Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	3,815,859	Δ82 bp		[rph]–[rph]	[rph], [rph]

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	3815859	3815940	82	66 [0]	[0] 66	[rph]–[rph]	[rph],[rph]

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3815858	0 (0.000)	63 (1.120)	49/264	0.1	100%	pseudogene (24/48 nt)	rph	ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH
	?	NC_000913	3815941 =	0 (0.000)					pseudogene (609/669 nt)	rph	ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH

ACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTC  >  NC_000913/3815717‑3816000                                                                                                                                              |                                                                                                                                               acacCTGCATGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCCTCTTACTTTTCTACAGACAAAAAAAAGGCGACTCACCAGTCGCCTTAAAAATCCGTTTGCCAGCGCCGCCTTCTGCc                                                                                                                                               >  2:1075427‑M1/1‑142 (MQ=255)      tgcttgctAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtccc                                                                                                                                          <  2:642182‑M1/143‑7 (MQ=255)             tcatcgcaaatTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACCAAAAAAAGGCGACTCATCAGTCGCCTCAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgcccgctgcact                                                                                                                                   >  2:1023439‑M1/5‑130 (MQ=255)             tAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAACGCGCCTCATCAGTCGCCCTACAAACCCGCTTGCCAGCGCCGCCTTCTGCcgtcccctgcact                                                                                                                                   >  2:72852‑M1/1‑130 (MQ=255)                gcgcAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCGTCGCTCCTCATCGTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacctca                                                                                                                                >  2:473879‑M1/1‑127 (MQ=255)                 cgcAACTCCAATACAGTGTCGCTGTTATCTTTTCCTGCCTTCGCTCCTCATCTTACTTTTCTACAGACCACAAACAGGCGCCTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaa                                                                                                                               <  2:162926‑M1/143‑18 (MQ=255)                 cgcAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACGCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaa                                                                                                                               <  1:457687‑M1/143‑18 (MQ=255)                 cacacattcaaCAAACTGGTGCTGATATGGTTTCATCGCCTCGCTCCTCATCTTACCTTTCTACAGACTAACAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTTCcgtcccctgcacttcaa                                                                                                                               <  2:163773‑M1/138‑18 (MQ=255)                  gcAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcact                                                                                                                              >  1:165151‑M1/1‑125 (MQ=255)                  gcAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaat                                                                                                                              >  1:636867‑M1/1‑125 (MQ=255)                       tgcaaTAAACTGGCGCTGAGAGGGGGGCAGGCCGTCGCTCCTCATCGTACGTGGCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAGTCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgc                                                                                                                         <  1:234208‑M1/141‑24 (MQ=255)                         cAATAACCTGGCGCTGATATCGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATTCGTCTCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgc                                                                                                                       <  1:689761‑M1/143‑26 (MQ=255)                           aTAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTTAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgccc                                                                                                                     <  2:792173‑M1/143‑28 (MQ=255)                            tAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttccctgatgcgcccg                                                                                                                    >  1:32612‑M1/1‑115 (MQ=255)                                 ttccgctgaTCTTGTTTCATCTCTTCTCTCCTCATCTTGCTTTTCTACAGACAAAAAAAAGGCTACTCACCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttc                                                                                                               <  2:985354‑M1/140‑34 (MQ=255)                                  ggCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcg                                                                                                              <  1:824598‑M1/143‑35 (MQ=255)                                   gcgcTGCTATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACACAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgctgcgcccgacttcgg                                                                                                             >  1:181634‑M1/1‑108 (MQ=255)                                      cTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgctcgtcttccatca                                                                                                          >  1:398645‑M1/1‑105 (MQ=255)                                        gATATGGTTTCATGCCTTCGCCCCTCATCTTACTTTTCGACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatc                                                                                                        <  2:1054853‑M1/143‑41 (MQ=255)                                          tatGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCACCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCATCTGCctccccctgcactcccatgatgcgcccctcttctgtcacaac                                                                                                      >  2:612446‑M1/1‑101 (MQ=255)                                             ggTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactac                                                                                                   >  1:421139‑M1/1‑98 (MQ=255)                                                      ccTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtc                                                                                          >  1:298343‑M1/1‑89 (MQ=255)                                                      ccTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtc                                                                                          >  1:479626‑M1/1‑89 (MQ=255)                                                       cTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatccgcccgtcttcggtcctcactgccttcatgtct                                                                                         >  2:694154‑M1/1‑88 (MQ=255)                                                         tCGCTCCTCATCTTACTTTTCTACAGACACAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggt                                                                                       <  1:430879‑M1/143‑58 (MQ=255)                                                           gCTCCTCATCTTACTTTTCTACAGACAAAGAAAAGGCGGCCCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtct                                                                                     <  2:32612‑M1/143‑60 (MQ=255)                                                             tcctcATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctcc                                                                                   >  2:253167‑M1/1‑82 (MQ=255)                                                                       aCTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagt                                                                         >  1:927261‑M1/1‑72 (MQ=255)                                                                         ttttCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAACATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtct                                                                       <  2:1088201‑M1/143‑74 (MQ=255)                                                                         ttttCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTAGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgtacaagtcggtctctgcggccgagtct                                                                       >  2:710209‑M1/1‑70 (MQ=255)                                                                             catcagaCAAAACAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGGGCCGCCTTCTGCcgtcccctgcacttcgatgatgcgcccgtcttcggtcatcacgacgttcaggtcggtctctgcggcagagtcttcaa                                                                   <  2:165151‑M1/140‑78 (MQ=255)                                                                                gagACAAAAAAACGGCGACTCATCAGTCGCCTTAACAGTCCGGTTGCCAGCGCCGCCTTCTGTcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgt                                                                <  