New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 301127133 (0.890)3 (0.080) 3/276 5.2 8.8% coding (1244/1386 nt) hyuA D‑stereospecific phenylhydantoinase
?NC_000913 = 3011293 30 (0.830)coding (1266/1386 nt) hyuA D‑stereospecific phenylhydantoinase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CCTGTGGCCGCAAAAAGGATTATTAGCGCCCGGTTCCGACGGCGACGTGGTGATTATCGACCCACGTCAGAGCCAACAAATTCAGCATCGCCATCTCCACGACAACGCCGACTACTCGCCATGGGAGGGTTTTACCTGTCAGGGCGCGATTGTCAGAACCTTATCCCGTGGTGAAACGATTTTCTGTGACGGCACCTTTACAGGCAAAGCCGGGCGAGGTCGTTTCCTGCGACGCAAACCGTTTGTCCCTCCCGTGCTCTAACCACTGCCAGGGATCTATACA  >  NC_000913/3011152‑3011434
                                                                                                                                             |                                                                                                                                             
ccTGTGGCCGCAAAAAGGATTATTAGCGCCCGGTTCCGACGGCGACGTGGTGATTATCGACCCACGTCAGAGCCAACAAATTCAGCATCGCCATCTCCACGACAACGCCGACTACTCGCCATGGGAGGGTTTTACCTGTCAgg                                                                                                                                              >  1:513887/1‑143 (MQ=255)
   gtgGCCGCAAAAAGGATTATTAGCGCCCGGTTCCGACGGCGACGTGGTGATTATCGACCCACGTCAGAGCCAACAAATTCAGCATCGCCATCTCCACGACAACGCCGACTACTCGCCATGGGAGGGTTTTACCTGTCAGGgcg                                                                                                                                           <  1:612257/143‑1 (MQ=255)
    gggCCGCAAAAAGGATGATTAGCGCCCGGTTCCGACGGCGCCGTGGTGATTATCGACCCACGTCAGAGCCAACAAATTCAGCATCGCCATCTCCACGACAACGCCGACTACTCGCCATGGGAGGGTTTTACCTGTCAGGgcgc                                                                                                                                          <  1:19681/142‑1 (MQ=255)
                             ccGGTTCCGACGGCGACGTGGTGATTATCGACCCACGTCAGAGCCGAGTTTTTCAGCATCGCCATCTCCTCGTCAACGCCGACTACTCGCCATGGGAGGGTTTTACCTGTCAGGGCGCGATTGTCAGAACCTTATCCCgtggt                                                                                                                 <  1:637138/143‑1 (MQ=255)
                             ccGGTTCCGACGGCGACGTGGTGATTATCGACCCACGTCAGAGCCAACAAATTCAGCATCGCCATCTCCACGTCAACGCCGACTACTCGCCATGGGAGGGTTTTACCTGTCAGGGCGCGATTGTCAGAACCTTATCCCgtggt                                                                                                                 <  1:201330/143‑1 (MQ=255)
                                 ttCCGACGGCGACGTGGTGATTATCGACCCACGTCAGAGCCAACAAATTCAGCATCGCCATCTCCACGACAACGCCGACTACTCGCCATGGGAGGGTTTTACCTGTCAGGGCGCGATTGTCAGAACCTTATCCCGTGGTGaaa                                                                                                             <  1:535499/143‑1 (MQ=255)
                                                ggtgATTATCGACCCACGTCAGAGCCAACAAATTCAGCATCGCCATCTCCACGACAACGCCGACTACTCGCCATGGGAGGGTTTTACCTGTCAGGGCGCGATTGTCAGAACCTTATCCCGTGGTGAAACGATTTTCTGTGACg                                                                                              <  2:513887/143‑1 (MQ=255)
                                                 gtgATTATCGACCCACGTCAGAGCCAACAAATTCAGCATCGCCATCTCCACGACAACGCCGACTACTCGCCATGGGAGGGTTTTACCTGTCAGGGCGCGATTGTCAGAACCTTATCCCGTGGTGAAACGATTTTCTGTGACgg                                                                                             >  2:595163/1‑143 (MQ=255)
                                                   gATTATCGACCCACGTCAGAGCCAACAAATTCAGCATCGCCATCTCCACGACAACGCCGACTACTCGCCATGGGAGGGTTTTACCTGTCAGGGCGCGATTGTCAGAACCTTATCCCGTGGTGAAACGATTTTCTGTGACGGCa                                                                                           <  1:225352/143‑1 (MQ=255)
