Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 3,815,859 Δ82 bp [rph][rph] [rph], [rph]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 3815859 3815940 82 65 [0] [0] 65 [rph]–[rph] [rph],[rph]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 38158580 (0.000)60 (1.180) 48/264 0.1 100% pseudogene (24/48 nt) rph ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH
?NC_000913 3815941 = 0 (0.000)pseudogene (609/669 nt) rph ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH

GCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTC  >  NC_000913/3815723‑3816000
                                                                                                                                       |                                                                                                                                              
gcttgctAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccc                                                                                                                                         <  1:23949‑M1/143‑8 (MQ=255)
 attgctaAGCGAAAAGTCAATAAACGGGCGCTGATATGGTGTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccct                                                                                                                                        <  1:369022‑M1/142‑9 (MQ=255)
     ctAAGCGCAAATTCAAGAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCAGCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcac                                                                                                                                    <  2:343143‑M1/143‑13 (MQ=255)
      tAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGCCAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcact                                                                                                                                   >  2:355535‑M1/1‑130 (MQ=255)
      tAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTCCTGCcgccccctgcact                                                                                                                                   >  2:264610‑M1/1‑130 (MQ=255)
           gcAAGTTCAATAAACTGGCGCTGATATGGTTGCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaat                                                                                                                              <  1:528640‑M1/143‑19 (MQ=255)
           gcAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaat                                                                                                                              >  2:530071‑M1/1‑125 (MQ=255)
             caatTCAATAAACTGCCGCTGATAGGGTTTCATGCCATCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatga                                                                                                                            <  2:82866‑M1/142‑21 (MQ=255)
                ttCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGCCTCATCCGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttccatgatgc                                                                                                                         >  2:891028‑M1/1‑120 (MQ=255)
                  cAATCAACAGGCACTGACATTGTTTCATGCCTTCGCTCCTCACCTGACTGCCCTCCAGACCAAAAAAAGGCGACTCATCAGTCGCCTTAAACATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgc                                                                                                                       <  1:327962‑M1/143‑26 (MQ=255)
                  cAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAATGCGATTCATTAGTCGCATTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgc                                                                                                                       <  1:803225‑M1/143‑26 (MQ=255)
                    aTAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgccc                                                                                                                     >  2:424431‑M1/1‑116 (MQ=255)
                      aaaCTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACCCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgc                                                                                                                   >  2:609076‑M1/1‑114 (MQ=255)
                         cTGGTGCTGTTATGGTTTCATGCCTTCGCGCCTCATCTTACTGTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtctt                                                                                                                <  2:823768‑M1/143‑33 (MQ=255)
                          tgtagctgagATGGTTTCAGGCCTTCGCGCCTCATTTTACTTTTCTACTTACCAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttc                                                                                                               <  2:881259‑M1/139‑34 (MQ=255)
                            gcgcTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcgg                                                                                                             <  1:407129‑M1/143‑36 (MQ=255)
                             cgcTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGTGACTCATCGGTCGCCTTAAAACTCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggt                                                                                                            <  1:518292‑M1/143‑37 (MQ=255)
                                tGATATGGCTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcat                                                                                                         <  1:527902‑M1/143‑40 (MQ=255)
                                  atatGGTTGCACGCCTTCGCTCCCCATCTTACTTTTCGACAGACAAAAAAAAGGCGACGCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatca                                                                                                       <  1:852757‑M1/143‑42 (MQ=255)
                                    atGGTTTCATGCCGTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcact                                                                                                     <  2:448399‑M1/143‑44 (MQ=255)
                                       gTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcagtgatgcccccgtctccggtcatcactgag                                                                                                  >  2:342352‑M1/1‑97 (MQ=255)
                                       gTTCCATGCCTGCGCCCCTCGTCGTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacg                                                                                                  <  2:728932‑M1/143‑47 (MQ=255)
                                        tttCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcgggcaccactacct                                                                                                 >  2:891524‑M1/1‑96 (MQ=255)
                                          tCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcctcgctcatcactacgtcc                                                                                               >  2:718317‑M1/1‑94 (MQ=255)
                                                cTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcccccgtcttcggtcatccccccgttcctgtag                                                                                         >  2:444714‑M1/1‑88 (MQ=255)
                                                  tctctcctcaacTTACCTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggt                                                                                       <  2:139231‑M1/140‑58 (MQ=255)
                                                      tcctcATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCCCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcctccctacgctcatggcggtctct                                                                                   >  2:131880‑M1/1‑82 (MQ=255)
                                                        ctcATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCATTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgc                                                                                 >  1:986457‑M1/1‑80 (MQ=255)
                                                             cTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctacagcag                                                                            >  1:605448‑M1/1‑75 (MQ=255)
                                                              ttcctttCCTACCGACAAAAAGAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcaga                                                                           <  2:615811‑M1/140‑70 (MQ=255)
                                                              ttACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCCGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcaga                                                                           <  1:901713‑M1/143‑70 (MQ=255)
                                                                    tgctaCAGACAAAAAAAAGGCGACTCCTCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttc                                                                     <  2:562892‑M1/141‑76 (MQ=255)
