| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1207805 | 4 (0.080) | 35 (0.750) | 31/252 | 0.5 | 85.8% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 8 (0.170) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
CAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAA > NC_000913/1209467‑1209743 | cAATTTCTTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCAACGGAACCGGGATACCAACAGGTAATGCAGAGccttctc > 1:41062‑M2/1‑136 (MQ=255) atttatttGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACCCCAACAGGTACCGCAGGGccccctccc < 2:33733‑M2/143‑10 (MQ=255) tttatttGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctccca < 2:840614‑M2/143‑11 (MQ=255) tatttGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAGCAGGTAATGCAGAGccttctcccaaa < 2:892285‑M2/143‑13 (MQ=255) tatttGTCGGATAAGACTTTGGCAGTTCCGGGTATTCTTCAGCAGGAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACTGGTAATGCAGAGccttctcccaaa > 2:269184‑M2/1‑131 (MQ=255) gTCGGATAAGAACGTGCCAGTGCCGGGTATTCTTCAGCAGAGAAAGCGGCACCACTGCATGTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACCAATCAGAGGCACCAACAGGTAATGCAGAGccttctcccaaaccaag > 2:206075‑M2/1‑126 (MQ=255) tCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCCGCTGGCGGAGTGGCTGAAGGCAACGGAACCGGGACACCAACAGGTACTGCAGAGccttctcccaaaccaagg < 2:286790‑M2/143‑19 (MQ=255) gATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCAGAGTGGCTGAAGGCCACGGAACCGGGACACCAACCGGTAATGCAGAGCCTTCTCCCAAACCAACGtta > 2:381241/1‑142 (MQ=255) tAAGCCTTTGCCAGTGCCGAGGATTCTTCAGCAGAAAAAGCGGCACCCTTGCATTTCCGCCAGCCTGTTGGCCGAGTGGCTGAAGTCCACCGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttc > 1:917690‑M2/1‑120 (MQ=255) tAAGCCGTTCACAGTTCAGGCTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGCAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttc > 1:317268‑M2/1‑120 (MQ=255) ccTTTGCCAGGTCCGGGTATCCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgaga > 1:74874‑M2/1‑116 (MQ=255) cAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgttt > 1:476827‑M2/1‑109 (MQ=255) tttcCGGTTATTCTTCGGCAGAAAAATCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGGGTGGCTGAAGGCCTCGCACCCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgc > 2:721371‑M2/2‑107 (MQ=255) gTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgc < 2:340413‑M2/143‑37 (MQ=255) ttCCGGGTATTCTTCAGCAGAAAAAGCGGCCCCATGGCAGTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgca > 2:854962‑M2/1‑106 (MQ=255) ttCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAAt > 1:864835/1‑143 (MQ=255) ggTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtg > 1:689170‑M2/1‑101 (MQ=255) gTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgc < 2:262363‑M2/143‑44 (MQ=255) tggtctgcAGCAGAGAAAGCGGGCCGATGGCATGTCAGCCAGTCTGTGGTCCGAGTGGCTGAAGGCCACTTAACCGGTACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGc < 2:289375/140‑1 (MQ=255) tcttcAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatc < 1:380586‑M2/143‑48 (MQ=255) cttcAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccctcc < 1:716078‑M2/143‑49 (MQ=255) ttcAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGCCACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccacccg < 2:180096‑M2/143‑50 (MQ=255) ttcAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctccccaaccaaggtattcgggagccgtttgcaccgtgccatccg < 2:565818‑M2/143‑50 (MQ=255) agaagAAAAAGCGGCACCATTGCATTTCAGCCCGCATGTTGGCGAGGTGGCTGAAGGCCACGGAACCGGGAAACAAACAGGTAAGGCAGAGCGCTATGCCAAACCAACGTGTGTGAAAATGAAGAAATAACAAGCAAATGGca > 2:315341/4‑143 (MQ=255) gcagAAAAAGCGGCACAATTGCATTTTAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGcctgctgccaaaccaaggtactcgagagccgtctgcacaggcccatccgccag < 2:343076‑M2/143‑54 (MQ=255) aaaGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccgaaccaaggttttcgagagccgtttgcacagtgccatccgactttatata < 2:734855‑M2/143‑60 (MQ=255) tcgcaTTTTAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggatt > 1:5368‑M2/3‑72 (MQ=255) tttCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatctgatatcgccaaacggattcttgc < 2:170025‑M2/143‑77 (MQ=255) ttCAGCCAGGCTGTGGGCGGAGTGGCTGAAGGCCATGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGAt < 2:175075/143‑1 (MQ=255) tCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGACCCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcgg > 1:280603‑M2/1‑65 (MQ=255) gccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatctcgccaaacggagtcttgcggcttaaca < 2:239133‑M2/143‑86 (MQ=255) tGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagca > 1:930358‑M2/1‑55 (MQ=255) tGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagca > 1:340413‑M2/1‑55 (MQ=255) gCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaagattttcgagagccgtttgcacagtgccatccgatttgatatcggggcggggggtcttgcggcttagcagcagcgcg < 1:173651‑M2/143‑94 (MQ=255) ggAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaacccaggttttcgagagccgtttgcacagtgccaaccgaaatgatatcaacaaacggattcttgcggctgaacagcagcgcgcg < 1:281096‑M2/143‑96 (MQ=255) aGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaa > 2:18912‑M2/1‑46 (MQ=255) aGGCCTCCGAACCGGGACTCCAACAGGTAATGCAGAGcctgctcccgaaccagggttttcgagagccttgtgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaa > 2:236228‑M2/1‑37 (MQ=255) aCGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggcttcttgcggcttaacagcagcgcgcgagatgcggtaagtaac < 1:704527‑M2/143‑112 (MQ=255) aCCGGGACACCAACGGGTAATGCAGGGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtc > 2:379745‑M2/1‑27 (MQ=255) cGGGACACCAACGTGTAATGCAGAGGCTGCTCCGAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTTCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGAc < 2:592019/143‑1 (MQ=255) cGGGACACCAACAGGTCATGCCGGGccttctcccaagcccaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgt > 1:353846‑M2/1‑25 (MQ=255) ggcccccccacaggcAATGCAGAGcctcctcccaaaccaaggttttcgagggccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtg > 2:763153‑M2/7‑24 (MQ=255) ccAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccc < 1:671989‑M2/143‑126 (MQ=255) cAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccagacggattcttgcggcttaacagcagcgagcggggtgcggtaagtaactggtcgtgccgcccc < 1:483010‑M2/143‑127 (MQ=255) cAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatacgatttgatatcgccaaacggattcttgcggcttcacagcagcgcgcgcagtccggtaagtaaacgctcgtgccgcacc < 2:743496‑M2/143‑127 (MQ=255) aGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATGCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGAt < 2:864835/143‑1 (MQ=255) tAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATACCTGCTTATACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAAGACAGATCTa > 2:331575/1‑143 (MQ=255) agccttctcccaggccaaggttttcgagagccgtgtgcacagtgccatccgagttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctccaggctggca > 2:666123‑M2/1‑2 (MQ=255) | CAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAA > NC_000913/1209467‑1209743 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |