New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	193444 =	32 (0.830)	3 (0.080)	3/264	5.4	9.1%	intergenic (+15/‑77)	frr/dxr	ribosome recycling factor/1‑deoxy‑D‑xylulose 5‑phosphate reductoisomerase
	?	NC_000913	193489 =	30 (0.840)					intergenic (+60/‑32)	frr/dxr	ribosome recycling factor/1‑deoxy‑D‑xylulose 5‑phosphate reductoisomerase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AGATAAAGAGATCAGCGAAGACGACGATCGCCGTTCTCAGGACGATGTACAGAAACTGACTGATGCTGCAATCAAGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTTCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGGCGTTTTGCTTTTTATTCTGTCTCAACTCTGGATGTTTCATGAAGCAACTCACCATTCTGGGCTCGACCGGCTCGATTGGTTGCAGCACGCTGGA  >  NC_000913/193303‑193576                                                                                                                                              |                                                                                                                                     aGATAAAGAGATCAGCGAAGACGACGATCGCCGTTCTCAGGACGATGTACAGAAACTGACTGATGCTGCAATCAAGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGCTTTCTTGAACGACaaa                                                                                                                                     >  2:14273/1‑143 (MQ=255)  gATAAAGAGATCAGCGAAGACGACGATCGCCGTTCTCAGGACGATGTACAGAAACTGACTGATGCTGCAATCAAGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTTCTTGAACGACaaaa                                                                                                                                    <  1:446947/143‑1 (MQ=255)   aTACAGAGATCAGCGGAGACGACGACCGCCGTGCTCAGGACGATGTACAGAAGCTGACTGATGCTGCAATCAAGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTTCTTGAACGACaaaaa                                                                                                                                   <  2:676361/143‑1 (MQ=255)      aaGAGATCAGCGAAGACTACGATCGCCGTTCTCAGGACCATGTACAGCAACTGACTGATGCTGCAATCAAGAAAATTGAAGCGTCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTTCTTGAACGACAAAAAcgc                                                                                                                                <  2:281861/143‑1 (MQ=255)              aGCGAAGACGCCGATCGCCGTTCTCAGGACGATGTACAGAAACTGACTGATGCTGCAATCAAGAAAATAGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATACAGGACGGATTTCTTGACCGACAGAAGCGCCGCTCAGt                                                                                                                        >  1:680323/1‑143 (MQ=255)                                       aGGACGATGTACAGAAACTGACTGATGCTGCAATCAAGAAAATTGCAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGCTTTCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTggcggc                                                                                               >  2:504115/1‑143 (MQ=255)                                       aGGACGATGTACAGAAACTGACTGATGCTGCAATCAAGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTTCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTggcggc                                                                                               >  1:571516/1‑143 (MQ=255)                                          aCGATGTACAGAAACTGACTGATGCTGCAATCAAGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTTCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGGCGtt                                                                                            <  1:408059/143‑1 (MQ=255)                                          aCGATGTACAGAAACTGACTGATGCTGCAATCAAGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTTCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGGCGtt                                                                                            <  1:408551/143‑1 (MQ=255)                                             aTGTACAGAAACTGACTGATGCTGCAATCAAGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTTCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGGCGTGTTg                                                                                         >  1:166961/1‑143 (MQ=255)                                                 aCAGAAACTGACTGATGCTGCAATCAAGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTTCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGGCGTTTGGCttt                                                                                     >  1:243595/1‑143 (MQ=255)                                                   aGAAACTGACTGATGCTGCAATCAAGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTGTGATTTCTTGAACGACAAAAACGCCGCTCAGGAGATCCTTGCGGATCGGCTGGCGGCGTTTTGCttttt                                                                                   >  1:522454/1‑143 (MQ=255)                                                            ctgaTGCTGCAATCAAGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTTCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGGCGTTTTGCTTTTTATTCTGtct                                                                          <  1:412373/143‑1 (MQ=255)                                                              gaTGCCGCAATCAAGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTTCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGCTCGGCTGGCGGCCTTCTGCTCTTCCTTCTGTCTCa                                                                        >  1:151678/1‑143 (MQ=255)                                                                 gctgcAATCAAGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTTCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGGCGTTTTGCTTTTTATTCTGTCTCAAct                                                                     <  1:216436/143‑1 (MQ=255)                                                                   