Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 1,293,032 IS1 (–) +8 bp intergenic (‑110/‑488) hns ← / → tdk global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 257908 =NA (NA)44 (0.850) 37/282 0.4 100% noncoding (768/768 nt) IS1 repeat region
?NC_000913 = 1293039 0 (0.000)intergenic (‑117/‑488) hns/tdk global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase
* ? NC_000913 1293032 =0 (0.000)68 (1.310) 55/282 0.0 100% intergenic (‑110/‑495) hns/tdk global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase
?NC_000913 = 1979270 NA (NA)noncoding (1/768 nt) IS1 repeat region

Only 100 of 113 total aligned reads displayed.

CAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCT  >  NC_000913/1292899‑1293181
                                                                                                                                            |                                                                                                                                              
tccggcggcgcttttgccggtacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTgccgcc                                                                                                                                              >  1:14468‑M1/134‑143 (MQ=255)
  cggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCaa                                                                                                                                            >  1:32805‑M1/132‑143 (MQ=255)
  cggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaagcagtaagttggcagcatcaccTGGTGCCGCcac                                                                                                                                            <  1:611172‑M1/12‑2 (MQ=255)
    agtttaaGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTCAGATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaat                                                                                                                                          >  1:134995‑M2/3‑137 (MQ=255)
        tAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgact                                                                                                                                      >  1:936207‑M2/1‑133 (MQ=255)
         gcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatccccTTGTGACCCCAATAAatat                                                                                                                                     <  2:326475‑M1/19‑1 (MQ=255)
         aaGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTGCTTTATTTTGTGCCGggtaatgactc                                                                                                                                     >  2:401659‑M2/1‑132 (MQ=255)
           ttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCt                                                                                                                                   <  1:570148‑M1/21‑1 (MQ=255)
           ttttgccgttacgcaccacccagtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcctacactaaatcagtaagtttgcagcaacaccTTGTGCCACCAATAAATctct                                                                                                                                   <  2:840707‑M1/21‑1 (MQ=255)
            tGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaa                                                                                                                                  <  1:59689‑M2/143‑15 (MQ=255)
               ttCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaactt                                                                                                                               <  2:174213‑M2/143‑18 (MQ=255)
               gccgttacgcagcaccccggcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTc                                                                                                                               >  1:486978‑M1/119‑143 (MQ=255)
                 cgttacgcaccaccccgtcagtagctgaacagtagggacagctgatagaaacagaagcgactggagcacctcaaaaacaccatcatacactaaaacagtaagctggcagcatcaccGTGTGCCGCCAATAAATATCTGTTCAt                                                                                                                             <  2:408745‑M1/27‑1 (MQ=255)
                  gCTCATTGTAGTAATCTCAAACTTATATTAGGGTGGTTTGTTGAGGTAATAATAGAGCCTTACATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttatt                                                                                                                            <  2:18800‑M2/143‑21 (MQ=255)
                   tttattgTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattg                                                                                                                           >  1:668443‑M2/4‑122 (MQ=255)
                   ctacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATaa                                                                                                                           >  2:798953‑M1/115‑143 (MQ=255)
                   cTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTGTTTTGTGCCGggtaatgactccaacttattg                                                                                                                           <  1:67929‑M2/143‑22 (MQ=255)
                    tacccaccaccccgtcagtagctgaacaggagcgacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATaaa                                                                                                                          >  2:798699‑M1/114‑143 (MQ=255)
                       gcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagcgactggagcaccccaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAAtt                                                                                                                       <  1:905647‑M1/33‑1 (MQ=255)
                        caccaccccgtcagtagctgaacaggaggtacagctgatagaaacagaagtcactggagcacctcaaaaacaacatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTa                                                                                                                      >  1:58040‑M1/110‑143 (MQ=255)
                          tagtaATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgt                                                                                                                    <  1:572873‑M2/143‑29 (MQ=255)
                            accccgtcagtagccgaacaggagcgacagctgatagaaacagaagccactcgagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCa                                                                                                                  >  1:59326‑M1/106‑143 (MQ=255)
                             ccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAg                                                                                                                 >  1:615522‑M1/105‑143 (MQ=255)
                              gccgtcagtagctgaacaggagagacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGa                                                                                                                >  2:83318‑M1/104‑143 (MQ=255)
                              cccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcctacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATAACTTTGAATAAAATTAGCCagc                                                                                                                <  2:170644‑M1/40‑2 (MQ=255)
                               aTCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttat                                                                                                               >  2:363678‑M2/1‑110 (MQ=255)
                                 ctcAAACTTATATTGTGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgt                                                                                                             >  2:544053‑M2/1‑108 (MQ=255)
                                  tcAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaaggaagccaacttagtgatagtggtttatgtt                                                                                                            <  2:135544‑M2/143‑37 (MQ=255)
                                    agtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactatatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGAc                                                                                                          >  1:525191‑M1/98‑143 (MQ=255)
                                    aaaCTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttca                                                                                                          >  1:488278‑M2/1‑105 (MQ=255)
                                      tagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTATCCAGAAAAGAcgc                                                                                                        <  1:792855‑M1/48‑1 (MQ=255)
