New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3790299	36 (0.920)	4 (0.110)	4/266	5.1	10.8%	intergenic (‑218/+21)	waaH/tdh	LPS(HepIII)‑glucuronic acid glycosyltransferase/L‑threonine 3‑dehydrogenase, NAD(P)‑binding
	?	NC_000913	= 3790303	32 (0.870)					intergenic (‑222/+17)	waaH/tdh	LPS(HepIII)‑glucuronic acid glycosyltransferase/L‑threonine 3‑dehydrogenase, NAD(P)‑binding
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TTTTACAGGTGAGAGAGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCTATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGATTTTACATATTTAACAGATTATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGACTGGCCCGAACGCATAGCGTCAAAGCCCTTCTGGAAATCATCGATAGAGAAACGATGGGTAATGATCGGCGAAAGATCGAGGCCAG  >  NC_000913/3790162‑3790435                                                                                                                                              |                                                                                                                                     ttttACAGGTGAGAGAGTCACTTCAGCGTAGAGAGATAATGAGAGCAGCTATATAAGAGATCAGCACAATTACGAACTCCTTATTACACTGACAGGATTTTACGTATTTAACAGATTATCCTCAGATAAAAGGGCTGGAATAc                                                                                                                                     >  2:683287/1‑143 (MQ=255)  ttaaCAGGTGAGAGAGTCACTTCAGGGTAAAGAGATAATGAGAGCAGCTATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGATTTTACATATTTAACAGATTATCCTCAGATAAAAGGGCTGGAATAcc                                                                                                                                    <  1:456793/140‑1 (MQ=255)          tGAGAGAGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCTATCTAGGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGATTTTACATATTTAACAGATTATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTg                                                                                                                            >  1:136092/1‑143 (MQ=255)            agagagTCACTTCAGGGTAGAGAGATAATGAGAGCAGCTATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGATTTTACATATTTAACAGATTATCCTCAGATAAAAGGGCTGGAATACCAGCGCTTAtt                                                                                                                          >  2:319423/1‑143 (MQ=255)                tgTCACTTCGGGGGAGAGCGATAATGAGAGCAGCTATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGATTGTACATATTTAACAGATTATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCgtg                                                                                                                      <  2:553407/142‑1 (MQ=255)                     cTTCAGGGTAGAGAGATAATGAGAGCAGCTATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGATTTTACATATTTAACAGATTATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAAt                                                                                                                 >  1:264400/1‑143 (MQ=255)                        cAGGGTAGAGAGATAATGAGAGCAGCTATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGATTTTACATATTTAACAGATTATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATccc                                                                                                              <  2:620991/143‑1 (MQ=255)                              agagagGTAAGGAGAGCAGCTATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGATTTTACATATTTAACAGATTATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCa                                                                                                        <  1:270794/143‑1 (MQ=255)                              agagagATAATGAGAGCAGCAATATAAGATATCCGCGCCCCTGCGGACTGTGGATGACACTGACAGGATTTTACATATTTAACAGATTATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCa                                                                                                        <  1:518652/143‑1 (MQ=255)                                          agagCAGCTATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGATTTTACATATTTAACAGATTATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTcc                                                                                            <  2:715300/143‑1 (MQ=255)                                              cagcTATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGATTTTACATATTTAACATATTATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGa                                                                                        <  2:145739/143‑1 (MQ=255)                                                gcgatataAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGATTTTACATATTTAACAGATTATCCAAAGCTTGCCTTGTTATAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGACt                                                                                      <  1:366369/140‑1 (MQ=255)                                                 cTATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGATTTTACATATTTAACAGATTATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGACTg                                                                                     >  1:431420/1‑143 (MQ=255)                                                    tataAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGATTTTACATATTTAACAGATTATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGACTGGcc                                                                                  <  1:459439/143‑1 (MQ=255)                                                        agagATCAGCACAATTACGAACTCTTCATTACACTGACAGGATTTCACATATTTAACAGATTATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGACTGGCCCGaa                                                                              <  1:438363/143‑1 (MQ=255)                                                              gaGCACAATTACTAACTCTTTATTACACTGACAGGATTTTACAGATTTAACAGATTATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGACTGGCCCGAACGCATa                                                                        <  2:264400/142‑1 (MQ=255)                                                               aGCACAATTACGAACTCTCTATAACACTGACGCGACCAAACTTCTTTATCAGATTACCCTCAGATCAAAGGGCTCGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGACTGGCCCGAACGCATAg                                                                       <  1:637606/143‑1 (MQ=255)                                                                          gAACTCTTTATTACACTGACAGGATTTTACATATATAACAGATTAGCCTCAGATAAAAGGGCTGGAATATCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCTGACTGGCCCGAACGCATAGCGTCAAAcccc                                                            >  2:510795/1‑143 (MQ=255)                                                                                      acacTGACAGGATGATACATATTTAACAGATTATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGACTGGCCCGAACGCATAGCGTCAAAGCCCTCCTGGCAatca                                                >  2:703180/1‑143 (MQ=255)                                                                                         ccgccAGGATTTTACAGATTTAACAGATTATCCTCAGAGAAAAGGGTTGGAATACCAGCCCTTGTTCGTGTTAATTCCAGCTGAGAATAACTTTCCCGGACTGGCCCGAACGCATAGCGTCAAAGCCCTTCTGGAAATCATCg                                             <  1:285866/139‑1 (MQ=255)                                                                                            aaaGGATTTTACATATTTAACAGATTATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGACTGGCCCGAACGCATAGCGTCAAAGCCCTTCTGGAAATCATCGATa                                          <  2:461441/141‑1 (MQ=255)                                                                                            aCAGGATTTTACATATTTAACAGATTATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGACTGGCCCGAACGCATAGCGTCAAAGCCCTTCTGGAAATCATCGATa                                          >  2:41847/1‑143 (MQ=255)                                                                                                        atatTTAACAGATTATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGACTGGCCCGAACGCATAGCGTCAAAGCCCTTCTGGAAATCATCGATAGAGAAACGATgg                              >  1:134012/1‑143 (MQ=255)                                                                                                            ttAACAGATTATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGACTGGCCCGAACGCATAGCGTCCAAGCCCGTCTGGAACTCATCGATAGAGAAACGAAGGGGaa                          >  1:391055/1‑143 (MQ=255)                                                                                                            ttAACAGATTATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGACTGGCCCGAACGCATAGCGTCAAAGCCCTTCTGGAAATCATCGATAGAGAAACGATGGGTaa                          <  1:469029/143‑1 (MQ=255)                                                                                                            ttAACAGATTATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGACTGGCCCGAACGCATAGCGTCAAAGCCCTTCGGGAAATCATCGATAGAGAAACGAAGGGTaa                          >  2:145966/1‑143 (MQ=255)                                                                                                                        ccTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTCATCCCAGCTCAGAATAACTTTCCCGGACTGGCCCGAACGCATAGCGTCAAAGCCCTTCTGGAAATCATCGATAGAGAAACGATGGGTAATGATCGGCGaaa              <  1:558095/143‑1 (MQ=255)                                                                                                                          tCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGACTGGCCCGAACGCATAGCGTCAAAGCCCTTCTGGAAATCATCGATAGAGAAACGATGGGCAATGATCGGCGAAAGa            >  2:29120/1‑143 (MQ=255)                                                                                                                            aGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGACTGGCCCGAACGCATAGCGTCAAAGCCCTTCTGGAAATCATCGATAGAGAAACGATGGGTAATGATCGGCGAAAGATc          >  1:619488/1‑143 (MQ=255)                                                                                                                                 aaaGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGACTGGCCCGAACGCATAGCGTCAAAGCCCTTCTGGAAATCATCGATAGAGAAACGATGGGTAATGATCGGCGAAAGATCGAGGc     <  2:431420/143‑1 (MQ=255)                                                                                                                                  aaGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGACTGGCCCGAACGCATAGCGTCAAAGCCCTTCTGGAAATCATCGATAGAGAAACGATGGGTAATGCTCGGCGAAAGATCGAGGcc    >  2:326049/1‑143 (MQ=255)                                                                                                                                    gggCTGGTATTCCAGCCCTTGTTCGTGTTAATCCCAGCTTAGAATAACTTTCCCGGACTGGCCCGGACGCCTAGCGTCAAAGGCCATCTGGGAATCATCGATAGAGAAACGATGGGTAATGATCGGCGTACGATTGAGGCAAg  >  2:160735/1‑143 (MQ=255)                                                                                                                                     ggCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGACTGGCCCGAACGCATAGCGTCAAAGCCCTTCTGGAAATCATCGATAGAGAAACGATGGGTAATGAt                      >  2:6113/1‑122 (MQ=255)                                                                                                                                     ggCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGACTGGCCCGAACGCATAGCGTCAAAGCCCTTCTGGAAATCATCGATAGAGAAACGATGGGTAATGAt                      <  1:6113/122‑1 (MQ=255)                                                                                                                                              |                                                                                                                                     TTTTACAGGTGAGAGAGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCTATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGATTTTACATATTTAACAGATTATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGACTGGCCCGAACGCATAGCGTCAAAGCCCTTCTGGAAATCATCGATAGAGAAACGATGGGTAATGATCGGCGAAAGATCGAGGCCAG  >  NC_000913/3790162‑3790435

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.