTTTTTTGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTAc                   <  2:121330‑M2/124‑1 (MQ=255)
                                                                                                                         ctttctatgcgtgaagttaAGTGCACAGTTAATCGATTGTTTTTCGATTGTCGGGCTGTATGTGTCAAGGGCAAACCGGCACCGCAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTAc                   <  2:34286‑M2/124‑1 (MQ=255)
                                                                                                                            tatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAGCCTGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTa                <  2:762464‑M2/127‑1 (MQ=255)
                                                                                                                            tatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTa                >  1:766478‑M2/17‑143 (MQ=255)
                                                                                                                              ttttcgtgaaggtaAGTGCAAAGATACTCGGTGTTTTTTCGATTGTGTGGCTGTATGCGTCAACGTGAAACCGGCACCGGGAGTGCGTGGATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACa              <  2:534515‑M2/129‑1 (MQ=255)
                                                                                                                              tattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGCAAGTGCGTGAATTCTGCGGCTGGAGGACGGAGCTGGACGCGCAGGAATCCCGTCTCACCTCCa              >  2:744436‑M2/15‑143 (MQ=255)
                                                                                                                               attcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGGTGGGGGCTGGAGCTGGGAGCGCAGGAATCCCGTTTGACCTACAg             >  1:396273‑M2/14‑143 (MQ=255)
                                                                                                                                  cgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGAAGGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTa          <  1:327197‑M2/133‑1 (MQ=255)
                                                                                                                                     tgaggtaAGTGTAAAGTTTATCGTTTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCa       <  2:351342‑M2/136‑1 (MQ=255)
                                                                                                                                          taAGTGCAAGGATAATCGATTCGTTTTCGATTGTCTGGCGGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGTGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTTg  <  2:591086‑M2/141‑1 (MQ=255)
                                                                                                                                            |                                                                                                                                            
CCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTTG  >  NC_000913/258544‑258824

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.