2:469641‑M1/142‑81 (MQ=255)                                                                                 aGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatacgcccgtcttcggtcatcactacgttcatgtcggtctctgcttcagagtcttcaacgta                                                               >  1:353286‑M1/1‑62 (MQ=255)                                                                                  gACAAACAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctacacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtat                                                              <  1:1047959‑M1/143‑83 (MQ=255)                                                                                  gACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccttcttcgctcatcactacgttcatgtcagtcaatacagcaaaatattcaacgtat                                                              >  1:78024‑M1/1‑61 (MQ=255)                                                                                   aCAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATAAGATTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccggcttcggtcataccgaggttcatgtccgtctcgccggccgggtcttcaaggtatt                                                             >  2:185006‑M1/1‑60 (MQ=255)                                                                                     aaaaaaaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcactgatgcgcccgtcttcggtcctcaatgcggcgctgtcggtctcttcggccgcgtcctccacgtatttc                                                           >  1:200651‑M1/1‑58 (MQ=255)                                                                                     aaaaaaaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcctcactcggatcaacacggtctctgcggcagagtcttcaacgtcttcc                                                           >  2:771356‑M1/1‑58 (MQ=255)                                                                                     aaaaaaaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattcc                                                           >  1:85110‑M1/1‑58 (MQ=255)                                                                                     aaaaaaaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagaggcttgcacgtattcc                                                           >  1:202368‑M1/1‑58 (MQ=255)                                                                                      aaaaaaaGGCGACTCATCAGTCGCCTTAAAAATCCGTTCGCCAGCGCCGGCGTCGGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattcca                                                          <  1:406418‑M1/143‑87 (MQ=255)                                                                                        tttaaggcGACTGATGAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttccatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccaga                                                        >  2:951871‑M1/4‑55 (MQ=255)                                                                                        aaaaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccaga                                                        <  2:198743‑M1/143‑89 (MQ=255)                                                                                         aaaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagat                                                       <  1:931452‑M1/143‑90 (MQ=255)                                                                                           aaGGCGACTGATGAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggt                                                                                       >  1:558265‑M1/1‑52 (MQ=255)                                                                                           aaGGCGACTGATGAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggt                                                                                       <  2:558265‑M1/109‑58 (MQ=255)                                                                                                  ctcctcAGTCGCCTGAAAAATCAGTTTGCCAGCGCCGCCTTCGGCcgtcccctgcacttcagtgatgcgcccgtcttcggtcatcactccgttcatggcgggctctgcggcagagtcttcaacgtattccagatcgcaaaccg                                              <  2:916639‑M1/143‑99 (MQ=255)                                                                                                   ccctcagtcGCCTTAAAAATCTGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgc                                             <  2:637202‑M1/140‑100 (MQ=255)                                                                                                      tcaGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcgaggcttctgtcatcactacgttcatgtcggtctctgcggcagaggcttcaacgtattccagatcgcaaaccgcttc                                          >  2:529358‑M1/1‑41 (MQ=255)                                                                                                       ccgtcGCCTTAAAAATCAGTTGGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcg                                         <  2:900679‑M1/141‑104 (MQ=255)                                                                                                       caGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcg                                         <  1:963042‑M1/143‑104 (MQ=255)                                                                                                         gTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttccacgtcttccagatcgcaaaccgcttcgcc                                       >  1:24159‑M1/1‑38 (MQ=255)                                                                                                           cGCCTGCAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgt                                     <  2:460151‑M1/143‑108 (MQ=255)                                                                                                            gCCTCAAAAATCAGTTCGCCACCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcaccacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgtt                                    <  2:91636‑M1/143‑109 (MQ=255)                                                                                                             ccTTAAAAATCAGTTTGCCAGCGCCGCATTCTGTcgttggctgtacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttc                                   <  1:741514‑M1/143‑110 (MQ=255)                                                                                                              cTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttca                                  <  2:421139‑M1/143‑111 (MQ=255)                                                                                                                   aaaTCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtatgccagatcgcacaccgcttcgccgttcacaatt                             >  2:378396‑M1/1‑28 (MQ=255)                                                                                                                        ggtTTGCCAGCGCCGCCTTCTGCcgtcccctgctttgcaattatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgac                        <  2:479626‑M1/142‑121 (MQ=255)                                                                                                                        aGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatgactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgac                        <  1:551657‑M1/143‑121 (MQ=255)                                                                                                                        aGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgac                        <  2:298343‑M1/143‑121 (MQ=255)                                                                                                                              ccgccgccgtcgtcTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcagcactacgttcatgtcggtctctgcggcagagtcttcaacttattccagatcgcaaaccgcttcgccgttcacaattccgacagaaac                  <  2:288716‑M1/139‑127 (MQ=255)                                                                                                                                 gcgcCGCCTTCTGTcgtcccctgcacttcaatgatgcgcctgtgttcggtcatcactacgttcatgtcggtcgctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgc               <  2:438711‑M1/143‑130 (MQ=255)                                                                                                                                 gcgcCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaacccgcttcgccgttcacaattccgacagaaactgc               >  1:12855‑M1/1‑14 (MQ=255)                                                                                                                                          tCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggctaccat      >  1:667770‑M1/1‑5 (MQ=255)                                                                                                                                             gCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggctaccatccc   <  2:636867‑M1/143‑142 (MQ=255)                                                                                                                                              ccgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggccgagtcttcaacgtattccagatcgcaaaacgattcgccgttcacaattccgacagcaaatgcggctacgctctct  >  2:788679‑M1/1‑1 (MQ=255)                                                                                                                                              |                                                                                                                                               ACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTC  >  NC_000913/3815717‑3816000

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