Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 257,908 Δ776 bp [crl] [crl]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 257908–258673 258683 11–776 57 [0] [1] 58 [crl] [crl]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 2579070 (0.000)52 (0.760) 46/266 0.5 99.1% intergenic (+8/‑769) crl/crl pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers/pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers
?NC_000913 258684 = 1 (0.010)pseudogene (9/331 nt) crl pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers

GTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTTGG  >  NC_000913/258542‑258825
                                                                                                                                              |                                                                                                                                             
tgttaaaaatttgctaaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaa                                                                                                                                               >  2:747609‑M2/143‑143 (MQ=255)
  ttaaaaatttgctaaattttgcccatgtggtaaaacagttgcatcacaacaggagatagcaatgacgtcaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGt                                                                                                                                             <  1:336462‑M2/3‑1 (MQ=255)
  ttaaaaatttgctaaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagactgatcaaaacatttaccgcactagccccgtctattcgtgaaggtaAGt                                                                                                                                             >  2:314437‑M2/141‑143 (MQ=255)
  ttaaaaatttgctaaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaacgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatatgcgtgaaggtaAGt                                                                                                                                             >  1:647753‑M2/141‑143 (MQ=255)
  ttaaaaatttgctaaatttgggaaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGt                                                                                                                                             <  1:754763‑M2/3‑1 (MQ=255)
    aaaaatttgctaaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaacaaatttaccgcactaggcacgtatattcgcgaaggtaAGTGc                                                                                                                                           >  2:484082‑M2/139‑143 (MQ=255)
            gctaaagtttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATaa                                                                                                                                   <  1:509061‑M2/13‑1 (MQ=255)
             ctaaattttgctcctttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAAt                                                                                                                                  <  1:1236742‑M2/14‑1 (MQ=255)
              taaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATc                                                                                                                                 >  1:417262‑M2/129‑143 (MQ=255)
              taaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaagggaAGTGCAAAGATAATc                                                                                                                                 >  2:173132‑M2/129‑143 (MQ=255)
              taaactttgccaacttggtaaaacagtggcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATc                                                                                                                                 <  1:580284‑M2/15‑1 (MQ=255)
               aaatttggccaatttggtaaaacagttgcatcacgacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCg                                                                                                                                <  1:994643‑M2/16‑1 (MQ=255)
                aattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAACGATAATCGa                                                                                                                               >  1:347563‑M2/127‑143 (MQ=255)
                           tttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGa                                                                                                                    >  1:1090785‑M2/116‑143 (MQ=255)
                                 aaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCt                                                                                                              <  1:319985‑M2/34‑1 (MQ=255)
                                        ttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTa                                                                                                       >  1:321132‑M2/103‑143 (MQ=255)
                                             tcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGt                                                                                                  >  1:829772‑M2/98‑143 (MQ=255)
                                                 aacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAAc                                                                                              >  1:1063347‑M2/94‑143 (MQ=255)
                                                 aacaggagatagcaatgacgttaccgagaggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgaatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTATTCGATTGTCTGGCTGTATGCGCCAAc                                                                                              >  2:101066‑M2/94‑143 (MQ=255)
                                                  acaggagatagcaatgccgttaccgggtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACg                                                                                             <  2:234300‑M2/51‑1 (MQ=255)
                                                   cgggagacagcaatgacgttaccgagtggacacccgaagagtagattgagcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGt                                                                                            <  2:1194535‑M2/52‑1 (MQ=255)
                                                       agatagaaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaagcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGaaa                                                                                        <  2:334092‑M2/56‑1 (MQ=255)
                                                            gcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCACCCTGAAACCGGc                                                                                   >  1:174364‑M2/83‑143 (MQ=255)
                                                              aatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtctattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCACCGTGAAACCGGCAc                                                                                 >  1:597734‑M2/81‑143 (MQ=255)
                                                              aaggacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCAc                                                                                 <  1:581456‑M2/63‑1 (MQ=255)
                                                               atgacgttaccgagtggacacccgaagagcagattgatcaaaaactttacagcactaggcccgaatattggtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCAGGCTGTATGCGTCAACGTGAACCCgacact                                                                                >  2:737159‑M2/80‑142 (MQ=255)
                                                               atgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatatgcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCCGTATGCGTCAACGTGAAAACGGCAcc                                                                                >  1:309344‑M2/80‑143 (MQ=255)
                                                                    gttaccgagtggacacccgaagagcagaatgatcaaaaaagttactgcactaggcgcgtatattcgtgaagggaAGTGCAAAGATAATCGATTCTGTTTCGAGTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAg                                                                           >  2:93281‑M2/75‑143 (MQ=255)