                                                                       tACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcgctcatcactacgttcatatccgcctctgccgcagagtctccaac                                                                  >  1:125761‑M1/1‑65 (MQ=255)
                                                                       tACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcgtcggtcctcactacgttcatgccggtctctgcggccgagtcttcacc                                                                  >  2:811108‑M1/1‑65 (MQ=255)
                                                                           gACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgctgcagagtattcaacgtat                                                              >  1:607562‑M1/1‑61 (MQ=255)
                                                                              aaaaaaaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcgagcatcactacgttcatctcggtctctgcggccaggtattcaacgtattcc                                                           >  2:957947‑M1/1‑58 (MQ=255)
                                                                              aaaaaaaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcccgcgttttggggcacccccacgttcatgtcggtcgctgcggcagagtcttcaacgtattcc                                                           >  2:208379‑M1/1‑58 (MQ=255)
                                                                               aaaaaaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattcca                                                          <  1:530071‑M1/143‑87 (MQ=255)
                                                                               aaaaaaaGCCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgaggcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattcca                                                          <  2:610894‑M1/143‑87 (MQ=255)
                                                                                  agaaggCAACTCATCGGTCGCCTTACAAGTCAGTTTGCATGCGCCGCCTTCTGTcctccccttcacttcactgatgcgcccgtcttcggtcatcactacgttcatgtcggtcgctgcggcagagtcttcaacgtattccagat                                                       <  2:650875‑M1/141‑90 (MQ=255)
                                                                                  aaaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatacagcgcctcaatgcctttatcattacgttcatgtcggtctctgcggcagagtcttcaacgtattccagat                                                       <  1:37855‑M1/143‑90 (MQ=255)
                                                                                  aaaaGGCGACTCATCAGTCGCCTTAAAAACCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagat                                                       <  1:891527‑M1/143‑90 (MQ=255)
                                                                                   aaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttctatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatc                                                      <  2:533931‑M1/143‑91 (MQ=255)
                                                                                       gCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcac                                                  >  1:581673‑M1/1‑49 (MQ=255)
                                                                                          aCTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgaagtccagatcgcaaacc                                               >  1:674819‑M1/1‑46 (MQ=255)
                                                                                              atcaGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgctcccgtcttcggtcgtcactacgttcctgtcggtctctgcggcagagtcctccccgtcttccaggtcccaaaccgctt                                           >  1:105519‑M1/1‑42 (MQ=255)
                                                                                                caGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcg                                         <  1:464008‑M1/143‑104 (MQ=255)
                                                                                                     gcccgaaaaatcagtTCGGCAGCGCCGCCTTCGGCcgccccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgtggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgtt                                    <  1:264610‑M1/138‑109 (MQ=255)
                                                                                                              aTCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagcgtcttcaacgtattccagatcacaaaccgcttcgccgttcaacattcc                           >  1:642353‑M1/1‑26 (MQ=255)
                                                                                                              aTCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattcc                           >  1:910699‑M1/1‑26 (MQ=255)
                                                                                                               tCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccg                          >  2:357144‑M1/1‑25 (MQ=255)
                                                                                                                 aGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgac                        <  1:424431‑M1/143‑121 (MQ=255)
                                                                                                                 aGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgac                        <  1:153073‑M1/143‑121 (MQ=255)
                                                                                                                  gtgtgccAGCGCCGCCTTCTGGctccccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgaca                       <  2:907863‑M1/140‑122 (MQ=255)
                                                                                                                   tttGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgtccg                      >  1:904591‑M1/1‑21 (MQ=255)
                                                                                                                         aGCTCCGCGTTCTGCcgtcccccgcacctcaatgatgcgcccggcttcggtcatccctacgttcatgtcggcctctgcggcatagtctttaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactg                <  1:783794‑M1/143‑129 (MQ=255)
                                                                                                                         aGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactg                >  2:68498‑M1/1‑15 (MQ=255)
                                                                                                                          gcgcCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgtccacaattccgacagacactgc               >  2:98569‑M1/1‑14 (MQ=255)
                                                                                                                          gcgcCGCCTTCTGCcgtcccctacacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagcgtcttcaacgtattccagatcgccaaccgcttcgccgttcacaattgcgacagatactgc               >  2:202895‑M1/1‑14 (MQ=255)
                                                                                                                            gcccccTTCTGTcggctcttgctcttcaatgctgcgcccgtcttctgtcatcacgccgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcgg             <  2:857415‑M1/143‑132 (MQ=255)
                                                                                                                                ccTTCTGTcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgtcccccaacccaacagaaactgcgactac         >  2:468883‑M1/1‑8 (MQ=255)
                                                                                                                                     tGCcgtgccctgcacttcactgcgtggcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagcgtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggctaccatcc    <  2:470927‑M1/143‑141 (MQ=255)
                                                                                                                                     tGCcgtcctctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggctaccatcc    <  2:220541‑M1/143‑141 (MQ=255)
                                                                                                                                     tGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggctaccatcc    <  1:355535‑M1/143‑141 (MQ=255)
                                                                                                                                       ccgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggctaccatccct  >  1:170025‑M1/1‑1 (MQ=255)
                                                                                                                                       |                                                                                                                                              
GCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTC  >  NC_000913/3815723‑3816000

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: