New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1417458 =	49 (0.930)	3 (0.060)	3/264	6.6	6.2%	intergenic (‑72/+30)	recE/racC	Rac prophage; exonuclease VIII, 5' to 3' specific dsDNA exonuclease/Rac prophage; uncharacterized protein
	?	NC_000913	1417483 =	45 (0.920)					intergenic (‑97/+5)	recE/racC	Rac prophage; exonuclease VIII, 5' to 3' specific dsDNA exonuclease/Rac prophage; uncharacterized protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CACAGGACGACGTCAGGTTCACCGGATGATTTTTTCGCTTTCCGTAACAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCGATATGCACCAGGCACATTTTTTTGACACCTTCA  >  NC_000913/1417316‑1417599                                                                                                                                               |                                                                                                                                              cacaGGACGACGTCAGGTTCACCGGATGATTTTTTCGCTTTCCGTAACAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGCTTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCa                                                                                                                                               >  2:350305/1‑143 (MQ=255)     ggACGACGTCAGGTTCGCCGGATGATTTTTTCGCTTTCCGTAACAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGc                                                                                                                                           <  2:791355/143‑1 (MQ=255)         gacgTCAGGTTCGCGTGATGAGTTTTGCGCTTTCCGGAACAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTgc                                                                                                                                       <  2:71236/143‑1 (MQ=255)            gTCAGGTTCACCGGATGATTTTTTCGCTTTCCGTAACAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGcc                                                                                                                                    >  1:671747/1‑143 (MQ=255)              cAGGTTCACCGGATGATTTTTTCGCTTTCCGTAACAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTTAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCag                                                                                                                                  >  1:666140/1‑142 (MQ=255)                         gatgctTTTTTCGCTTTACGTAACAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATGAAGAGGCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGTATGGCGCAGGCTAt                                                                                                                       <  1:285051/143‑1 (MQ=255)                             atTTTTTCGCTTTCCGTAACAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTAtttct                                                                                                                   <  1:860614/143‑1 (MQ=255)                               tttttCGCTTTCCGTAACAGGAAGAGTGGTTTTGGGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTAtttcttt                                                                                                                 <  1:740558/143‑1 (MQ=255)                                   tCGCTTTCCGTAACAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGa                                                                                                             <  1:416933/143‑1 (MQ=255)                                      cTTTCCGTAACAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGAttt                                                                                                          >  1:616067/1‑143 (MQ=255)                                       tttCCGTAACAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTTCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTc                                                                                                         >  1:798844/1‑143 (MQ=255)                                       tttCCGTAACAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTc                                                                                                         >  1:770957/1‑143 (MQ=255)                                              aaCAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGTCATACGCAGGCTATTTCTTTCAGATTTCACCtttt                                                                                                  <  1:469209/143‑1 (MQ=255)                                              aaCAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAACGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCtttt                                                                                                  <  2:766599/143‑1 (MQ=255)                                                       agTGGTTTTGTGCTGATTGTCTTTTAACCTCAACTCATATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCAtt                                                                                         <  2:255263/143‑1 (MQ=255)                                                       agTGGTTTTGTGCTCATTGTTTTTTAACCTCACCTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCAtt                                                                                         <  1:6457/143‑1 (MQ=255)                                                       agTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCAtt                                                                                         <  2:404830/143‑1 (MQ=255)                                                       agTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCAtt                                                                                         >  2:810205/1‑143 (MQ=255)                                                        gTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTg                                                                                        <  1:301316/143‑1 (MQ=255)                                                                   cTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCTATTCGAGtt                                                                             >  1:261269/1‑143 (MQ=255)                                                                    tCATTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTAAGATGACACCTTTTAATTTCATTGCCATTAGAGTTg                                                                            >  2:923534/1‑143 (MQ=255)                                                                      aTTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGCTCTTGCCGGATACACCCTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGcc                                                                          <  1:524036/143‑1 (MQ=255)                                                                       ttGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTCTCAGATTTCACCTTTTACTTTCATTGCAATTAGAGtgccca                                                                         >  2:804161/1‑138 (MQ=255)                                                                           tttttAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGaaa                                                                     <  2:493272/143‑1 (MQ=255)                                                                               gaaCCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCg                                                                 <  2:475925/142‑1 (MQ=255)                                                                                       tcttaGATTAACATTGTTTTTGTTCAGGGAATGATTTTGCCGGATACACACTGTTCATAGCCTGCGCCATACTCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCtttttt                                                         <  2:90003/139‑1 (MQ=255)                                                                                         tCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGcc                                                                          >  1:775415/1‑124 (MQ=255)                                                                                         tCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGcc                                                                          <  2:775415/124‑1 (MQ=255)                                                                                         tCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCtttttttt                                                       <  1:9215/143‑1 (MQ=255)                                                                                             aTTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGc                                                   <  1:284863/143‑1 (MQ=255)                                                                                                  agttCGTTTTTTCTAGTGAATGATCTTGTCGGATACACACTTTTGATAGTTTGCGCCATACGCTTGCTATTTCTTTCACACTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCa                                              <  2:13951/141‑1 (MQ=255)                                                                                                   aTTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCTATTAGAGTTGCCAGCAATTCGGCTTTTTTTTCTGCGGGccg                                             >  1:263538/1‑141 (MQ=255)                                                                                                    ttCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGa                                            <  2:395837/143‑1 (MQ=255)                                                                                                            cttCAGTGAATGATCTTGCCGGATACACGCTGTTTATGTCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCATCGTTTAATTTCATTGCAATTAGAGTTTCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCTTTcc                                    <  2:556408/142‑1 (MQ=255)                                                                                                             ttCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCg                                   <  2:361659/143‑1 (MQ=255)                                                                                                                aGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCATCTTCTTTCCgtaa                                >  2:485615/1‑140 (MQ=255)                                                                                                                 gTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCCTACGCAGACTATTTCGTTCAGATTTCACCTTTTAATTTCATTGTCCTTTGAGTCGGCGGACCGTCGCCTTTTTTTTCTGCGGTTAGCTTCCTTCCGatat                               >  2:878149/1‑143 (MQ=255)                                                                                                                 gTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCGatat                               <  2:810452/143‑1 (MQ=255)                                                                                                                  tGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCGATATg                              <  1:826459/143‑1 (MQ=255)                                                                                                                    aaTGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGGTTCTTTCCGTTATGCa                            >  1:216031/1‑143 (MQ=255)                                                                                                                           ttGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTATTCTATGTTGGCTGATTCTTTCCGATATGCACCAGGca                     >  1:900053/1‑143 (MQ=255)                                                                                                                                   ttctaccTGTTCATAGCCTTCGCCATTCTGTTGCTATTTCTTTCAGATTTCTCCTTTTAATTTCATTGCAATTAGTGTTTCCAGAAATTCGGCTTTTTTTTCTGCGTGCAGATTCTTTCCGATATGCACCAGGCACAtttttt             <  2:539497/137‑1 (MQ=255)                                                                                                                                   tACACACTGTTCATAGCCTGCGCCATACGCAGGTGTTTGCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCGATATGCACCAGGCACAtttttt             <  2:671747/143‑1 (MQ=255)                                                                                                                                    acacacTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTTCGGATAGATTCTTTCCCATATGCACCACTCACAttttttt            >  2:390223/1‑143 (MQ=255)                                                                                                                                     cacacTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGC‑TTTTTTTCTGCGGGCAGGTTCTTTCCGATATGCACCAGGCCCATTTTTTTGa          >  1:247056/1‑143 (MQ=255)                                                                                                                                      acccTGTTCACAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATGAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCGATATGCACCAGGCACATTTTTTTGa          <  1:858465/140‑1 (MQ=255)                                                                                                                                      acacTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTACTTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGGTTCTTTCCGCTATGCACCAGGCACATTTTTTTgc          >  2:390158/1‑142 (MQ=255)                                                                                                                                              cATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCCATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCTGGCAGATTCTTTCCGATATGCACCAGGCACATTTTTTTGACACCTtca  <  1:449085/143‑1 (MQ=255)                                                                                                                                              cATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGACAGAAATTCGGCTTTTTTTTTTGCGGCTAGGTCCTTTTCGATAGGCCCCAGCCACCTTGCTTTTTCACTTtca  >  2:303996/1‑143 (MQ=255)                                                                                                                                               |                                                                                                                                              CACAGGACGACGTCAGGTTCACCGGATGATTTTTTCGCTTTCCGTAACAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCGATATGCACCAGGCACATTTTTTTGACACCTTCA  >  NC_000913/1417316‑1417599

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.