New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 193444 =32 (0.830)3 (0.080) 3/264 5.4 9.1% intergenic (+15/‑77) frr/dxr ribosome recycling factor/1‑deoxy‑D‑xylulose 5‑phosphate reductoisomerase
?NC_000913 193489 = 30 (0.840)intergenic (+60/‑32) frr/dxr ribosome recycling factor/1‑deoxy‑D‑xylulose 5‑phosphate reductoisomerase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AGATAAAGAGATCAGCGAAGACGACGATCGCCGTTCTCAGGACGATGTACAGAAACTGACTGATGCTGCAATCAAGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTTCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGGCGTTTTGCTTTTTATTCTGTCTCAACTCTGGATGTTTCATGAAGCAACTCACCATTCTGGGCTCGACCGGCTCGATTGGTTGCAGCACGCTGGA  >  NC_000913/193303‑193576
                                                                                                                                             |                                                                                                                                    
aGATAAAGAGATCAGCGAAGACGACGATCGCCGTTCTCAGGACGATGTACAGAAACTGACTGATGCTGCAATCAAGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGCTTTCTTGAACGACaaa                                                                                                                                     >  2:14273/1‑143 (MQ=255)
 gATAAAGAGATCAGCGAAGACGACGATCGCCGTTCTCAGGACGATGTACAGAAACTGACTGATGCTGCAATCAAGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTTCTTGAACGACaaaa                                                                                                                                    <  1:446947/143‑1 (MQ=255)
  aTACAGAGATCAGCGGAGACGACGACCGCCGTGCTCAGGACGATGTACAGAAGCTGACTGATGCTGCAATCAAGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTTCTTGAACGACaaaaa                                                                                                                                   <  2:676361/143‑1 (MQ=255)
     aaGAGATCAGCGAAGACTACGATCGCCGTTCTCAGGACCATGTACAGCAACTGACTGATGCTGCAATCAAGAAAATTGAAGCGTCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTTCTTGAACGACAAAAAcgc                                                                                                                                <  2:281861/143‑1 (MQ=255)
             aGCGAAGACGCCGATCGCCGTTCTCAGGACGATGTACAGAAACTGACTGATGCTGCAATCAAGAAAATAGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATACAGGACGGATTTCTTGACCGACAGAAGCGCCGCTCAGt                                                                                                                        >  1:680323/1‑143 (MQ=255)
                                      aGGACGATGTACAGAAACTGACTGATGCTGCAATCAAGAAAATTGCAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGCTTTCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTggcggc                                                                                               >  2:504115/1‑143 (MQ=255)
                                      aGGACGATGTACAGAAACTGACTGATGCTGCAATCAAGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTTCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTggcggc                                                                                               >  1:571516/1‑143 (MQ=255)
                                         aCGATGTACAGAAACTGACTGATGCTGCAATCAAGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTTCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGGCGtt                                                                                            <  1:408059/143‑1 (MQ=255)
                                         aCGATGTACAGAAACTGACTGATGCTGCAATCAAGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTTCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGGCGtt                                                                                            <  1:408551/143‑1 (MQ=255)
                                            aTGTACAGAAACTGACTGATGCTGCAATCAAGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTTCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGGCGTGTTg                                                                                         >  1:166961/1‑143 (MQ=255)
                                                aCAGAAACTGACTGATGCTGCAATCAAGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTTCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGGCGTTTGGCttt                                                                                     >  1:243595/1‑143 (MQ=255)
                                                  aGAAACTGACTGATGCTGCAATCAAGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTGTGATTTCTTGAACGACAAAAACGCCGCTCAGGAGATCCTTGCGGATCGGCTGGCGGCGTTTTGCttttt                                                                                   >  1:522454/1‑143 (MQ=255)
                                                           ctgaTGCTGCAATCAAGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTTCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGGCGTTTTGCTTTTTATTCTGtct                                                                          <  1:412373/143‑1 (MQ=255)
                                                             gaTGCCGCAATCAAGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTTCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGCTCGGCTGGCGGCCTTCTGCTCTTCCTTCTGTCTCa                                                                        >  1:151678/1‑143 (MQ=255)
                                                                gctgcAATCAAGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTTCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGGCGTTTTGCTTTTTATTCTGTCTCAAct                                                                     <  1:216436/143‑1 (MQ=255)
                                                                  tgcAATCAAGAAAATTGAAGCGGCGCTGACAGACAAAGAAGCAGAACTGATGCAGTTCTGATTTCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGGCGTTTTGCTTTTTATTCTGTGTGAActct                                                                   >  1:688775/1‑143 (MQ=255)
                                                                   gcAATCAAGAAAATTGAGGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTTCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGGCGTTTTGCTTTTTATTCTGTCTCAACTCTg                                                                  <  1:252827/143‑1 (MQ=255)
                                                                         aaGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTTCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGGCGTTTTGCTTTTTATTCTGTCTCAACTCTGGATGtt                                                            >  1:532164/1‑143 (MQ=255)
                                                                            aaaaTTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGAAGCAGTTCTGATTTCTTGAACGACAAAAGCGCCACTCAGTAGATCCTTGCGGATCGGCAGGCGGCGATTTGCATTTTATTCTGTCCCAACTCTGGATGTTGCa                                                         >  1:334253/1‑143 (MQ=255)
                                                                               aTTGAAGCGGCGCTAGTAGACACAGAAGCAGCACTGATGCAGTTCTGATTTCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGGCGTTTTGCTTTTTATTCTGTCTCAACTCTGGATGTTTCATGa                                                      <  2:238571/143‑1 (MQ=255)
                                                                                ttGAAGCGGCGCTGGCAGACAAAGAAGAAGAACTGATGCAGTTCTGATTTCTTGAACGACAAAAACGCAGCTCAGTAGATCATTGCGGAGCGGCTGGCGGCGTTTTGCTTTTTATTCTGGCTAAACACTGGATGTTTAAGGaa                                                     >  2:110628/1‑143 (MQ=255)
                                                                                        gcgcTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTTCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGGCGTTTTGCTTTTTATTCTGTCTCAACTCTGGATGTTTCATGAAGCAACTCa                                             >  1:37519/1‑143 (MQ=255)
                                                                                             ggCAGACGAAGAAGCAGAACTGATGCAGTTCTGATTTCTTGAACGACACAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGGCGTTTTGCTTTTTATTCTGTCTCAACTCAGGATGTTTCATGAAGCAACTCACCAtt                                        <  2:685177/143‑1 (MQ=255)
                                                                                                   cAAAGAAGCAGAACTGATGCAGTTCTGATTTCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGGCGTTTTGCTTTTTATTCTGTCTCAACTCTGGATGTTTCATGAAGCAACTCACCATTCTGGGc                                  <  2:571516/143‑1 (MQ=255)
                                                                                                       gaagCAGAACTGATGCAGTTCTGATTTCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGGCGTTTTGCTTTTTATTCTGTCTCAACTCTGGATGTTTCATGAAGCAACTCACCATTCTGGGCTCGa                              <  1:654284/143‑1 (MQ=255)
                                                                                                        aggCAGAACTGATGCAGTTCTGATTTCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGGCGTTTTGCTTTTTATTCTGTCTCAACTCTGGATGTTTCATGAAGCAACTCACCATTCTGGGCTCGAc                             <  2:36510/141‑1 (MQ=255)
                                                                                                          gCAGAACTGATGCAGTTCTGATTTCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGGCGTTTTGCTTTTTATTCTGTCTCAACTGTGGATGTTTCATGAAGCAACTCACGATTCTGGGGGCGAccc                           >  2:327288/1‑142 (MQ=255)
                                                                                                          gCAGAACTGATGCAGTTCTGATTTCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGGCGTTTTGCTTTTTATTCTGTCTCAACTCTGGATGTTTCATGAAGCAACTCACCATTCTGGGCTCGACCg                           >  1:646472/1‑143 (MQ=255)
                                                                                                          gCAGAACTGATGCAGTTCTGATTTCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGGCGTTTTGCTTTTTATTCTGTCTCAACTCTGGATGTTTCATGAAGCAACTCACCATTCTGGGCTCGACCg                           >  1:490595/1‑143 (MQ=255)
                                                                                                             aacctattGCTGTTCTGATTTCTTGACCGACAAAACCGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGGCGTTTTGCTTTTTATTCTGTCTCAACTCTGGATGTTTCATGAAGCAACTCACCATTCTGGGCTCGACCGGCt                        <  2:410489/136‑1 (MQ=255)
                                                                                                                     gCAGTTCTGATTTCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGGCGTTTTGCTTTTTATTCTGTCTCAACTCTGGATGTTTCATGAAGCAACTCACCATTCTGGGCTCGACCGGCTCGATTGGt                <  2:366016/143‑1 (MQ=255)
                                                                                                                                   ttGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGGCGTTTTGCTTTTTATTCTGTCTCAACTCTGGATGTCTCATCAAGCAACTCACCATTCTGGGCTCGACCGGCTCGATTGGCTGCCGCGCGCTGGa  >  2:241758/1‑143 (MQ=255)
                                                                                                                                             |                                                                                                                                    
AGATAAAGAGATCAGCGAAGACGACGATCGCCGTTCTCAGGACGATGTACAGAAACTGACTGATGCTGCAATCAAGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTTCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGGCGTTTTGCTTTTTATTCTGTCTCAACTCTGGATGTTTCATGAAGCAACTCACCATTCTGGGCTCGACCGGCTCGATTGGTTGCAGCACGCTGGA  >  NC_000913/193303‑193576

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.