New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 379029936 (0.920)4 (0.110) 4/266 5.1 10.8% intergenic (‑218/+21) waaH/tdh LPS(HepIII)‑glucuronic acid glycosyltransferase/L‑threonine 3‑dehydrogenase, NAD(P)‑binding
?NC_000913 = 3790303 32 (0.870)intergenic (‑222/+17) waaH/tdh LPS(HepIII)‑glucuronic acid glycosyltransferase/L‑threonine 3‑dehydrogenase, NAD(P)‑binding
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ATTATTTTTACAGGTGAGAGAGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCTATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGATTTTACATATTTAACAGATTATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGACTGGCCCGAACGCATAGCGTCAAAGCCCTTCTGGAAATCATCGATAGAGAAACGATGGGTAATGATCGGCGAAAGATCGAGGCCAG  >  NC_000913/3790157‑3790435
                                                                                                                                              |                                                                                                                                        
attattTTTACAGGTGAGAGAGTCACTTCAGGGTATAGAGATAATGAGAGCAGCTATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGATTTTACATATTTAACAGATTATCCTCAGATAAAAGGGCTgg                                                                                                                                          <  2:502569/143‑1 (MQ=255)
attattTTTACAGGTGAGAGAGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCTATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGATTTTACATATTTAACAGATTATCCTCAGATAAAAGGGCTgg                                                                                                                                          >  1:258658/1‑143 (MQ=255)
   attTTTACAGGTGAGAGAGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCTATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGATTTTACATATTTAACAGATTATCCTCAGATAAAAGGGCTGGAAt                                                                                                                                       <  1:183118/143‑1 (MQ=255)
   attTTTACAGGTGAGAGAGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCTATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGATTTTACATATTTAACAGAATATCCTCAGATAAAAGGGCTGGAAt                                                                                                                                       >  1:67177/1‑143 (MQ=255)
     ttttACAGGTGAGAGAGTCACTTCAGCGTAGAGAGATAATGAGAGCAGCTATATAAGAGATCAGCACAATTACGAACTCCTTATTACACTGACAGGATTTTACGTATTTAACAGATTATCCTCAGATAAAAGGGCTGGAATAc                                                                                                                                     >  2:683287/1‑143 (MQ=255)
      ttaaCAGGTGAGAGAGTCACTTCAGGGTAAAGAGATAATGAGAGCAGCTATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGATTTTACATATTTAACAGATTATCCTCAGATAAAAGGGCTGGAATAcc                                                                                                                                    <  1:456793/140‑1 (MQ=255)
              tGAGAGAGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCTATCTAGGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGATTTTACATATTTAACAGATTATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTg                                                                                                                            >  1:136092/1‑143 (MQ=255)
                agagagTCACTTCAGGGTAGAGAGATAATGAGAGCAGCTATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGATTTTACATATTTAACAGATTATCCTCAGATAAAAGGGCTGGAATACCAGCGCTTAtt                                                                                                                          >  2:319423/1‑143 (MQ=255)
                    tgTCACTTCGGGGGAGAGCGATAATGAGAGCAGCTATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGATTGTACATATTTAACAGATTATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCgtg                                                                                                                      <  2:553407/142‑1 (MQ=255)
                         cTTCAGGGTAGAGAGATAATGAGAGCAGCTATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGATTTTACATATTTAACAGATTATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAAt                                                                                                                 >  1:264400/1‑143 (MQ=255)
                            cAGGGTAGAGAGATAATGAGAGCAGCTATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGATTTTACATATTTAACAGATTATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATccc                                                                                                              <  2:620991/143‑1 (MQ=255)
                                  agagagGTAAGGAGAGCAGCTATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGATTTTACATATTTAACAGATTATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCa                                                                                                        <  1:270794/143‑1 (MQ=255)
                                  agagagATAATGAGAGCAGCAATATAAGATATCCGCGCCCCTGCGGACTGTGGATGACACTGACAGGATTTTACATATTTAACAGATTATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCa                                                                                                        <  1:518652/143‑1 (MQ=255)
                                              agagCAGCTATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGATTTTACATATTTAACAGATTATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTcc                                                                                            <  2:715300/143‑1 (MQ=255)
                                                  cagcTATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGATTTTACATATTTAACATATTATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGa                                                                                        <  2:145739/143‑1 (MQ=255)
                                                    gcgatataAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGATTTTACATATTTAACAGATTATCCAAAGCTTGCCTTGTTATAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGACt                                                                                      <  1:366369/140‑1 (MQ=255)
                                                     cTATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGATTTTACATATTTAACAGATTATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGACTg                                                                                     >  1:431420/1‑143 (MQ=255)
                                                        tataAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGATTTTACATATTTAACAGATTATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGACTGGcc                                                                                  <  1:459439/143‑1 (MQ=255)
