| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,023,805 | (CTTTA)2→1 | intergenic (+127/‑159) | fliR → / → rcsA | flagellar export pore protein/transcriptional regulator of colanic acid capsular biosynthesis |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2023796 | 2023800 | 5 | 51 [0] | [0] 53 | fliR/rcsA | flagellar export pore protein/transcriptional regulator of colanic acid capsular biosynthesis |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2023801 = | 0 (0.000) | 47 (1.280) | 38/266 | 0.1 | 100% | intergenic (+123/‑167) | fliR/rcsA | flagellar export pore protein/transcriptional regulator of colanic acid capsular biosynthesis |
| ? | NC_000913 | = 2023795 | 0 (0.000) | intergenic (+117/‑173) | fliR/rcsA | flagellar export pore protein/transcriptional regulator of colanic acid capsular biosynthesis | |||||
TTAGTGAATTGCCATTAATATAATTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAATATTTGTTTTAAGCTCACTCACATATCGCAACATTTACTTTACTTTAAGACAATTCCAGGCAAATTATACAACACTTTACGGGATAGTAAGTCCGCCTGAAAAATCGCGAGAGTGGCGCATTAGGTGACCCATGTTGTTCCGTTTAGTCATGATGAAATATTCAGGTAAGGGGAA > NC_000913/2023656‑2023937 | ttaGTGAATTGCCATTAATATAATTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAATATTTGTTTTAAGCTCACTCCCCTATCGCGACAttt < 1:324031‑M2/143‑4 (MQ=255) gTGAATTGCCATTAATATAATTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAATATTTGTTTTAAGCTCACTTACATATCGCAACAtttact < 1:253214‑M2/143‑7 (MQ=255) taaattGACATTCATATAATTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAATATTTGTTTTAAGCTCACTCACATATCGCAACAtttactt > 2:678298‑M2/3‑136 (MQ=255) tGAATTGCCATTAATATAATTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATACCTACGAACATCTTCCAGGATGCTCCTGCATCGAAATATTTGTTTTACGCTCACTCACATATCGCAAAAtttgctt < 1:273532‑M2/143‑8 (MQ=255) aTTGTCATTATTATCATGCTATAAGGTTTATCTGGTTATCCTAAGGATTATCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAATAGTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaa > 2:614359‑M2/1‑133 (MQ=255) aTTGCCATTAATATAATTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAATATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaa > 1:117750‑M2/1‑133 (MQ=255) tGTCATTAATATAATTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAATATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaaga > 2:276083‑M2/1‑131 (MQ=255) ccATTAATATAATTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGTGGCGAAAAATTTATTTTAAGCTCACTCACATATCGCAACAtttactttaagaca < 1:520830‑M2/143‑15 (MQ=255) ataATTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCCGCGGTATCTTTCACTCAAGCTCACTCACATATCGCAACAtttactttaagacaattccagg < 1:521000‑M2/143‑23 (MQ=255) cGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAATATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaatta < 1:476448‑M2/143‑30 (MQ=255) cGTAACGTTTACCATGTTATCCTAAGGATTATCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAATATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaatta > 2:213929‑M2/1‑114 (MQ=255) tAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAATATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaattata > 1:459031‑M2/1‑112 (MQ=255) aCGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAATATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaattataca < 1:548187‑M2/143‑34 (MQ=255) ttATCGTGTTATCCTAAGGATTATCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAATATTTGTTTTAAGCTCACTCACATCTCGCAACAttaactttaagacaattccaggcaaataatacaaaac < 2:129031‑M2/143‑38 (MQ=255) cATGTAATCCTAAGGATTATCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAATCTTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaattatacaacacttta < 2:595158‑M2/143‑42 (MQ=255) aTGTTATCCTAAGGATTATCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAATATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaattatacaacactttac < 2:34623‑M2/143‑43 (MQ=255) tGTTATCCTAAGGATTATCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAATATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaattatacaacactttacg > 1:234923‑M2/1‑100 (MQ=255) gTTATCCTAAGGATTATCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAATATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaattatacaacactttacgg > 1:616993‑M2/1‑99 (MQ=255) cTAAGGATTATCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAATATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaagacactgcgaggcagagtatacaacactttacgggatagt < 1:297565‑M2/143‑51 (MQ=255) tAAGGATTATCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAATATTTGTTTTAAGCTCACTCACATATCGCAACAtttcctttaagacaattcccggccaattatacatccctttcccgtatagtt < 1:189522‑M2/143‑52 (MQ=255) aaGGATTATCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAATATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaattatacaacactttacgggatagtaa < 1:51257‑M2/143‑53 (MQ=255) ttATCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAATATTTGTTTTAAGCTCACTCACATATAATACCCactacattaagacaattccaggcaaattatacaacactttacgggatagtaagtccg < 1:330259‑M2/143‑58 (MQ=255) cGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAATATTTGTTTTAAGCTCACACACATATCGCAACAtttactttaagacacatccaggcaaattatacaacactttacgggatagtaagaccgcatga < 2:35689‑M2/143‑63 (MQ=255) gAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAATATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaattatacaacactttacgggctagtacgtccgcctgac < 1:252464‑M2/143‑64 (MQ=255) aaaaaTTATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAATATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaattatacaacactttacgggatagtaagtccgcctgaaa > 2:298001‑M2/1‑79 (MQ=255) aaaaaTAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAATATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaattatacaacactttacgggatagtaagtccgcctgaaa > 2:240576‑M2/1‑79 (MQ=255) aaaaaTAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAATATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaagacaattacaggcaaattatacaacactttacgagatagtgagtccgcatgaaa < 2:426368‑M2/143‑65 (MQ=255) tacctaccAACATCTTCCAGTATACTTCTGCAGCGAAATATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaattatacaacactttacgggatagtaagtccgcctgaaaaatcgcga > 2:8610‑M2/1‑71 (MQ=255) taCCTACGAACATCTTCCATGCTTCTCCTGCAGCGAAATATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaattatacaacactttacgggatagtaagtccgcctgaaaaatcgcga > 2:41374‑M2/1‑71 (MQ=255) taCCTACGAACATCTTCCACGATACTCCTGCAGCGAAATATTTGTTTTAAGTTGACTCACATATCGCAACAtttactttaagacaattccaggcaaattatacaacactttacgggatagtaagtccgcctgaaaaatcgcga > 1:406574‑M2/1‑71 (MQ=255) gacCTACGAACATCTTCCAGGATACTCCTGCAGCGAAATATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaattatacaacactttacgggatagtaagtccgcctgaaaaatcgcga > 2:68553‑M2/2‑71 (MQ=255) tACGAACATCTTCCAGGATACTCCTGCAGCGAAATATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaattatacaacactttacgggatagtaagtccgccagaaaaaacgcgagagt < 2:629482‑M2/143‑77 (MQ=255) gAACATCTTCCAGGATACTCCTGCAGCGAAATATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaattatacaacactttacgggatagtaagtccgcctgaaaaatcgcgagagtggc > 2:188143‑M2/1‑64 (MQ=255) aaCATCTTCCAGGATACTCCTGCAGCGAAATCTTTGTTTTAAGCTCACTCACATATCGCAACAtttagtttacgacaattccaggcaaattatacaacactttccggggtagtaaggccgcctgaagaaacgcgagagggggg < 1:302571‑M2/143‑81 (MQ=255) aaCATCTTCCAGGATACTCCTGCAGCGAAATATTTGTTTTAAGCTCACTCACATATCGCAACAttgcatttaagacagttccaggcaaattatacaacactttagggggtagtaagtcagcttgtagaatggcgagagtggcg < 1:301936‑M2/143‑81 (MQ=255) tcggccacgcTACTCCTGCTGCCAAATATTTGTCTTGAGCTCACTCACATATCGCAACAtttactttagtacatttccaggcaaactatacaagcctttacgggatagtaagtccgcctgaaaaatcgcgagagtggcgcatt > 2:647487‑M2/5‑59 (MQ=255) ggATACTCCTGCAGCGAAATATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaattatacaacactttacgggatagtaagtccgcctgaaaaatcgcgagagtggcgcattaggtgac > 1:218845‑M2/1‑52 (MQ=255) cTGCAGCGAAATATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaattatacaccactttacgggatagtacgtccgcctgaaaaatcgcgagcgtggcgcattaggcgacccaggttg < 2:212673‑M2/143‑100 (MQ=255) cGAAATATTTGTTTTAAGCTCACCCGCATATCGCAACAtttactttacgacaattccaggccaattatacaacactttactggatagtaagtccgcctgaaaaatcgcgagagtggcgcattaggtgacccatgttgttccgt > 2:368211‑M2/1‑38 (MQ=255) gAAATAATTGATTTAAGCTCACTCACATATCGCAACAtttactgtaagacaattccaggcaaattatacaacaatttacgggatagtaagtccgcctgaaaaatcgcgagaatggcgcattaggtgacccatgttgttccgtt > 1:47168‑M2/1‑37 (MQ=255) aaTATTTGTTTTAAGTTCACTCACATATCGCAACAtttactttaagacaattccaggcaaattatacaactctttacgggatagtaagtccgcctgaaaaatcgcgagagtggcgcattaggtgacccatgttgttccgttta > 2:25052‑M2/1‑35 (MQ=255) tttGTTTTAAGCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaattatacaacactttacgggatagtaagtccgcctgaaaaatcgcgagagtggcgcattaggtgacccatgttgttccgtttagtca < 2:116756‑M2/143‑113 (MQ=255) ttttAAGCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaattatacaacactttacgggatagtaagtccgcctgaaaaatcgcgagagtggcgcattaggtgacccatgttgttccgtttagtcatgat < 1:520258‑M2/143‑117 (MQ=255) ttAAGCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaattatacaacactttacgggatagtaagtccgcctgaaaaatcgcgagagtggcgcattaggtgacccatgttgttccgcctagttattatgg < 1:59220‑M2/143‑119 (MQ=255) ctcacATATCGCAACAtttactttaagacaattccaggcaaattatacaacactttacgggatagtaagtccgcctgaaaaatcgcgagagtggcgcattaggtgacccatgttgttccgtttagtcatgatgaaatattcag > 1:43477‑M2/1‑16 (MQ=255) ctcacATATCGCAACAtttactttaagacaattccaggcaaattatacaacactttacgggatagtaagtccgcctgaaaaatcgcgagagtggcgcattaggtgacccatgttgttccgtttagtcatgatgaaatattcag > 2:189522‑M2/1‑16 (MQ=255) tcacATATCGCAACAtttactttaagacaattccaggcaaattatacaacactttacgggatagtaagtccgcctgaaaaatcgcgagagtggcgcattaggtgacccatgttgttccgtttagtcatgatgaagtatgcagg < 2:679722‑M2/143‑129 (MQ=255) atatCGCAACAtttactttaagacaattccaggcaaattatacaacactttacgggatagtaagtccgcctgaaaaatcgcgagagtggcgcattaggtgacccatgttgttccgtttagtcatgatgaaatattcaggtaag < 2:318621‑M2/143‑133 (MQ=255) cGCAACAtttactttaagacaattccaggcaaattatacaacactttacgggatagtaagtccgcctgaaaaatcgcgagagtggcgcattaggtgacccatggtgttacgacgagcccagatgaactagacagctaagggga < 2:657010‑M2/143‑137 (MQ=255) cGCAACActtactttaagacaattccaggcaaattatacaacactttacgggatagtaagtccgcctgaaaaatcgcgagagtggcgcattaggtgacccatgttgttccgtttagtcatgatgaaatattcaggtaagggga > 1:291974‑M2/1‑7 (MQ=255) atttactttaagacaattccaggcaaattatacaacactttacgggatagtaagtccgcctgaaaaatcgcgagagtggcgcattaggtgacccatgttgttccgtttagtcatgatgaaatattcaggtaaggggaattatc > 1:34623‑M2/1‑1 (MQ=255) | TTAGTGAATTGCCATTAATATAATTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAATATTTGTTTTAAGCTCACTCACATATCGCAACATTTACTTTACTTTAAGACAATTCCAGGCAAATTATACAACACTTTACGGGATAGTAAGTCCGCCTGAAAAATCGCGAGAGTGGCGCATTAGGTGACCCATGTTGTTCCGTTTAGTCATGATGAAATATTCAGGTAAGGGGAA > NC_000913/2023656‑2023937 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |