New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2667128 =	32 (0.600)	3 (0.060)	3/266	6.6	10.9%	coding (719/1140 nt)	hcaT	putative 3‑phenylpropionic transporter
	?	NC_000913	= 3026941	19 (0.380)					coding (1176/1320 nt)	guaD	guanine deaminase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GAGCACCGGTTGGTCTGCGTGGTTGGCGCTGGTTCGCCAGAACTGGCGCTTTCTGGCCTGCGTTTGTTTATTGCAGGGGGCACATGCGGCCTATTACGGTTTTAGCGCCATTTACTGGCAGGCAGCTGGCTACTCGGCCTCGGCGGTGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2667277‑2667128 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcggtgggTTCCATCACCACGAAATCAGCCTCTTTGCCAGGTAAAAAGTTGCCAATCAAATCGTCAAGGCCCAGAGATTTCGCTCCGCCGAGCGTGGCCAGGTAAAACGCTTCATATGCCGAGAGGCGATAGCCTTGTAATTGCAA  <  NC_000913/3026941‑3026804                                                                                                                                                                                                                                                                                                  GAGCACCGGTTGCTCTGCGTGGTTGGCGCTGGTTCGCCAGAACTGGCGCTTTCTGGCCTGCGTTTGTTTATTGCAGGGTGCACATGCGGCCTATTACGGTTTTAGCGCCATTTACTGGCAGGCAGCTGGCTACTCGGCCTCGG                                                                                                                                                   <  1:326749/143‑1  AGCACCGGTTGGTCTGCGTGGTTGGCGCTGGTTCGCCAGAACTGGCGCTTTCTGGCCTGCGTGTGTGTATTGCAGGGGGCACATGCGGCCTATTACGGTTTTAGCGCCATTTACTGGCAGGCAGGTGGCCACTCGGCCGCGGC                                                                                                                                                  >  1:263750/1‑143    CACCGGTTGGTCTGCGTGGTTGGCGCTGGTTCGCCAGAACTGGCGCTTTCTGGCCTGCGTTTGTTTATTGCAGGGGGCACATGCGGCCTATTACGGTTTTAGCGCCATTTACTGGCAGGGAGCTGGCTACTCGGCCTCGGCGG                                                                                                                                                >  1:90392/1‑143     ACCGGTTGGTCTGCGTGGTTGGCGCTGGTTCGCCAGAACTGGCGCTTTCTGGCCTGCGTTTGTTTATTGCAGGGGGCACATGCGGCCTATTACGGTTTTAGCGCCATTTGCTGGCAGGCAGCTGGCTCCTCGGCCTCGGCGGT                                                                                                                                               >  2:598634/1‑143      CCGGTTGGTCTGCGTGGTTGGCGCTGGGTCGGCAGAACTGGCGTTTTCTGGCCTCCGTTTCCTTAGTGGCGTGTGCCCTTGCGGCCTATTACGGTTTTAGCGCCATTTACTGGCAGGCAGCTGGCTACTCGGCCTCGGCGGTG                                                                                                                                              <  2:518649/143‑1       CGGTTTGTCTGCGTGGTTGGCGCTGGTTCGCCAGAACTGGCGCTTTCTGGCTTGCGTTTGTTTATTGCAGGGGCCACATGCGGCCTATTACGGTTTTAGCGCCATTTACTGGCAGGCATCTGGCTTCTCGGCCTCGGCGGTGG                                                                                                                                             <  2:347683/143‑1        GGTTGGTCTGCGTGGTTGGCGCTGGTTCGCCAGCGCTGGCGCTTTCTGGCCTGCGTTTGCTCATTGCAGGCGGCCCATGCGGCCTACCACGGTGGTGGCGCCATTTACTGGCAGGCAGCTGGCTACTCGGCCTCGGCGGTGGG                                                                                                                                            <  2:674956/143‑1          TTGGTCTGCGTGGTTGGCGCTGGTTCGCCAGAACTGGCGCTTTCTGGCCTGCGTTTGTTTATTGCAGGGGGCACATGCGGCCTATTACGGTTTTAGCGCCATTTACTGGCAGGCAGCGGGCTCCTCGGCCTCTGCGGCGGGTT                                                                                                                                          >  2:762822/1‑143                                                                                                      TTAGCGCCATTTACTGGCAGGCAGCTGGCTACTCGGCCTCGGCGGTGGGTTCCATCACCACGAAATCAGCCTCTTTGCCAGGTAAAAA                                                                                                     >  1:393982/1‑88                                                                                                      TTAGCGCCATTTACTGGCAGGCAGCTGGCTACTCGGCCTCGGCGGTGGGTTCCATCACCACGAAATCAGCCTCTTTGCCAGGTAAAAA                                                                                                     <  2:393982/88‑1                                                                                                                                        cgtcgctGCGGTGGTTTCCATCAGCCCGCACGCAGCCTCTTTGCCAGGTAACAAGTTGCCAATCACATCGTCAAGGCCCAGAGATTTCGCTCCGCCGAGCGTGGCCAGGTAAAACGCTTCATATGCCGAGAGGCGATAGCCTT            <  2:40824/136‑1                                                                                                                                                  ttgtGTTCCATCTCTATGAAATCAGCCTCTTGGCCAGGTAAAAAGTTGCCAATCGAATCGTCAAGGCCTAGAGATTTCGTTCCGCCGAGCGTGGCCAGGTAAAACGCTTCATATGTCGAGAGGCGATAGCCTTGTAATTGCAA  <  2:526120/139‑1                                                                                                                                                                                                                                                                                                  GAGCACCGGTTGGTCTGCGTGGTTGGCGCTGGTTCGCCAGAACTGGCGCTTTCTGGCCTGCGTTTGTTTATTGCAGGGGGCACATGCGGCCTATTACGGTTTTAGCGCCATTTACTGGCAGGCAGCTGGCTACTCGGCCTCGGCGGTGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2667277‑2667128 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcggtgggTTCCATCACCACGAAATCAGCCTCTTTGCCAGGTAAAAAGTTGCCAATCAAATCGTCAAGGCCCAGAGATTTCGCTCCGCCGAGCGTGGCCAGGTAAAACGCTTCATATGCCGAGAGGCGATAGCCTTGTAATTGCAA  <  NC_000913/3026941‑3026804

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.