                                                            agagATCAGCACAATTACGAACTCTTCATTACACTGACAGGATTTCACATATTTAACAGATTATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGACTGGCCCGaa                                                                              <  1:438363/143‑1 (MQ=255)
                                                                  gaGCACAATTACTAACTCTTTATTACACTGACAGGATTTTACAGATTTAACAGATTATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGACTGGCCCGAACGCATa                                                                        <  2:264400/142‑1 (MQ=255)
                                                                   aGCACAATTACGAACTCTCTATAACACTGACGCGACCAAACTTCTTTATCAGATTACCCTCAGATCAAAGGGCTCGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGACTGGCCCGAACGCATAg                                                                       <  1:637606/143‑1 (MQ=255)
                                                                              gAACTCTTTATTACACTGACAGGATTTTACATATATAACAGATTAGCCTCAGATAAAAGGGCTGGAATATCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCTGACTGGCCCGAACGCATAGCGTCAAAcccc                                                            >  2:510795/1‑143 (MQ=255)
                                                                                          acacTGACAGGATGATACATATTTAACAGATTATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGACTGGCCCGAACGCATAGCGTCAAAGCCCTCCTGGCAatca                                                >  2:703180/1‑143 (MQ=255)
                                                                                             ccgccAGGATTTTACAGATTTAACAGATTATCCTCAGAGAAAAGGGTTGGAATACCAGCCCTTGTTCGTGTTAATTCCAGCTGAGAATAACTTTCCCGGACTGGCCCGAACGCATAGCGTCAAAGCCCTTCTGGAAATCATCg                                             <  1:285866/139‑1 (MQ=255)
                                                                                                aaaGGATTTTACATATTTAACAGATTATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGACTGGCCCGAACGCATAGCGTCAAAGCCCTTCTGGAAATCATCGATa                                          <  2:461441/141‑1 (MQ=255)
                                                                                                aCAGGATTTTACATATTTAACAGATTATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGACTGGCCCGAACGCATAGCGTCAAAGCCCTTCTGGAAATCATCGATa                                          >  2:41847/1‑143 (MQ=255)
                                                                                                            atatTTAACAGATTATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGACTGGCCCGAACGCATAGCGTCAAAGCCCTTCTGGAAATCATCGATAGAGAAACGATgg                              >  1:134012/1‑143 (MQ=255)
                                                                                                                ttAACAGATTATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGACTGGCCCGAACGCATAGCGTCCAAGCCCGTCTGGAACTCATCGATAGAGAAACGAAGGGGaa                          >  1:391055/1‑143 (MQ=255)
                                                                                                                ttAACAGATTATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGACTGGCCCGAACGCATAGCGTCAAAGCCCTTCTGGAAATCATCGATAGAGAAACGATGGGTaa                          <  1:469029/143‑1 (MQ=255)
                                                                                                                ttAACAGATTATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGACTGGCCCGAACGCATAGCGTCAAAGCCCTTCGGGAAATCATCGATAGAGAAACGAAGGGTaa                          >  2:145966/1‑143 (MQ=255)
                                                                                                                            ccTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTCATCCCAGCTCAGAATAACTTTCCCGGACTGGCCCGAACGCATAGCGTCAAAGCCCTTCTGGAAATCATCGATAGAGAAACGATGGGTAATGATCGGCGaaa              <  1:558095/143‑1 (MQ=255)
                                                                                                                              tCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGACTGGCCCGAACGCATAGCGTCAAAGCCCTTCTGGAAATCATCGATAGAGAAACGATGGGCAATGATCGGCGAAAGa            >  2:29120/1‑143 (MQ=255)
                                                                                                                                aGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGACTGGCCCGAACGCATAGCGTCAAAGCCCTTCTGGAAATCATCGATAGAGAAACGATGGGTAATGATCGGCGAAAGATc          >  1:619488/1‑143 (MQ=255)
                                                                                                                                     aaaGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGACTGGCCCGAACGCATAGCGTCAAAGCCCTTCTGGAAATCATCGATAGAGAAACGATGGGTAATGATCGGCGAAAGATCGAGGc     <  2:431420/143‑1 (MQ=255)
                                                                                                                                      aaGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGACTGGCCCGAACGCATAGCGTCAAAGCCCTTCTGGAAATCATCGATAGAGAAACGATGGGTAATGCTCGGCGAAAGATCGAGGcc    >  2:326049/1‑143 (MQ=255)
                                                                                                                                        gggCTGGTATTCCAGCCCTTGTTCGTGTTAATCCCAGCTTAGAATAACTTTCCCGGACTGGCCCGGACGCCTAGCGTCAAAGGCCATCTGGGAATCATCGATAGAGAAACGATGGGTAATGATCGGCGTACGATTGAGGCAAg  >  2:160735/1‑143 (MQ=255)
                                                                                                                                         ggCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGACTGGCCCGAACGCATAGCGTCAAAGCCCTTCTGGAAATCATCGATAGAGAAACGATGGGTAATGAt                      >  2:6113/1‑122 (MQ=255)
                                                                                                                                         ggCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGACTGGCCCGAACGCATAGCGTCAAAGCCCTTCTGGAAATCATCGATAGAGAAACGATGGGTAATGAt                      <  1:6113/122‑1 (MQ=255)
                                                                                                                                              |                                                                                                                                        
ATTATTTTTACAGGTGAGAGAGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCTATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGATTTTACATATTTAACAGATTATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGACTGGCCCGAACGCATAGCGTCAAAGCCCTTCTGGAAATCATCGATAGAGAAACGATGGGTAATGATCGGCGAAAGATCGAGGCCAG  >  NC_000913/3790157‑3790435

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.