Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 257,908 Δ776 bp [crl] [crl]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 257908–258673 258683 11–776 57 [0] [1] 58 [crl] [crl]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 2579070 (0.000)52 (0.760) 46/266 0.5 99.1% intergenic (+8/‑769) crl/crl pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers/pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers
?NC_000913 258684 = 1 (0.010)pseudogene (9/331 nt) crl pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers

TGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGC  >  NC_000913/257766‑258049
                                                                                                                                             |                                                                                                                                              
tgtTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAa                                                                                                                                               >  2:747609‑M1/1‑142 (MQ=255)
  ttAAAAATTTGCTAAATTTTGCCCATGTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTCACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagt                                                                                                                                             <  1:336462‑M1/143‑4 (MQ=255)
  ttAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGACTGATCAAAACATTTACCGCACTAGCCCCGTCTATTCGTGAAGGTAagt                                                                                                                                             >  2:314437‑M1/1‑140 (MQ=255)
  ttAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTAACGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATGCGTGAAGGTAagt                                                                                                                                             >  1:647753‑M1/1‑140 (MQ=255)
  ttAAAAATTTGCTAAATTTGGGAAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagt                                                                                                                                             <  1:754763‑M1/143‑4 (MQ=255)
    aaaaaTTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAACAAATTTACCGCACTAGGCACGTATATTCGCGAAGGTAagtgc                                                                                                                                           >  2:484082‑M1/1‑138 (MQ=255)
            gCTAAAGTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataa                                                                                                                                   <  1:509061‑M1/143‑14 (MQ=255)
             cTAAATTTTGCTCCTTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataat                                                                                                                                  <  1:1236742‑M1/143‑15 (MQ=255)
              tAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatc                                                                                                                                 >  1:417262‑M1/1‑128 (MQ=255)
              tAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGGAagtgcaaagataatc                                                                                                                                 >  2:173132‑M1/1‑128 (MQ=255)
              tAAACTTTGCCAACTTGGTAAAACAGTGGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatc                                                                                                                                 <  1:580284‑M1/143‑16 (MQ=255)
               aaaTTTGGCCAATTTGGTAAAACAGTTGCATCACGACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcg                                                                                                                                <  1:994643‑M1/143‑17 (MQ=255)
                aaTTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaacgataatcga                                                                                                                               >  1:347563‑M1/1‑126 (MQ=255)
                           tttGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcga                                                                                                                    >  1:1090785‑M1/1‑115 (MQ=255)
                                 aaaaCAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtct                                                                                                              <  1:319985‑M1/143‑35 (MQ=255)
                                        ttGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgta                                                                                                       >  1:321132‑M1/1‑102 (MQ=255)
                                             tCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgt                                                                                                  >  1:829772‑M1/1‑97 (MQ=255)
                                                 aacaGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaac                                                                                              >  1:1063347‑M1/1‑93 (MQ=255)
                                                 aacaGGAGATAGCAATGACGTTACCGAGAGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGAATATTCGTGAAGGTAagtgcaaagataatcgattcttattcgattgtctggctgtatgcgccaac                                                                                              >  2:101066‑M1/1‑93 (MQ=255)
                                                  acaGGAGATAGCAATGCCGTTACCGGGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacg                                                                                             <  2:234300‑M1/143‑52 (MQ=255)
                                                   cgggagACAGCAATGACGTTACCGAGTGGACACCCGAAGAGTAGATTGAGCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgt                                                                                            <  2:1194535‑M1/141‑53 (MQ=255)
                                                       agaTAGAAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAAGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaa                                                                                        <  2:334092‑M1/143‑57 (MQ=255)
                                                            gCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaccctgaaaccggc                                                                                   >  1:174364‑M1/1‑82 (MQ=255)
                                                              aaggacgTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcac                                                                                 <  1:581456‑M1/140‑64 (MQ=255)
                                                              aaTGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTCTATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaccgtgaaaccggcac                                                                                 >  1:597734‑M1/1‑80 (MQ=255)
                                                               aTGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAACTTTACAGCACTAGGCCCGAATATTGGTGAAGGTAagtgcaaagataatcgattctttttcgattgtcaggctgtatgcgtcaacgtgaacccgacact                                                                                >  2:737159‑M1/1‑79 (MQ=255)
                                                               aTGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATGCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggccgtatgcgtcaacgtgaaaacggcacc                                                                                >  1:309344‑M1/1‑79 (MQ=255)
                                                                    gTTACCGAGTGGACACCCGAAGAGCAGAATGATCAAAAAAGTTACTGCACTAGGCGCGTATATTCGTGAAGGGAagtgcaaagataatcgattctgtttcgagtgtctggctgtatgcgtcaacgtgaaaccggcaccggaag                                                                           >  2:93281‑M1/1‑74 (MQ=255)
