New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 301127133 (0.890)3 (0.080) 3/276 5.2 8.8% coding (1244/1386 nt) hyuA D‑stereospecific phenylhydantoinase
?NC_000913 = 3011293 30 (0.830)coding (1266/1386 nt) hyuA D‑stereospecific phenylhydantoinase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TGCCCGCCAGGTTGTTTGGCCTGTGGCCGCAAAAAGGATTATTAGCGCCCGGTTCCGACGGCGACGTGGTGATTATCGACCCACGTCAGAGCCAACAAATTCAGCATCGCCATCTCCACGACAACGCCGACTACTCGCCATGGGAGGGTTTTACCTGTCAGGGCGCGATTGTCAGAACCTTATCCCGTGGTGAAACGATTTTCTGTGACGGCACCTTTACAGGCAAAGCCGGGCGAGGTCGTTTCCTGCGACGCAAACCGTTTGTCCCTCCCGTGCTCTA  >  NC_000913/3011133‑3011412
                                                                                                                                          |                                                                                                                                             
tGCCCGCCAGGTTGTTTGGCCTGTGGCCGCAAAAAGGATTATTAGCGCCCGGTTCCGACGGCGACGTGGTGATTATCGACCCACGTCAGAGCCAACAAATTCAGCATCGCCATCTCCACGACAACGCCGACTACTCGCCATgg                                                                                                                                           <  2:344736/143‑1 (MQ=255)
    cGCCAGGTTGTTTGGCCTGTGGCCGCAAAAAGGATTATTAGCGCCCGGTTCCGACGGCGACGTGGTGATTATCGACCCACGTCAGAGCCAACAAATTCAGCATCGCCATCTCCACGACAGCGCCGACTACTCGCCCTggggcg                                                                                                                                       >  2:498633/1‑140 (MQ=255)
     gCCAGGTTGTTTGGCCTGTGGCCGCAAAAAGGATTATTAGCGCCCGGTTCCGACGGCGACGTGGTGATTATCGACCCACGTCAGAGCCAACAAATTCAGCATCGCCATCTCCACGCCAACGCCGACTACTCGCCATGCGacgc                                                                                                                                      >  1:257465/1‑140 (MQ=255)
          gttgtgTGGCCTGTGGCCGCAAAAAGGATTATTAGCGCCCGGTGCCGACGGCGACGTGGTGATTATCGACCCACGTCAGAGCCAACAAATTCAGCATCGCCATCTCCACGACAACGCCGACTACTCGCCATGGGAGGGTTTTa                                                                                                                                 <  1:285844/143‑1 (MQ=255)
             gttTGGCCTGTGGCCGCAAAAAGGATTATTAGCGCCCGGTTCCGACGGCGACGTGGTGATTATCGACCCACGTCAGAGCCAACAAATTCAGCATCGCCATCTCCACGACAACGCCGACTACTCGCCATGGGAGGGTTTTACCt                                                                                                                              <  2:375814/143‑1 (MQ=255)
              tttGGCCTGTGGCCGCAAAAAGGATTATTAGCGCCCGGTTCCGACGGCGACGTGGTGATTATCGACCCACGTCAGAGCCAACAAATTCAGCATCGCCATCTCCACGACAACGCCGACTACTCGCCATGGGAGGGTTTTCCCTg                                                                                                                             >  1:265347/1‑143 (MQ=255)
                 ggCCTGTCCCCGCCAAAATCATTATTAGCGCCCGGTTCCTACTGCTACGTGGTGATTTTCGACTCTCGTCAGAGACAACAAATTCAGCATCGCCATCTCCACGACAACGCCGACTACTCGCCATGGGAGGGTTTTACCTGTCa                                                                                                                          <  1:12249/143‑1 (MQ=255)
                   ccTGTGGCCGCAAAAAGGATTATTAGCGCCCGGTTCCGACGGCGACGTGGTGATTATCGACCCACGTCAGAGCCAACAAATTCAGCATCGCCATCTCCACGACAACGCCGACTACTCGCCATGGGAGGGTTTTACCTGTCAgg                                                                                                                        >  1:513887/1‑143 (MQ=255)
                      gtgGCCGCAAAAAGGATTATTAGCGCCCGGTTCCGACGGCGACGTGGTGATTATCGACCCACGTCAGAGCCAACAAATTCAGCATCGCCATCTCCACGACAACGCCGACTACTCGCCATGGGAGGGTTTTACCTGTCAGGgcg                                                                                                                     <  1:612257/143‑1 (MQ=255)
                       gggCCGCAAAAAGGATGATTAGCGCCCGGTTCCGACGGCGCCGTGGTGATTATCGACCCACGTCAGAGCCAACAAATTCAGCATCGCCATCTCCACGACAACGCCGACTACTCGCCATGGGAGGGTTTTACCTGTCAGGgcgc                                                                                                                    <  1:19681/142‑1 (MQ=255)
