New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1417458 =49 (0.930)3 (0.060) 3/264 6.6 6.2% intergenic (‑72/+30) recE/racC Rac prophage; exonuclease VIII, 5' to 3' specific dsDNA exonuclease/Rac prophage; uncharacterized protein
?NC_000913 1417483 = 45 (0.920)intergenic (‑97/+5) recE/racC Rac prophage; exonuclease VIII, 5' to 3' specific dsDNA exonuclease/Rac prophage; uncharacterized protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ATTTTTTCGCTTTCCGTAACAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCGATATGCACCAGGCACATTTTTTTGACACCTTCATCAAGTGTTTTTACGTTGCCTGATG  >  NC_000913/1417344‑1417624
                                                                                                                                           |                                                                                                                                             
atTTTTTCGCTTTCCGTAACAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTAtttct                                                                                                                                            <  1:860614/143‑1 (MQ=255)
  tttttCGCTTTCCGTAACAGGAAGAGTGGTTTTGGGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTAtttcttt                                                                                                                                          <  1:740558/143‑1 (MQ=255)
      tCGCTTTCCGTAACAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGa                                                                                                                                      <  1:416933/143‑1 (MQ=255)
         cTTTCCGTAACAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGAttt                                                                                                                                   >  1:616067/1‑143 (MQ=255)
          tttCCGTAACAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTTCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTc                                                                                                                                  >  1:798844/1‑143 (MQ=255)
          tttCCGTAACAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTc                                                                                                                                  >  1:770957/1‑143 (MQ=255)
                 aaCAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGTCATACGCAGGCTATTTCTTTCAGATTTCACCtttt                                                                                                                           <  1:469209/143‑1 (MQ=255)
                 aaCAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAACGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCtttt                                                                                                                           <  2:766599/143‑1 (MQ=255)
                          agTGGTTTTGTGCTGATTGTCTTTTAACCTCAACTCATATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCAtt                                                                                                                  <  2:255263/143‑1 (MQ=255)
                          agTGGTTTTGTGCTCATTGTTTTTTAACCTCACCTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCAtt                                                                                                                  <  1:6457/143‑1 (MQ=255)
                          agTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCAtt                                                                                                                  >  2:810205/1‑143 (MQ=255)
                          agTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCAtt                                                                                                                  <  2:404830/143‑1 (MQ=255)
                           gTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTg                                                                                                                 <  1:301316/143‑1 (MQ=255)
                                      cTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCTATTCGAGtt                                                                                                      >  1:261269/1‑143 (MQ=255)
                                       tCATTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTAAGATGACACCTTTTAATTTCATTGCCATTAGAGTTg                                                                                                     >  2:923534/1‑143 (MQ=255)
                                         aTTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGCTCTTGCCGGATACACCCTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGcc                                                                                                   <  1:524036/143‑1 (MQ=255)
                                          ttGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTCTCAGATTTCACCTTTTACTTTCATTGCAATTAGAGtgccca                                                                                                  >  2:804161/1‑138 (MQ=255)
                                              tttttAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGaaa                                                                                              <  2:493272/143‑1 (MQ=255)
                                                  gaaCCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCg                                                                                          <  2:475925/142‑1 (MQ=255)
                                                          tcttaGATTAACATTGTTTTTGTTCAGGGAATGATTTTGCCGGATACACACTGTTCATAGCCTGCGCCATACTCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCtttttt                                                                                  <  2:90003/139‑1 (MQ=255)
                                                            tCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGcc                                                                                                   <  2:775415/124‑1 (MQ=255)
                                                            tCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGcc                                                                                                   >  1:775415/1‑124 (MQ=255)
                                                            tCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCtttttttt                                                                                <  1:9215/143‑1 (MQ=255)
                                                                aTTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGc                                                                            <  1:284863/143‑1 (MQ=255)
                                                                     agttCGTTTTTTCTAGTGAATGATCTTGTCGGATACACACTTTTGATAGTTTGCGCCATACGCTTGCTATTTCTTTCACACTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCa                                                                       <  2:13951/141‑1 (MQ=255)
                                                                      aTTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCTATTAGAGTTGCCAGCAATTCGGCTTTTTTTTCTGCGGGccg                                                                      >  1:263538/1‑141 (MQ=255)
                                                                       ttCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGa                                                                     <  2:395837/143‑1 (MQ=255)
                                                                               cttCAGTGAATGATCTTGCCGGATACACGCTGTTTATGTCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCATCGTTTAATTTCATTGCAATTAGAGTTTCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCTTTcc                                                             <  2:556408/142‑1 (MQ=255)