                                        ttATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagata                                                                                                      <  1:128477‑M2/143‑43 (MQ=255)
                                        gctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTCGACAGAAATGACGCgg                                                                                                      <  2:104714‑M1/50‑1 (MQ=255)
                                           gaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCat                                                                                                   <  1:522764‑M1/53‑1 (MQ=255)
                                               ctgagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAg                                                                                               >  1:642844‑M1/87‑143 (MQ=255)
                                               aggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAg                                                                                               <  1:347659‑M1/57‑1 (MQ=255)
                                                   gggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCt                                                                                           <  1:85747‑M1/61‑1 (MQ=255)
                                                     gacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTAt                                                                                         <  1:409816‑M1/63‑1 (MQ=255)
                                                      acagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTAtt                                                                                        <  2:28102‑M1/64‑1 (MQ=255)
                                                          ctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTaca                                                                                    <  2:381468‑M1/68‑1 (MQ=255)
                                                           tgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCAGATAGCCCTGTTTacac                                                                                   <  1:801854‑M1/69‑1 (MQ=255)
                                                           tgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGACGCATATAGCCCTATTCacac                                                                                   <  2:663357‑M1/69‑1 (MQ=255)
                                                            tagGTAATAGTAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcat                                                                                  >  2:415543‑M2/2‑81 (MQ=255)
                                                             atagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCg                                                                                 <  1:101342‑M1/71‑1 (MQ=255)
                                                              ggTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGTTTGGTTTTTAAAAAATTCAAAATTGTTCTTTATTTTGTGCCGggtagtgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgc                                                                                >  1:693053‑M2/1‑79 (MQ=255)
                                                                      gaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCg                                                                        <  2:68924‑M1/80‑1 (MQ=255)
                                                                             ttAAATTGAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacctattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgatttt                                                                 >  2:923595‑M2/1‑64 (MQ=255)
                                                                             ttAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTATTTATTTTCTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgccgctgcagcgatgtt                                                                 <  2:477540‑M2/143‑80 (MQ=255)
                                                                             ctggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACg                                                                 >  1:381468‑M1/57‑143 (MQ=255)
                                                                              tggggcaccgcaaaaactccatcatacactaattcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGt                                                                >  2:714152‑M1/56‑143 (MQ=255)
                                                                               aaaTTCAGTTGTGCAATAGCCAGGAATGAATCGTATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttga                                                               >  1:646625‑M2/1‑62 (MQ=255)
                                                                                gagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATGTACACCGATGATTTCGCAGCACGTGa                                                              >  1:361109‑M1/54‑143 (MQ=255)
                                                                                  ttCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAACATTGTTCTTTATTTTGTGCCGggtaatgactccaacgtattgatagtgttttatgttcagataatgcccgatggctttgtcatgcagctccaccgcttttgggca                                                            <  1:286786‑M2/143‑85 (MQ=255)
                                                                                  ttCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAACTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgaaaa                                                            >  2:639629‑M2/1‑59 (MQ=255)
                                                                                     aGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacga                                                         >  1:17794‑M2/1‑56 (MQ=255)
                                                                                         aaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAAc                                                     <  1:455377‑M1/99‑1 (MQ=255)
                                                                                          aaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACt                                                    >  1:884351‑M1/44‑143 (MQ=255)
                                                                                            accaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTc                                                  >  2:747669‑M1/42‑143 (MQ=255)
                                                                                            aacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTc                                                  >  1:20120‑M1/42‑143 (MQ=255)
                                                                                            aacaccatcatacactaaatcagtaagttggcagcatcaccTTGGGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTc                                                  >  2:39438‑M1/42‑143 (MQ=255)
                                                                                            aacaccaccatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAATGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTc                                                  >  1:199827‑M1/42‑143 (MQ=255)
                                                                                             acaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTcc                                                 >  2:85747‑M1/41‑143 (MQ=255)
                                                                                             aaTAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgact                                                 >  2:213998‑M2/1‑48 (MQ=255)
                                                                                               tAGCCAGTAATGTAAGGAATTCAAAATTGTTCTTTAGTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttc                                               >  2:209697‑M2/1‑46 (MQ=255)
                                                                                               accatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGCGAGGTTACAACTTCCTg                                               <  1:686541‑M1/105‑1 (MQ=255)
                                                                                                 catcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGAt                                             <  1:800664‑M1/107‑1 (MQ=255)
                                                                                                  ccAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgt                                            <  1:708992‑M2/143‑101 (MQ=255)