                                                    aTTATCGACCCACGTCAGAGCCAACAAATTCAGCATCGCCATCTCCACGACAACGCCGACTACTCGCCATGGGAGGGTTTTACCTGTCAGGGCGCGATTGTCAGAACCTTATCCCGTGGTGCAACGATTTTCTGTGACGGCAc                                                                                          >  1:469203/1‑143 (MQ=255)
                                                                    agagCCAACGTATTCTGCATCGCCATCTCCACGAGAACGCCGTCTACTCGCCATGGGATGGTTTTACCTTTCAGTGCGCGATTGTCAGAACCTTATCCCGTGGTGAAACGATTTTCTTTGACGTCATCTTTACAGGCAAAGcc                                                                          <  2:151799/143‑1 (MQ=255)
                                                                      agCCAACATATTCAGCATCGCCAGCTCCGCGACACCGCCGACTACTCGCCATGGGTGGGTTTTACCTGTCAGGGCGCGATTGTCAGAACCTTATCCCGTGGTGAAACGATGTTCTGTGACGGCACCTTTACAGGCAAAGCCgg                                                                        <  2:426425/143‑1 (MQ=255)
                                                                             aaaTTCAGCATCGCCATCTCCACGACAACGCCGACTACTCGCCATGGGAGGGTTTTACCTGTCAGGGCGCGATTGTCAGAACCTTATCCCGTGGTGAAACGCTTTTCTGTGACGGCACCTTTCCAGGCAAAGCCGGGCGAggc                                                                 >  1:40350/1‑142 (MQ=255)
                                                                              aactCAGCATCGCCATCCCCACGACAACGCCGACTACTCGCCATGGGAGGGTTTTACCTGTCAGGGCGCGATTGTCAGAACCTTATCCCGTGGTGAAACGATTTTCTGTGACGGCACCTTTACAGGCAAAGCCGGGCGAGGTc                                                                <  1:359056/140‑1 (MQ=255)
                                                                                  cAGCATCGCCATCTCCACGACAACGCCGACTACTCGCCATGGGAGGGTTTTACCTGTCAGGGCGCGATTGTCATAACCTTATCCCGTGGTGAAACGATTTTCTGTGACGGCACGTTTACAGGCAAAGCCGGGCGAGGTCGttt                                                            >  1:173016/1‑143 (MQ=255)
                                                                                    gCATCGCCATCTCCACGACAACGCCGACTACTCGCCATGGGAGGGTTTTACCTGTCAGGGCGCGATTGTCAGAACCTTATCCCGTGGTGAAACGATTTTCTGTGACGGCACCTTTACAGGCAAAGCCGGGCGAGGTCGTTTcc                                                          >  2:561108/1‑143 (MQ=255)
                                                                                       tCGCCATCTCCACGACAACGCCGGCCACTCGCCATGGGAGGGTTTTACCTGCCGAGGCGCGCATGTCAGACACTTATCCCGTGGGGAAATGATTTTCTGTGACGGCACCTTTAGCGGAGAAGGAGGGCGGGGTGGTTGCCTGc                                                       >  2:392550/1‑143 (MQ=255)
                                                                                              ctcCACGACAACGCCGACTACTCGCCATGGGAGGGTTTTACCTGTCAGGGCGCGATTGTCAGAACCTTATCCCGTGGTGAAACGATTTTCTGTGACGGCACCTTTACAGGCAAAGCCGGGCGAGGTCGTTTCCTGCGACGCaa                                                <  1:571188/143‑1 (MQ=255)
                                                                                               tcCACGACAACGCCGACTACTCGCCATGGGAGGGTTTTACCTGTCAGGGCGCGATTGTCAGAACCTTATCCCGTGGTGAAACGATTTTCTGTGACGGCACCTTTACAGGCAAAGCCGGGCGAGGTCGTTTCCTGCGACGCaaa                                               <  1:513043/143‑1 (MQ=255)
                                                                                               tcCACCGCACCGGCGACTCCTCGCCATGGGAGGGTTTTACCTGGCAGGGCGCGATTGTCAGAACCTCATCCCGTGGTGAAACGATTTTCTGTGACGGCACCTTTACAGGCAAAGCCGGGCGAGGTCGTTTCCTGCGACGCaaa                                               <  2:555931/143‑1 (MQ=255)
                                                                                                    gACAACGCCGACTACTCGCCATGGGAGGGTTTTACCTGTCAGGGCGCGATTGTCAGAACCTTATCCCGTGGTGAAACGATTTTCTGTGACGGCACCTTTACAGGCGAAGCCGGGCGAGGTCGTTTCCTGCGACGCAGACCGtt                                          >  1:208122/1‑143 (MQ=255)
                                                                                                    gACAACGCCGACTACTCGCCATGGGAGGGTTTTACCTGTCAGGGCGCGATTGTCAGAACCTTATCCCGTGGTGAAACGATTTTCTGTGACGGCACCTTTACAGGCAAAGCCGGGCGAGGTCGTTTCCTGCGACGCAAACCGtt                                          >  1:46922/1‑143 (MQ=255)
                                                                                                       aaCGCCGACTACTCGCCATGGGAGGGTTTTACCTGTCAGGGCGCGATTGTCAGAACCATATCCCGTGGTGAAACGATTTTCTGTGACGGCACCTTTACAGGCAAAGCCGGGCGAGGTCGTTTCCGGCGACGCAAACCGTTTgg                                       >  2:562962/1‑142 (MQ=255)
                                                                                                           ccGACTACTCGCCATGGGAGGGTTTTACCTGTCAGGGCGCGATTGTCAGAACCTTATCCCGTGGTGAAACGATTTTCTGTGACGGCACCTTTACAGGCAAAGCCGGGCGAGGTCGTTTCCTGCGACGCAAACCGTTTGtccct                                   >  1:657570/1‑143 (MQ=255)
                                                                                                              actactCGCCATGGGAGGGTTTTACCTGTCAGGGCGCGATTGTCAGAACCTCATCCCGTGGTGAAACGATTTTCTGTGACGGCACCTTTACAGGCAAAGCCGGGCGAGGTCGTTTCCTGCGACGCAAACCGTTTGtccctccc                                <  1:561999/143‑1 (MQ=255)
                                                                                                                   tCGCCATGGGAGGGTTTTACCTGTCAGGGCGCGATTGTCAGAACCTTATCCCGTGGTGAAACGATTTTCTGTGACGGCACCTTTACAGGCAAAGCCGGGCGAGGTCGTTTCCTGCGACGCAAACCGTTTGTCCCTCCCGTGct                           <  1:441127/143‑1 (MQ=255)
                                                                                                                      ccATGGGAGGGTTTTACCTGTCAGGGCGCGATTGTCAGAACCTTATCCCGTGGGGAAACGATTTTCTGTGACGGCACCTTTACAGGCAAAGCCGGGCGAGGTCGTTTCCTGCGACGCAAACCGTTTGTCCCTCCCGTGCTCTa                        <  2:169844/143‑1 (MQ=255)
                                                                                                                          gggAGGGTTTTACCTGTCAGGGCGCGATTGTCAGAACCTTATCCCGTGGTGAAACGATTTTCTGTGACGGCACCTTTACAGGCAAAGCCGGGCGAGGGCGTTTCCTGCGACGCAAACCGGTTGTCCCTCCCGTGCTCTAGccc                    >  1:73355/1‑142 (MQ=255)
                                                                                                                                    tcccTGTCAGGGCGCGGTTGTCAGAACCTTATCCCGTGGTTAAACGATTTTCTGTGACGTCACCTTTACAGGCAAAGCCGGGCGAGGTCGTTTCCTGCGACGCAAACCGTTTGTCCCTCCCGTGCTCTAACCACTGCCAGGGa          <  2:11067/141‑1 (MQ=255)
                                                                                                                                    tACCTGTCAGGGCGCGATTGTCAGAACCTTATCCCGTGGTGAAACGATTTTCTGTGACGGCACCTTTACAGGCAAAGCCGGGCGAGGTCGTTTCCTGCGACGCAAACCGTTTGTCCCTCCCGTGCTCTAACCACTGCCAGGGa          <  1:524097/143‑1 (MQ=255)
                                                                                                                                          tCAGGGCGCGATTGCCAGAACCTTATCCCGTGGTGAAACGATTTTCTGTGACGGCACCTTTACAGGCAAAGCCGGGCGAGGTCGTTTCCTGCGACGCAAACCGTTTGTCCCTCCCGTGCTCTAACCACTGCCAGGGATCtata    <  1:498633/143‑1 (MQ=255)
                                                                                                                                            aGGCCGCCATTGTCAGAACCTTCTCCCCTGGTGAAACGATTCTCTGTGACGGCACCTTTACAGGCAAAGCCGGGCGAGGTCGTTTCCTGCGACGCAAACCGTTTGTCCCTCCCGTGCTCTAACCACTGCCAGGGATCTATaca  <  1:392587/143‑1 (MQ=255)
                                                                                                                                             |                                                                                                                                             
CCTGTGGCCGCAAAAAGGATTATTAGCGCCCGGTTCCGACGGCGACGTGGTGATTATCGACCCACGTCAGAGCCAACAAATTCAGCATCGCCATCTCCACGACAACGCCGACTACTCGCCATGGGAGGGTTTTACCTGTCAGGGCGCGATTGTCAGAACCTTATCCCGTGGTGAAACGATTTTCTGTGACGGCACCTTTACAGGCAAAGCCGGGCGAGGTCGTTTCCTGCGACGCAAACCGTTTGTCCCTCCCGTGCTCTAACCACTGCCAGGGATCTATACA  >  NC_000913/3011152‑3011434

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.