tgcAATCAAGAAAATTGAAGCGGCGCTGACAGACAAAGAAGCAGAACTGATGCAGTTCTGATTTCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGGCGTTTTGCTTTTTATTCTGTGTGAActct                                                                   >  1:688775/1‑143 (MQ=255)                                                                    gcAATCAAGAAAATTGAGGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTTCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGGCGTTTTGCTTTTTATTCTGTCTCAACTCTg                                                                  <  1:252827/143‑1 (MQ=255)                                                                          aaGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTTCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGGCGTTTTGCTTTTTATTCTGTCTCAACTCTGGATGtt                                                            >  1:532164/1‑143 (MQ=255)                                                                             aaaaTTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGAAGCAGTTCTGATTTCTTGAACGACAAAAGCGCCACTCAGTAGATCCTTGCGGATCGGCAGGCGGCGATTTGCATTTTATTCTGTCCCAACTCTGGATGTTGCa                                                         >  1:334253/1‑143 (MQ=255)                                                                                aTTGAAGCGGCGCTAGTAGACACAGAAGCAGCACTGATGCAGTTCTGATTTCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGGCGTTTTGCTTTTTATTCTGTCTCAACTCTGGATGTTTCATGa                                                      <  2:238571/143‑1 (MQ=255)                                                                                 ttGAAGCGGCGCTGGCAGACAAAGAAGAAGAACTGATGCAGTTCTGATTTCTTGAACGACAAAAACGCAGCTCAGTAGATCATTGCGGAGCGGCTGGCGGCGTTTTGCTTTTTATTCTGGCTAAACACTGGATGTTTAAGGaa                                                     >  2:110628/1‑143 (MQ=255)                                                                                         gcgcTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTTCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGGCGTTTTGCTTTTTATTCTGTCTCAACTCTGGATGTTTCATGAAGCAACTCa                                             >  1:37519/1‑143 (MQ=255)                                                                                              ggCAGACGAAGAAGCAGAACTGATGCAGTTCTGATTTCTTGAACGACACAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGGCGTTTTGCTTTTTATTCTGTCTCAACTCAGGATGTTTCATGAAGCAACTCACCAtt                                        <  2:685177/143‑1 (MQ=255)                                                                                                    cAAAGAAGCAGAACTGATGCAGTTCTGATTTCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGGCGTTTTGCTTTTTATTCTGTCTCAACTCTGGATGTTTCATGAAGCAACTCACCATTCTGGGc                                  <  2:571516/143‑1 (MQ=255)                                                                                                        gaagCAGAACTGATGCAGTTCTGATTTCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGGCGTTTTGCTTTTTATTCTGTCTCAACTCTGGATGTTTCATGAAGCAACTCACCATTCTGGGCTCGa                              <  1:654284/143‑1 (MQ=255)                                                                                                         aggCAGAACTGATGCAGTTCTGATTTCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGGCGTTTTGCTTTTTATTCTGTCTCAACTCTGGATGTTTCATGAAGCAACTCACCATTCTGGGCTCGAc                             <  2:36510/141‑1 (MQ=255)                                                                                                           gCAGAACTGATGCAGTTCTGATTTCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGGCGTTTTGCTTTTTATTCTGTCTCAACTGTGGATGTTTCATGAAGCAACTCACGATTCTGGGGGCGAccc                           >  2:327288/1‑142 (MQ=255)                                                                                                           gCAGAACTGATGCAGTTCTGATTTCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGGCGTTTTGCTTTTTATTCTGTCTCAACTCTGGATGTTTCATGAAGCAACTCACCATTCTGGGCTCGACCg                           >  1:646472/1‑143 (MQ=255)                                                                                                           gCAGAACTGATGCAGTTCTGATTTCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGGCGTTTTGCTTTTTATTCTGTCTCAACTCTGGATGTTTCATGAAGCAACTCACCATTCTGGGCTCGACCg                           >  1:490595/1‑143 (MQ=255)                                                                                                              aacctattGCTGTTCTGATTTCTTGACCGACAAAACCGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGGCGTTTTGCTTTTTATTCTGTCTCAACTCTGGATGTTTCATGAAGCAACTCACCATTCTGGGCTCGACCGGCt                        <  2:410489/136‑1 (MQ=255)                                                                                                                      gCAGTTCTGATTTCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGGCGTTTTGCTTTTTATTCTGTCTCAACTCTGGATGTTTCATGAAGCAACTCACCATTCTGGGCTCGACCGGCTCGATTGGt                <  2:366016/143‑1 (MQ=255)                                                                                                                                    ttGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGGCGTTTTGCTTTTTATTCTGTCTCAACTCTGGATGTCTCATCAAGCAACTCACCATTCTGGGCTCGACCGGCTCGATTGGCTGCCGCGCGCTGGa  >  2:241758/1‑143 (MQ=255)                                                                                                                                              |                                                                                                                                     AGATAAAGAGATCAGCGAAGACGACGATCGCCGTTCTCAGGACGATGTACAGAAACTGACTGATGCTGCAATCAAGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTTCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGGCGTTTTGCTTTTTATTCTGTCTCAACTCTGGATGTTTCATGAAGCAACTCACCATTCTGGGCTCGACCGGCTCGATTGGTTGCAGCACGCTGGA  >  NC_000913/193303‑193576

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.