                                                                                                  ccAGGAATGTAAGGAATTCAAAATTGATCTTTATTTTGTGCCGggtaatgactccaacttaatgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattgtgagaacgacagcgacttccgc                                            <  2:652949‑M2/143‑101 (MQ=255)
                                                                                                   tcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTc                                           >  1:292415‑M1/35‑143 (MQ=255)
                                                                                                    catacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCa                                          <  1:720618‑M1/110‑1 (MQ=255)
                                                                                                    aGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCTGggtaatcccgccaacttattgatagtgtattatgttcagctaatgcccgatgactttgtcatgcagctccaacgattttgcgcccgacagagagttcagtcc                                          <  2:682060‑M2/143‑103 (MQ=255)
                                                                                                       acactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGt                                       >  2:347659‑M1/31‑143 (MQ=255)
                                                                                                        aTGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagc                                      >  2:59689‑M2/1‑37 (MQ=255)
                                                                                                         actaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTca                                     <  1:575859‑M1/115‑1 (MQ=255)
                                                                                                             aatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACAtt                                 <  2:576162‑M1/119‑1 (MQ=255)
                                                                                                                 agtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTAt                             <  1:318718‑M1/123‑1 (MQ=255)
                                                                                                                 aTTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccagg                             <  1:99737‑M2/143‑116 (MQ=255)
                                                                                                                  ttCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttga                                                               <  1:524702‑M2/108‑82 (MQ=255)
                                                                                                                  ttCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttga                                                               >  2:524702‑M2/1‑27 (MQ=255)
                                                                                                                   tCAAAATTGTTCTTTATTTTGTGCCGggtattgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtg                           >  2:163150‑M2/1‑26 (MQ=255)
                                                                                                                   tCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtg                           >  1:576529‑M2/1‑26 (MQ=255)
                                                                                                                       gatTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgc                       >  2:128477‑M2/2‑22 (MQ=255)
                                                                                                                         ggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCACGTCACATTTTATGGGGAGAt                     <  2:906077‑M1/131‑1 (MQ=255)
                                                                                                                          tGTTCTTTAGTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactctgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctc                    >  1:357739‑M2/1‑19 (MQ=255)
                                                                                                                             tCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcaga                 >  1:416161‑M2/1‑16 (MQ=255)
                                                                                                                              catcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCg                <  1:826492‑M1/136‑1 (MQ=255)
                                                                                                                              catcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCg                <  1:142469‑M1/136‑1 (MQ=255)
                                                                                                                               gttaTTTTTTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgacttggtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagatt               >  1:338968‑M2/2‑14 (MQ=255)
                                                                                                                                tgcccTTGTGCTGCCAATAAATATCTTTTCATAAGATTCGCCAGATAAGACGCGGCATATAGCCCTATTTACACTGATGATTGCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTa              >  2:103688‑M1/6‑143 (MQ=255)
                                                                                                                                tcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATggg                          >  2:336105‑M1/6‑131 (MQ=255)
                                                                                                                                tcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATggg                          <  1:336105‑M1/126‑1 (MQ=255)
                                                                                                                                tcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTa              <  1:865389‑M1/138‑1 (MQ=255)
                                                                                                                                  aTTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattgtgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcag            >  1:633598‑M2/1‑11 (MQ=255)
                                                                                                                                    tttGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgccagatgactttgtcatgcagctccaccgattttgagaacgacagcgccttccgtcccagccctgccaggtgctgcgtcagcttcaggc          <  1:292962‑M2/143‑135 (MQ=255)
                                                                                                                                     ttGTGCCGCCAATAAATATCGTTTCATAAAATCAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTg         >  2:499826/1‑143 (MQ=255)
                                                                                                                                      tgtgCCGCCAACTCATCTCTTTTCATAACATTAGCCACACAAGACGCCGCATATAGCCCTATTTCCACCAATGATTTCTCCGCACGTGAGGTTAATACTTCCTGACTCATTTCACATTTTATGGGGAGATTATCGTAGGCTga        <  1:837817/143‑1 (MQ=255)
                                                                                                                                           cGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccg   >  1:515997‑M2/1‑2 (MQ=255)
                                                                                                                                           cGggtaatgactccaacttattgagagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccg   >  1:520452‑M2/1‑2 (MQ=255)
                                                                                                                                            gggtaatgactccaacttattgatagtgttttatgttcagataatgtacgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgc  >  1:401601‑M2/1‑1 (MQ=255)
                                                                                                                                            gggtaatgacgccagcttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgc  >  1:256638‑M2/1‑1 (MQ=255)
                                                                                                                                            |                                                                                                                                              
CAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCT  >  NC_000913/1292899‑1293181

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.