                                                                     ttACCGGCTGGACACACGAAGAGCAGATTGATCAAAAAATTTACCGCACGAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgagtctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagt                                                                          <  1:1266107‑M1/143‑71 (MQ=255)
                                                                       aCCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggccccggaagtgc                                                                        >  2:128664‑M1/1‑71 (MQ=255)
                                                                        cctagtgGACACCCGAAGAGCAGATTGATCAAAAAAGTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcg                                                                       <  2:1172493‑M1/140‑74 (MQ=255)
                                                                         cGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTAGATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgt                                                                      >  2:1161615‑M1/1‑69 (MQ=255)
                                                                         cGAGTGGACACCCGAAGAGCAGATTGATCAAAAAAGTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgt                                                                      <  2:159705‑M1/143‑75 (MQ=255)
                                                                         cGAGAGGCCACCCGAAGAGCAGATGGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgt                                                                      <  1:972967‑M1/143‑75 (MQ=255)
                                                                           aGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtga                                                                    >  1:1042661‑M1/1‑67 (MQ=255)
                                                                                    ccGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctgggg                                                           >  1:122569‑M1/1‑58 (MQ=255)
                                                                                       aaGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGGATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctg                                                        <  2:28416‑M1/143‑89 (MQ=255)
                                                                                         gagCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattcttgttggattgtctggctgtatgcgtcaacgtgataccggcaccggaagtgcgtgaattctggggctggt                                                      <  2:417262‑M1/143‑91 (MQ=255)
                                                                                          agCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgggtgaattctggggcgggtg                                                     >  1:965491‑M1/1‑52 (MQ=255)
                                                                                            ccgatTGATCAAGAAAGTTACCACACTAGTCCCTTATATTCGTGAAGGTAagtgctaagacaatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtgga                                                   <  2:216150‑M1/141‑94 (MQ=255)
                                                                                              gATTGATCAAAAAATTTACCCCACGAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatg                                                 <  1:890113‑M1/143‑96 (MQ=255)
                                                                                                ttGATCAAAAAATTTACCGCACTAGGTCCGTATATTCGTGAAGGTAagtgcaaggataatctattctttttcgattgtttggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatgga                                               <  2:336972‑M1/143‑98 (MQ=255)
                                                                                                   aTCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagcgcgtgaattctggggctggtggatggagca                                            >  2:377443‑M1/1‑43 (MQ=255)
                                                                                                       aaaaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaa                                        <  2:682816‑M1/143‑105 (MQ=255)
                                                                                                        aaaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaag                                       >  2:724800‑M1/1‑38 (MQ=255)
                                                                                                           aTTTACCGCCGTAGTCGCTTATATTCGTGAAGGGAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgc                                    <  2:782750‑M1/143‑109 (MQ=255)
                                                                                                            tttACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagatactcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctgcgccgggtggatggagcgggaagcgca                                   >  2:10736‑M1/1‑34 (MQ=255)
                                                                                                            actacCGCACTCGTCCCGTCTATTCGTGCAGGTAagtgcaaagctaatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgca                                   <  1:118562‑M1/141‑110 (MQ=255)
                                                                                                                       aGGCCCGTGTATTAGTGAAGCTAagtgcaaggataatcggtgctttgtcgattggctggctgtatgcgtcaacgtggaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgtt                        <  2:59923‑M1/143‑121 (MQ=255)
                                                                                                                         gCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgtttt                      >  1:920193‑M1/1‑21 (MQ=255)
                                                                                                                          cccGTATATTCGTGAAGGTAagtgcaaagctaatcgattctttttcgagtgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgtttta                     <  2:440448‑M1/143‑124 (MQ=255)
                                                                                                                           ccctagtttcgtgaagGCAagtgcaaaggtcgtcgattccttgtccattgtcttgctgtatgcgtcaacgtgaacctggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcacgaatcccgttttac                    <  2:846180‑M1/136‑125 (MQ=255)
                                                                                                                                   tggggaaggTGagtggaatgataatcggttctgtttcgattgtctggctgtatgggtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagtt            <  2:1068175‑M1/139‑133 (MQ=255)
                                                                                                                                   tcggggaggtacgcgcaaagatagtcgattctgttgcgattgtctggctgtatgcggcaacgtgaaaccgggaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagtt            <  2:1123794‑M1/137‑133 (MQ=255)
                                                                                                                                       gatggttagtgcaaagataatcgattcgttgtcgattgtctggctgtatgcgtcgacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttacca        <  2:347563‑M1/140‑137 (MQ=255)
                                                                                                                                       gAAGGTAagtgcagagctaatcgatgctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggagtcccgttttacctacagttacca        <  2:533959‑M1/143‑137 (MQ=255)
                                                                                                                                             aagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgctttacctacagttaccagattgg  >  2:130623‑M1/1‑1 (MQ=255)
                                                                                                                                             |                                                                                                                                              
TGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGC  >  NC_000913/257766‑258049

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.