                                                                                ttCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCg                                                            <  2:361659/143‑1 (MQ=255)
                                                                                   aGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCATCTTCTTTCCgtaa                                                         >  2:485615/1‑140 (MQ=255)
                                                                                    gTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCCTACGCAGACTATTTCGTTCAGATTTCACCTTTTAATTTCATTGTCCTTTGAGTCGGCGGACCGTCGCCTTTTTTTTCTGCGGTTAGCTTCCTTCCGatat                                                        >  2:878149/1‑143 (MQ=255)
                                                                                    gTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCGatat                                                        <  2:810452/143‑1 (MQ=255)
                                                                                     tGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCGATATg                                                       <  1:826459/143‑1 (MQ=255)
                                                                                       aaTGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGGTTCTTTCCGTTATGCa                                                     >  1:216031/1‑143 (MQ=255)
                                                                                              ttGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTATTCTATGTTGGCTGATTCTTTCCGATATGCACCAGGca                                              >  1:900053/1‑143 (MQ=255)
                                                                                                      ttctaccTGTTCATAGCCTTCGCCATTCTGTTGCTATTTCTTTCAGATTTCTCCTTTTAATTTCATTGCAATTAGTGTTTCCAGAAATTCGGCTTTTTTTTCTGCGTGCAGATTCTTTCCGATATGCACCAGGCACAtttttt                                      <  2:539497/137‑1 (MQ=255)
                                                                                                      tACACACTGTTCATAGCCTGCGCCATACGCAGGTGTTTGCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCGATATGCACCAGGCACAtttttt                                      <  2:671747/143‑1 (MQ=255)
                                                                                                       acacacTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTTCGGATAGATTCTTTCCCATATGCACCACTCACAttttttt                                     >  2:390223/1‑143 (MQ=255)
                                                                                                        cacacTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTCTGCGGGCAGGTTCTTTCCGATATGCACCAGGCCCATTTTTTTGa                                   >  1:247056/1‑143 (MQ=255)
                                                                                                         acccTGTTCACAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATGAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCGATATGCACCAGGCACATTTTTTTGa                                   <  1:858465/140‑1 (MQ=255)
                                                                                                         acacTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTACTTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGGTTCTTTCCGCTATGCACCAGGCACATTTTTTTgc                                   >  2:390158/1‑142 (MQ=255)
                                                                                                                 cATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCCATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCTGGCAGATTCTTTCCGATATGCACCAGGCACATTTTTTTGACACCTtca                           <  1:449085/143‑1 (MQ=255)
                                                                                                                 cATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGACAGAAATTCGGCTTTTTTTTTTGCGGCTAGGTCCTTTTCGATAGGCCCCAGCCACCTTGCTTTTTCACTTtca                           >  2:303996/1‑143 (MQ=255)
                                                                                                                               tacgagggCTATTTCTTTCAGCTTTGACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAACTCGGCTTTTTCTCCGGCGGGCAGATTCTTTCCGATATGCACCAGGCACATTTTTTTGACACCTTCATCAAGTGTTTTTAc             <  1:385718/137‑1 (MQ=255)
                                                                                                                               tACGCAGACTATTTCTTTCAAAATGCACCTGCTAATTTCGTTGCAATAAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCGATAGGCACCAGGCACATTTTTTTGACACCTTCATCAAGTGTTTTTAc             <  1:323891/143‑1 (MQ=255)
                                                                                                                                aCGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCGATATGCACCAGGCACATTTTTTTGTCACCTTAATCTAGTGtttttgct            >  2:655744/1‑140 (MQ=255)
                                                                                                                                 cGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCGATATGCACCAGGCACATTTTTTTGACACCTTCATCAAGTGTTTTTACGt           >  1:927501/1‑143 (MQ=255)
                                                                                                                                  gCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCGCTATGCTCCTGGCACATTTTTTTGTCCCCTTCTTCCATTTTTTTTACttt          >  1:61651/1‑143 (MQ=255)
                                                                                                                                      gCTATTTCTTTCCGCTTTCACCTTTTGATTTCATTGCAACTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCTGTCCGATATGCACCAGGCACATTTTTTTGACACCTTCATCAAGTGTTTTTACGTTGCCt      <  2:272244/143‑1 (MQ=255)
                                                                                                                                        tATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCGATATGCACTCGGCCCATTTTTTTGTCCCCTTCAGCTCGCGTTTTTTCGTTTCCTgc    >  1:130330/1‑142 (MQ=255)
                                                                                                                                        tATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCGATATGCACCAGGCACATTTTTTTGACACCTTCATCAAGTGTTTTTACGTTGCCTGa    >  1:842170/1‑143 (MQ=255)
                                                                                                                                         aTTTCTTTCAGATTTCACCTTTTAATTTCATTGCACTTAGAGTTGCCAGAAATTCGCGGTGTTTTGCTGCGGGCAGATTCTTTCCGATATGCACCAGGCACATTTTTTTGACACCTTCATCAAGTGTTTTTACGTTGCCTGAt   <  1:218865/143‑1 (MQ=255)
                                                                                                                                          tttctttcAGATTTCATCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCGATATGCACCAGGCACATTTTTTTGACACCTTCATCAAGTGTTTTTACGTTGCCTGATg  <  2:107585/143‑1 (MQ=255)
                                                                                                                                          tttctttcAGATTTCACCTTTTGATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCGATATGCACCAGGCACATTTTTTTGACACCTTCATCAAGTGTTTTTACGTTGCCTGATg  <  2:210273/143‑1 (MQ=255)
                                                                                                                                          tttctttcAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCGATATGCACCAGGCCCATTTTTTTCACACCTTCATCAAGTGTTTTTTCGTTTCctgctg  >  1:579726/1‑143 (MQ=255)
                                                                                                                                           |                                                                                                                                             
ATTTTTTCGCTTTCCGTAACAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCGATATGCACCAGGCACATTTTTTTGACACCTTCATCAAGTGTTTTTACGTTGCCTGATG  >  NC_000913/1417344‑1417624

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.