                                                ccGGTTCCGACGGCGACGTGGTGATTATCGACCCACGTCAGAGCCGAGTTTTTCAGCATCGCCATCTCCTCGTCAACGCCGACTACTCGCCATGGGAGGGTTTTACCTGTCAGGGCGCGATTGTCAGAACCTTATCCCgtggt                                                                                           <  1:637138/143‑1 (MQ=255)
                                                ccGGTTCCGACGGCGACGTGGTGATTATCGACCCACGTCAGAGCCAACAAATTCAGCATCGCCATCTCCACGTCAACGCCGACTACTCGCCATGGGAGGGTTTTACCTGTCAGGGCGCGATTGTCAGAACCTTATCCCgtggt                                                                                           <  1:201330/143‑1 (MQ=255)
                                                    ttCCGACGGCGACGTGGTGATTATCGACCCACGTCAGAGCCAACAAATTCAGCATCGCCATCTCCACGACAACGCCGACTACTCGCCATGGGAGGGTTTTACCTGTCAGGGCGCGATTGTCAGAACCTTATCCCGTGGTGaaa                                                                                       <  1:535499/143‑1 (MQ=255)
                                                                   ggtgATTATCGACCCACGTCAGAGCCAACAAATTCAGCATCGCCATCTCCACGACAACGCCGACTACTCGCCATGGGAGGGTTTTACCTGTCAGGGCGCGATTGTCAGAACCTTATCCCGTGGTGAAACGATTTTCTGTGACg                                                                        <  2:513887/143‑1 (MQ=255)
                                                                    gtgATTATCGACCCACGTCAGAGCCAACAAATTCAGCATCGCCATCTCCACGACAACGCCGACTACTCGCCATGGGAGGGTTTTACCTGTCAGGGCGCGATTGTCAGAACCTTATCCCGTGGTGAAACGATTTTCTGTGACgg                                                                       >  2:595163/1‑143 (MQ=255)
                                                                      gATTATCGACCCACGTCAGAGCCAACAAATTCAGCATCGCCATCTCCACGACAACGCCGACTACTCGCCATGGGAGGGTTTTACCTGTCAGGGCGCGATTGTCAGAACCTTATCCCGTGGTGAAACGATTTTCTGTGACGGCa                                                                     <  1:225352/143‑1 (MQ=255)
                                                                       aTTATCGACCCACGTCAGAGCCAACAAATTCAGCATCGCCATCTCCACGACAACGCCGACTACTCGCCATGGGAGGGTTTTACCTGTCAGGGCGCGATTGTCAGAACCTTATCCCGTGGTGCAACGATTTTCTGTGACGGCAc                                                                    >  1:469203/1‑143 (MQ=255)
                                                                                       agagCCAACGTATTCTGCATCGCCATCTCCACGAGAACGCCGTCTACTCGCCATGGGATGGTTTTACCTTTCAGTGCGCGATTGTCAGAACCTTATCCCGTGGTGAAACGATTTTCTTTGACGTCATCTTTACAGGCAAAGcc                                                    <  2:151799/143‑1 (MQ=255)
                                                                                         agCCAACATATTCAGCATCGCCAGCTCCGCGACACCGCCGACTACTCGCCATGGGTGGGTTTTACCTGTCAGGGCGCGATTGTCAGAACCTTATCCCGTGGTGAAACGATGTTCTGTGACGGCACCTTTACAGGCAAAGCCgg                                                  <  2:426425/143‑1 (MQ=255)
                                                                                                aaaTTCAGCATCGCCATCTCCACGACAACGCCGACTACTCGCCATGGGAGGGTTTTACCTGTCAGGGCGCGATTGTCAGAACCTTATCCCGTGGTGAAACGCTTTTCTGTGACGGCACCTTTCCAGGCAAAGCCGGGCGAggc                                           >  1:40350/1‑142 (MQ=255)
                                                                                                 aactCAGCATCGCCATCCCCACGACAACGCCGACTACTCGCCATGGGAGGGTTTTACCTGTCAGGGCGCGATTGTCAGAACCTTATCCCGTGGTGAAACGATTTTCTGTGACGGCACCTTTACAGGCAAAGCCGGGCGAGGTc                                          <  1:359056/140‑1 (MQ=255)
                                                                                                     cAGCATCGCCATCTCCACGACAACGCCGACTACTCGCCATGGGAGGGTTTTACCTGTCAGGGCGCGATTGTCATAACCTTATCCCGTGGTGAAACGATTTTCTGTGACGGCACGTTTACAGGCAAAGCCGGGCGAGGTCGttt                                      >  1:173016/1‑143 (MQ=255)
                                                                                                       gCATCGCCATCTCCACGACAACGCCGACTACTCGCCATGGGAGGGTTTTACCTGTCAGGGCGCGATTGTCAGAACCTTATCCCGTGGTGAAACGATTTTCTGTGACGGCACCTTTACAGGCAAAGCCGGGCGAGGTCGTTTcc                                    >  2:561108/1‑143 (MQ=255)
