New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1207805	4 (0.080)	35 (0.750)	31/252	0.5	85.8%	coding (305/630 nt)	stfP	e14 prophage; uncharacterized protein
	?	NC_000913	= 1209602	8 (0.170)					pseudogene (18/501 nt)	stfE	pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related

AGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1207655‑1207805 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttggtttgggagaaggCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAATGCAATGGTGCCGCTTTTTCTGCTGAAGAATACCCGGAACTGGCAAAGGCTTATCCGACAAATAAATTG  <  NC_000913/1209602‑1209467                                                                                                                                                                                                                                                                                                 gGGCATGCTGTGCCAGCCTGGAGAAGGGGCTGTACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTACGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTG                                                                                                                                                  <  1:340424/142‑1   GCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGG                                                                                                                                                <  1:842099/143‑1    CATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTCACCGAACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGCTATCAAATCGGAAGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTCTGGGA                                                                                                                                               >  2:779254/1‑143       CCGGTTCCAGCCTGTATAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTCTTAAGCCGCAAGAACCCGTTGGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA                                                                                                                                            <  2:887672/143‑1       CCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCCAGAATCCGGTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA                                                                                                                                            >  1:262363/1‑143           TGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAACTCGGATGGCACTGTGCACACGGCTCTCGAAAACCTTGGCCTGGGAGAAGGCT                                                                                                                                        >  2:666123/1‑143                          ggtGCGGCACGAGCGTTTACTTACCGGACTGCGCGCGCTGCTGTGAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGTATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTG                                                                                                                         <  2:743496/140‑1                          GGGGCGGCACGACCAGTTACTTACCGCACCCCGCTCGCTGCTGTTAAGCCGCAAGAATCCGTCTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTG                                                                                                                         <  1:483010/143‑1                           GGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGG                                                                                                                        <  1:671989/143‑1                                 CACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCCCTCGAAAACCTTGGTTTGGGAGGAGGCTCTGCATTGCCTGTGGGggggcc                                                                                                                  >  2:763153/1‑137                                  ACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTGGGCTTGGGAGAAGGCCCGGCATGACCTGTTGGTGTCCCG                                                                                                                 >  1:353846/1‑143                                    GACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCCCTGCATTACCCGTTGGTGTCCCGGT                                                                                                               >  2:379745/1‑143                                         GTTACTTACCGCATCTCGCGCGCTGCTGTTAAGCCGCAAGAAGCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTCCGT                                                                                                          <  1:704527/143‑1                                              TTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCACAAGGCTCTCGAAAACCCTGGTTCGGGAGCAGGCTCTGCATTACCTGTTGGAGTCCCGGTTCGGAGGCCT                                                                                                     >  2:236228/1‑143                                                       TTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACT                                                                                            >  2:18912/1‑143                                                         CGCGCGCTGCTGTTCAGCCGCAAGAATCCGTTTGTTGATATCATTTCGGTTGGCACTGTGCAAACGGCTCTCGAAAACCTGGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCC                                                                                          <  1:281096/143‑1                                                           CGCGCTGCTGCTAAGCCGCAAGACCCCCCGCCCCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAATCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCCGC                                                                                        <  1:173651/143‑1                                                                TGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACA                                                                                   >  1:340413/1‑143                                                                TGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACA                                                                                   >  1:930358/1‑143                                                                   TGTTAAGCCGCAAGACTCCGTTTGGCGAGATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGC                                                                                <  2:239133/143‑1                                                                          CCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGGTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGA                                                                         >  1:280603/1‑143                                                                            GCAAGAATCCGTTTGGCGATATCAGATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAA                                                                       <  2:170025/143‑1                                                                                 AATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTAAAATGCga                                                                  >  1:5368/1‑141                                                                                             tATATAAAGTCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTCGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAATGCAATGGTGCCGCTTT                                                      <  2:734855/142‑1                                                                                                   ctggCGGATGGGCCTGTGCAGACGGCTCTCGAGTACCTTGGTTTGGCAGCAGGCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTAAAATGCAATTGTGCCGCTTTTTCTGC                                                <  2:343076/139‑1                                                                                                       CGGGTGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGGCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAATGCAATGGTGCCGCTTTTTCTGCTGAA                                            <  2:180096/143‑1                                                                                                       CGGATGGCACGGTGCAAACGGCTCCCGAATACCTTGGTTGGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAATGCAATGGTGCCGCTTTTTCTGCTGAA                                            <  2:565818/143‑1                                                                                                        GGAGGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAATGCAATGGTGCCGCTTTTTCTGCTGAAG                                           <  1:716078/143‑1                                                                                                         GATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAATGCAATGGTGCCGCTTTTTCTGCTGAAGA                                          <  1:380586/143‑1                                                                                                             GCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAATGCAATGGTGCCGCTTTTTCTGCTGAAGAATAC                                      <  2:262363/143‑1                                                                                                              CACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAATGCAATGGTGCCGCTTTTTCTGCTGAAGAATACC                                     >  1:689170/1‑143                                                                                                                   TGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAACTGCCATGGGGCCGCTTTTTCTGCTGAAGAATACCCGGAA                                >  2:854962/1‑143                                                                                                                    GCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAATGCAATGGTGCCGCTTTTTCTGCTGAAGAATACCCGGAAC                               <  2:340413/143‑1                                                                                                                    GCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGGTGCGAGGCCTTCAGCCACCCCGCCAACAGGCTGGCTGAAATGCAATGGTGCCGATTTTTCTGCCGAAGAATAACCGGAAa                               >  2:721371/1‑142                                                                                                                      AAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAATGCAATGGTGCCGCTTTTTCTGCTGAAGAATACCCGGAACTG                             >  1:476827/1‑143                                                                                                                             TCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAATGCAATGGTGCCGCTTTTTCTGCTGAAGGATACCCGGACCTGGCAAAGG                      >  1:74874/1‑143                                                                                                                                 GAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTCGGTGGACTTCAGCCACTCGGCCAACAGGCTGGCGGAAATGCAAGGGTGCCGCTTTTTCTGCTGAAGAATCCTCGGCACTGGCAAAGGCTTA                  >  1:917690/1‑143                                                                                                                                 GAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTGCGCCAACAGGCTGGCTGAAATGCAATGGTGCCGCTTTTTCTGCTGAAGAATAGCCTGAACTGTGAACGGCTTA                  >  1:317268/1‑143                                                                                                                                      CCTTGGTTTGGGAGAAGGCTCTGCAGTACCTGTTGGTGTCCCGGTTCCGTTGCCTTCAGCCACTCCGCCAGCGGGCTGGCTGAAATGCAATGGTGCCGCTTTTTCTGCTGAAGAATACCCGGAACTGGCAAAGGCTTATCCGA             <  2:286790/143‑1                                                                                                                                       CTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGCCTCTGATTGGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGACATGCAGTGGTGCCGCTTTCTCTGCTGAAGAATACCCGGCACTGGCACGTTCTTATCCGAC            >  2:206075/1‑143                                                                                                                                            TTTGGGAGAAGGCTCTGCATTACCTGCTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAATGCAATGGTGCCGCTTTTTCTGCTGAAGAATACCCGGAACTGGCAAAGGCTTATCCGACAAATA       <  2:892285/143‑1                                                                                                                                            TTTGGGAGAAGGCTCTGCATTACCAGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAATGCAATGGTGCCGCTTTTCCTGCTGAAGAATACCCGGAACTGCCAAAGTCTTATCCGACAAATA       >  2:269184/1‑143                                                                                                                                              TGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAATGCAATGGTGCCGCTTTTTCTGCTGAAGAATACCCGGAACTGGCAAAGGCTTATCCGACAAATAAA     <  2:840614/143‑1                                                                                                                                               GGGAGGGGGCCCTGCGGTACCTGTTGGGGTCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAATGCAATGGTGCCGCTTTTTCTGCTGAAGAATACCCGGAACTGGCAAAGGCTTATCCGACAAATAAAT    <  2:33733/143‑1                                                                                                                                                 GAGAAGGCTCTGCATTACCTGTTGGTATCCCGGTTCCGTTGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAATGCAATGGTGCCGCTTTTTCTGCTGAAGAATACCCGGAACTGGCAAAGGCTTATCCGACAAAGAAATTG  >  1:41062/1‑143                                                                                                                                                                                                                                                                                                 AGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1207655‑1207805 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttggtttgggagaaggCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAATGCAATGGTGCCGCTTTTTCTGCTGAAGAATACCCGGAACTGGCAAAGGCTTATCCGACAAATAAATTG  <  NC_000913/1209602‑1209467

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.