                                                                     ttaccggctggacacacgaagagcagattgatcaaaaaatttaccgcacgaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGAGTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGt                                                                          <  1:1266107‑M2/70‑1 (MQ=255)
                                                                       accgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCCCCGGAAGTGc                                                                        >  2:128664‑M2/72‑143 (MQ=255)
                                                                        cctagtggacacccgaagagcagattgatcaaaaaagttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCg                                                                       <  2:1172493‑M2/73‑1 (MQ=255)
                                                                         cgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtagattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGt                                                                      >  2:1161615‑M2/70‑143 (MQ=255)
                                                                         cgagtggacacccgaagagcagattgatcaaaaaagttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGt                                                                      <  2:159705‑M2/74‑1 (MQ=255)
                                                                         cgagaggccacccgaagagcagatggatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGt                                                                      <  1:972967‑M2/74‑1 (MQ=255)
                                                                           agtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGa                                                                    >  1:1042661‑M2/68‑143 (MQ=255)
                                                                                    ccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTgggg                                                           >  1:122569‑M2/59‑143 (MQ=255)
                                                                                       aagagcagattgatcaaaaaatttaccgcactaggcccggatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCtg                                                        <  2:28416‑M2/88‑1 (MQ=255)
                                                                                         gagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTGTTGGATTGTCTGGCTGTATGCGTCAACGTGATACCGGCACCGGAAGTGCGTGAATTCTGGGGCtggt                                                      <  2:417262‑M2/90‑1 (MQ=255)
                                                                                          agcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGGGTGAATTCTGGGGCgggtg                                                     >  1:965491‑M2/53‑143 (MQ=255)
                                                                                            ccgattgatcaagaaagttaccacactagtcccttatattcgtgaaggtaAGTGCTAAGACAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGtgga                                                   <  2:216150‑M2/93‑1 (MQ=255)
                                                                                              gattgatcaaaaaatttaccccacgaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGtggatg                                                 <  1:890113‑M2/95‑1 (MQ=255)
                                                                                                ttgatcaaaaaatttaccgcactaggtccgtatattcgtgaaggtaAGTGCAAGGATAATCTATTCTTTTTCGATTGTTTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGtggatgga                                               <  2:336972‑M2/97‑1 (MQ=255)
                                                                                                   atcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGCGCGTGAATTCTGGGGCTGGTGGATGGAgca                                            >  2:377443‑M2/44‑142 (MQ=255)
                                                                                                       aaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGaa                                        <  2:682816‑M2/104‑1 (MQ=255)
                                                                                                        aaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAg                                       >  2:724800‑M2/39‑143 (MQ=255)
                                                                                                           atttaccgccgtagtcgcttatattcgtgaagggaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAgcgc                                    <  2:782750‑M2/108‑1 (MQ=255)
                                                                                                            tttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATACTCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGCGCCGGGTGGATGGAGCGGGAAGCGCa                                   >  2:10736‑M2/35‑143 (MQ=255)
                                                                                                            actaccgcactcgtcccgtctattcgtgcaggtaAGTGCAAAGCTAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCa                                   <  1:118562‑M2/109‑1 (MQ=255)
                                                                                                                       aggcccgtgtattagtgaagctaAGTGCAAGGATAATCGGTGCTTTGTCGATTGGCTGGCTGTATGCGTCAACGTGGAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGtt                        <  2:59923‑M2/120‑1 (MQ=255)
                                                                                                                         gcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGtttt                      >  1:920193‑M2/22‑143 (MQ=255)
                                                                                                                          cccgtatattcgtgaaggtaAGTGCAAAGCTAATCGATTCTTTTTCGAGTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTa                     <  2:440448‑M2/123‑1 (MQ=255)
                                                                                                                           ccctagtttcgtgaaggcaAGTGCAAAGGTCGTCGATTCCTTGTCCATTGTCTTGCTGTATGCGTCAACGTGAACCTGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCACGAATCCCGTTTTAc                    <  2:846180‑M2/124‑1 (MQ=255)
                                                                                                                                   tggggaaggtgAGTGGAATGATAATCGGTTCTGTTTCGATTGTCTGGCTGTATGGGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGtt            <  2:1068175‑M2/132‑1 (MQ=255)
                                                                                                                                   tcggggaggtaCGCGCAAAGATAGTCGATTCTGTTGCGATTGTCTGGCTGTATGCGGCAACGTGAAACCGGGACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGtt            <  2:1123794‑M2/132‑1 (MQ=255)
                                                                                                                                     cTGAAGGTAAGTGCAAAGATAATCGATTCTTATTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTAc          <  1:354669/143‑1 (MQ=255)
                                                                                                                                       gatggttAGTGCAAAGATAATCGATTCGTTGTCGATTGTCTGGCTGTATGCGTCGACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCa        <  2:347563‑M2/136‑1 (MQ=255)
                                                                                                                                       gaaggtaAGTGCAGAGCTAATCGATGCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAGTCCCGTTTTACCTACAGTTACCa        <  2:533959‑M2/136‑1 (MQ=255)
                                                                                                                                             aAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGCTTTACCTACAGTTACCAGATTgg  >  2:130623‑M2/2‑143 (MQ=255)
                                                                                                                                              |                                                                                                                                             
GTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTTGG  >  NC_000913/258542‑258825

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.