                                                                                                          tCGCCATCTCCACGACAACGCCGGCCACTCGCCATGGGAGGGTTTTACCTGCCGAGGCGCGCATGTCAGACACTTATCCCGTGGGGAAATGATTTTCTGTGACGGCACCTTTAGCGGAGAAGGAGGGCGGGGTGGTTGCCTGc                                 >  2:392550/1‑143 (MQ=255)
                                                                                                                 ctcCACGACAACGCCGACTACTCGCCATGGGAGGGTTTTACCTGTCAGGGCGCGATTGTCAGAACCTTATCCCGTGGTGAAACGATTTTCTGTGACGGCACCTTTACAGGCAAAGCCGGGCGAGGTCGTTTCCTGCGACGCaa                          <  1:571188/143‑1 (MQ=255)
                                                                                                                  tcCACGACAACGCCGACTACTCGCCATGGGAGGGTTTTACCTGTCAGGGCGCGATTGTCAGAACCTTATCCCGTGGTGAAACGATTTTCTGTGACGGCACCTTTACAGGCAAAGCCGGGCGAGGTCGTTTCCTGCGACGCaaa                         <  1:513043/143‑1 (MQ=255)
                                                                                                                  tcCACCGCACCGGCGACTCCTCGCCATGGGAGGGTTTTACCTGGCAGGGCGCGATTGTCAGAACCTCATCCCGTGGTGAAACGATTTTCTGTGACGGCACCTTTACAGGCAAAGCCGGGCGAGGTCGTTTCCTGCGACGCaaa                         <  2:555931/143‑1 (MQ=255)
                                                                                                                       gACAACGCCGACTACTCGCCATGGGAGGGTTTTACCTGTCAGGGCGCGATTGTCAGAACCTTATCCCGTGGTGAAACGATTTTCTGTGACGGCACCTTTACAGGCGAAGCCGGGCGAGGTCGTTTCCTGCGACGCAGACCGtt                    >  1:208122/1‑143 (MQ=255)
                                                                                                                       gACAACGCCGACTACTCGCCATGGGAGGGTTTTACCTGTCAGGGCGCGATTGTCAGAACCTTATCCCGTGGTGAAACGATTTTCTGTGACGGCACCTTTACAGGCAAAGCCGGGCGAGGTCGTTTCCTGCGACGCAAACCGtt                    >  1:46922/1‑143 (MQ=255)
                                                                                                                          aaCGCCGACTACTCGCCATGGGAGGGTTTTACCTGTCAGGGCGCGATTGTCAGAACCATATCCCGTGGTGAAACGATTTTCTGTGACGGCACCTTTACAGGCAAAGCCGGGCGAGGTCGTTTCCGGCGACGCAAACCGTTTgg                 >  2:562962/1‑142 (MQ=255)
                                                                                                                              ccGACTACTCGCCATGGGAGGGTTTTACCTGTCAGGGCGCGATTGTCAGAACCTTATCCCGTGGTGAAACGATTTTCTGTGACGGCACCTTTACAGGCAAAGCCGGGCGAGGTCGTTTCCTGCGACGCAAACCGTTTGtccct             >  1:657570/1‑143 (MQ=255)
                                                                                                                                 actactCGCCATGGGAGGGTTTTACCTGTCAGGGCGCGATTGTCAGAACCTCATCCCGTGGTGAAACGATTTTCTGTGACGGCACCTTTACAGGCAAAGCCGGGCGAGGTCGTTTCCTGCGACGCAAACCGTTTGtccctccc          <  1:561999/143‑1 (MQ=255)
                                                                                                                                      tCGCCATGGGAGGGTTTTACCTGTCAGGGCGCGATTGTCAGAACCTTATCCCGTGGTGAAACGATTTTCTGTGACGGCACCTTTACAGGCAAAGCCGGGCGAGGTCGTTTCCTGCGACGCAAACCGTTTGTCCCTCCCGTGct     <  1:441127/143‑1 (MQ=255)
                                                                                                                                         ccATGGGAGGGTTTTACCTGTCAGGGCGCGATTGTCAGAACCTTATCCCGTGGGGAAACGATTTTCTGTGACGGCACCTTTACAGGCAAAGCCGGGCGAGGTCGTTTCCTGCGACGCAAACCGTTTGTCCCTCCCGTGCTCTa  <  2:169844/143‑1 (MQ=255)
                                                                                                                                          |                                                                                                                                             
TGCCCGCCAGGTTGTTTGGCCTGTGGCCGCAAAAAGGATTATTAGCGCCCGGTTCCGACGGCGACGTGGTGATTATCGACCCACGTCAGAGCCAACAAATTCAGCATCGCCATCTCCACGACAACGCCGACTACTCGCCATGGGAGGGTTTTACCTGTCAGGGCGCGATTGTCAGAACCTTATCCCGTGGTGAAACGATTTTCTGTGACGGCACCTTTACAGGCAAAGCCGGGCGAGGTCGTTTCCTGCGACGCAAACCGTTTGTCCCTCCCGTGCTCTA  >  NC_000913/3011133‑3011412

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.