New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3011271	33 (0.890)	3 (0.080)	3/276	5.2	8.8%	coding (1244/1386 nt)	hyuA	D‑stereospecific phenylhydantoinase
	?	NC_000913	= 3011293	30 (0.830)					coding (1266/1386 nt)	hyuA	D‑stereospecific phenylhydantoinase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CCTGTGGCCGCAAAAAGGATTATTAGCGCCCGGTTCCGACGGCGACGTGGTGATTATCGACCCACGTCAGAGCCAACAAATTCAGCATCGCCATCTCCACGACAACGCCGACTACTCGCCATGGGAGGGTTTTACCTGTCAGGGCGCGATTGTCAGAACCTTATCCCGTGGTGAAACGATTTTCTGTGACGGCACCTTTACAGGCAAAGCCGGGCGAGGTCGTTTCCTGCGACGCAAACCGTTTGTCCCTCCCGTGCTCTAACCACTGCCAGGGATCTATACA  >  NC_000913/3011152‑3011434                                                                                                                                              |                                                                                                                                              ccTGTGGCCGCAAAAAGGATTATTAGCGCCCGGTTCCGACGGCGACGTGGTGATTATCGACCCACGTCAGAGCCAACAAATTCAGCATCGCCATCTCCACGACAACGCCGACTACTCGCCATGGGAGGGTTTTACCTGTCAgg                                                                                                                                              >  1:513887/1‑143 (MQ=255)    gtgGCCGCAAAAAGGATTATTAGCGCCCGGTTCCGACGGCGACGTGGTGATTATCGACCCACGTCAGAGCCAACAAATTCAGCATCGCCATCTCCACGACAACGCCGACTACTCGCCATGGGAGGGTTTTACCTGTCAGGgcg                                                                                                                                           <  1:612257/143‑1 (MQ=255)     gggCCGCAAAAAGGATGATTAGCGCCCGGTTCCGACGGCGCCGTGGTGATTATCGACCCACGTCAGAGCCAACAAATTCAGCATCGCCATCTCCACGACAACGCCGACTACTCGCCATGGGAGGGTTTTACCTGTCAGGgcgc                                                                                                                                          <  1:19681/142‑1 (MQ=255)                              ccGGTTCCGACGGCGACGTGGTGATTATCGACCCACGTCAGAGCCGAGTTTTTCAGCATCGCCATCTCCTCGTCAACGCCGACTACTCGCCATGGGAGGGTTTTACCTGTCAGGGCGCGATTGTCAGAACCTTATCCCgtggt                                                                                                                 <  1:637138/143‑1 (MQ=255)                              ccGGTTCCGACGGCGACGTGGTGATTATCGACCCACGTCAGAGCCAACAAATTCAGCATCGCCATCTCCACGTCAACGCCGACTACTCGCCATGGGAGGGTTTTACCTGTCAGGGCGCGATTGTCAGAACCTTATCCCgtggt                                                                                                                 <  1:201330/143‑1 (MQ=255)                                  ttCCGACGGCGACGTGGTGATTATCGACCCACGTCAGAGCCAACAAATTCAGCATCGCCATCTCCACGACAACGCCGACTACTCGCCATGGGAGGGTTTTACCTGTCAGGGCGCGATTGTCAGAACCTTATCCCGTGGTGaaa                                                                                                             <  1:535499/143‑1 (MQ=255)                                                 ggtgATTATCGACCCACGTCAGAGCCAACAAATTCAGCATCGCCATCTCCACGACAACGCCGACTACTCGCCATGGGAGGGTTTTACCTGTCAGGGCGCGATTGTCAGAACCTTATCCCGTGGTGAAACGATTTTCTGTGACg                                                                                              <  2:513887/143‑1 (MQ=255)                                                  gtgATTATCGACCCACGTCAGAGCCAACAAATTCAGCATCGCCATCTCCACGACAACGCCGACTACTCGCCATGGGAGGGTTTTACCTGTCAGGGCGCGATTGTCAGAACCTTATCCCGTGGTGAAACGATTTTCTGTGACgg                                                                                             >  2:595163/1‑143 (MQ=255)                                                    gATTATCGACCCACGTCAGAGCCAACAAATTCAGCATCGCCATCTCCACGACAACGCCGACTACTCGCCATGGGAGGGTTTTACCTGTCAGGGCGCGATTGTCAGAACCTTATCCCGTGGTGAAACGATTTTCTGTGACGGCa                                                                                           <  1:225352/143‑1 (MQ=255)                                                     aTTATCGACCCACGTCAGAGCCAACAAATTCAGCATCGCCATCTCCACGACAACGCCGACTACTCGCCATGGGAGGGTTTTACCTGTCAGGGCGCGATTGTCAGAACCTTATCCCGTGGTGCAACGATTTTCTGTGACGGCAc                                                                                          >  1:469203/1‑143 (MQ=255)                                                                     agagCCAACGTATTCTGCATCGCCATCTCCACGAGAACGCCGTCTACTCGCCATGGGATGGTTTTACCTTTCAGTGCGCGATTGTCAGAACCTTATCCCGTGGTGAAACGATTTTCTTTGACGTCATCTTTACAGGCAAAGcc                                                                          <  2:151799/143‑1 (MQ=255)                                                                       agCCAACATATTCAGCATCGCCAGCTCCGCGACACCGCCGACTACTCGCCATGGGTGGGTTTTACCTGTCAGGGCGCGATTGTCAGAACCTTATCCCGTGGTGAAACGATGTTCTGTGACGGCACCTTTACAGGCAAAGCCgg                                                                        <  2:426425/143‑1 (MQ=255)                                                                              aaaTTCAGCATCGCCATCTCCACGACAACGCCGACTACTCGCCATGGGAGGGTTTTACCTGTCAGGGCGCGATTGTCAGAACCTTATCCCGTGGTGAAACGCTTTTCTGTGACGGCACCTTTCCAGGCAAAGCCGGGCGAggc                                                                 >  1:40350/1‑142 (MQ=255)                                                                               aactCAGCATCGCCATCCCCACGACAACGCCGACTACTCGCCATGGGAGGGTTTTACCTGTCAGGGCGCGATTGTCAGAACCTTATCCCGTGGTGAAACGATTTTCTGTGACGGCACCTTTACAGGCAAAGCCGGGCGAGGTc                                                                <  1:359056/140‑1 (MQ=255)                                                                                   cAGCATCGCCATCTCCACGACAACGCCGACTACTCGCCATGGGAGGGTTTTACCTGTCAGGGCGCGATTGTCATAACCTTATCCCGTGGTGAAACGATTTTCTGTGACGGCACGTTTACAGGCAAAGCCGGGCGAGGTCGttt                                                            >  1:173016/1‑143 (MQ=255)                                                                                     gCATCGCCATCTCCACGACAACGCCGACTACTCGCCATGGGAGGGTTTTACCTGTCAGGGCGCGATTGTCAGAACCTTATCCCGTGGTGAAACGATTTTCTGTGACGGCACCTTTACAGGCAAAGCCGGGCGAGGTCGTTTcc                                                          >  2:561108/1‑143 (MQ=255)                                                                                        tCGCCATCTCCACGACAACGCCGGCCACTCGCCATGGGAGGGTTTTACCTGCCGAGGCGCGCATGTCAGACACTTATCCCGTGGGGAAATGATTTTCTGTGACGGCACCTTTAGCGGAGAAGGAGGGCGGGGTGGTTGCCTGc                                                       >  2:392550/1‑143 (MQ=255)                                                                                               ctcCACGACAACGCCGACTACTCGCCATGGGAGGGTTTTACCTGTCAGGGCGCGATTGTCAGAACCTTATCCCGTGGTGAAACGATTTTCTGTGACGGCACCTTTACAGGCAAAGCCGGGCGAGGTCGTTTCCTGCGACGCaa                                                <  1:571188/143‑1 (MQ=255)                                                                                                tcCACGACAACGCCGACTACTCGCCATGGGAGGGTTTTACCTGTCAGGGCGCGATTGTCAGAACCTTATCCCGTGGTGAAACGATTTTCTGTGACGGCACCTTTACAGGCAAAGCCGGGCGAGGTCGTTTCCTGCGACGCaaa                                               <  1:513043/143‑1 (MQ=255)                                                                                                tcCACCGCACCGGCGACTCCTCGCCATGGGAGGGTTTTACCTGGCAGGGCGCGATTGTCAGAACCTCATCCCGTGGTGAAACGATTTTCTGTGACGGCACCTTTACAGGCAAAGCCGGGCGAGGTCGTTTCCTGCGACGCaaa                                               <  2:555931/143‑1 (MQ=255)                                                                                                     gACAACGCCGACTACTCGCCATGGGAGGGTTTTACCTGTCAGGGCGCGATTGTCAGAACCTTATCCCGTGGTGAAACGATTTTCTGTGACGGCACCTTTACAGGCGAAGCCGGGCGAGGTCGTTTCCTGCGACGCAGACCGtt                                          >  1:208122/1‑143 (MQ=255)                                                                                                     gACAACGCCGACTACTCGCCATGGGAGGGTTTTACCTGTCAGGGCGCGATTGTCAGAACCTTATCCCGTGGTGAAACGATTTTCTGTGACGGCACCTTTACAGGCAAAGCCGGGCGAGGTCGTTTCCTGCGACGCAAACCGtt                                          >  1:46922/1‑143 (MQ=255)                                                                                                        aaCGCCGACTACTCGCCATGGGAGGGTTTTACCTGTCAGGGCGCGATTGTCAGAACCATATCCCGTGGTGAAACGATTTTCTGTGACGGCACCTTTACAGGCAAAGCCGGGCGAGGTCGTTTCCGGCGACGCAAACCGTTTgg                                       >  2:562962/1‑142 (MQ=255)                                                                                                            ccGACTACTCGCCATGGGAGGGTTTTACCTGTCAGGGCGCGATTGTCAGAACCTTATCCCGTGGTGAAACGATTTTCTGTGACGGCACCTTTACAGGCAAAGCCGGGCGAGGTCGTTTCCTGCGACGCAAACCGTTTGtccct                                   >  1:657570/1‑143 (MQ=255)                                                                                                               actactCGCCATGGGAGGGTTTTACCTGTCAGGGCGCGATTGTCAGAACCTCATCCCGTGGTGAAACGATTTTCTGTGACGGCACCTTTACAGGCAAAGCCGGGCGAGGTCGTTTCCTGCGACGCAAACCGTTTGtccctccc                                <  1:561999/143‑1 (MQ=255)                                                                                                                    tCGCCATGGGAGGGTTTTACCTGTCAGGGCGCGATTGTCAGAACCTTATCCCGTGGTGAAACGATTTTCTGTGACGGCACCTTTACAGGCAAAGCCGGGCGAGGTCGTTTCCTGCGACGCAAACCGTTTGTCCCTCCCGTGct                           <  1:441127/143‑1 (MQ=255)                                                                                                                       ccATGGGAGGGTTTTACCTGTCAGGGCGCGATTGTCAGAACCTTATCCCGTGGGGAAACGATTTTCTGTGACGGCACCTTTACAGGCAAAGCCGGGCGAGGTCGTTTCCTGCGACGCAAACCGTTTGTCCCTCCCGTGCTCTa                        <  2:169844/143‑1 (MQ=255)                                                                                                                           gggAGGGTTTTACCTGTCAGGGCGCGATTGTCAGAACCTTATCCCGTGGTGAAACGATTTTCTGTGACGGCACCTTTACAGGCAAAGCCGGGCGAGGGCGTTTCCTGCGACGCAAACCGGTTGTCCCTCCCGTGCTCTAGccc                    >  1:73355/1‑142 (MQ=255)                                                                                                                                     tcccTGTCAGGGCGCGGTTGTCAGAACCTTATCCCGTGGTTAAACGATTTTCTGTGACGTCACCTTTACAGGCAAAGCCGGGCGAGGTCGTTTCCTGCGACGCAAACCGTTTGTCCCTCCCGTGCTCTAACCACTGCCAGGGa          <  2:11067/141‑1 (MQ=255)                                                                                                                                     tACCTGTCAGGGCGCGATTGTCAGAACCTTATCCCGTGGTGAAACGATTTTCTGTGACGGCACCTTTACAGGCAAAGCCGGGCGAGGTCGTTTCCTGCGACGCAAACCGTTTGTCCCTCCCGTGCTCTAACCACTGCCAGGGa          <  1:524097/143‑1 (MQ=255)                                                                                                                                           tCAGGGCGCGATTGCCAGAACCTTATCCCGTGGTGAAACGATTTTCTGTGACGGCACCTTTACAGGCAAAGCCGGGCGAGGTCGTTTCCTGCGACGCAAACCGTTTGTCCCTCCCGTGCTCTAACCACTGCCAGGGATCtata    <  1:498633/143‑1 (MQ=255)                                                                                                                                             aGGCCGCCATTGTCAGAACCTTCTCCCCTGGTGAAACGATTCTCTGTGACGGCACCTTTACAGGCAAAGCCGGGCGAGGTCGTTTCCTGCGACGCAAACCGTTTGTCCCTCCCGTGCTCTAACCACTGCCAGGGATCTATaca  <  1:392587/143‑1 (MQ=255)                                                                                                                                              |                                                                                                                                              CCTGTGGCCGCAAAAAGGATTATTAGCGCCCGGTTCCGACGGCGACGTGGTGATTATCGACCCACGTCAGAGCCAACAAATTCAGCATCGCCATCTCCACGACAACGCCGACTACTCGCCATGGGAGGGTTTTACCTGTCAGGGCGCGATTGTCAGAACCTTATCCCGTGGTGAAACGATTTTCTGTGACGGCACCTTTACAGGCAAAGCCGGGCGAGGTCGTTTCCTGCGACGCAAACCGTTTGTCCCTCCCGTGCTCTAACCACTGCCAGGGATCTATACA  >  NC_000913/3011152‑3011434

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.