New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 2371625 =37 (0.960)3 (0.080) 3/276 5.6 7.8% coding (718/1653 nt) arnT 4‑amino‑4‑deoxy‑L‑arabinose transferase
?NC_000913 2371665 = 35 (0.940)coding (758/1653 nt) arnT 4‑amino‑4‑deoxy‑L‑arabinose transferase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GACGCAAAAACGCTGGAAAGATCTCTTTATTTACGGCTGGCTGGCGGTTATCAGTTGCGTACTGACGGTTCTCCCTTGGGGACTGGCGATAGCGCAGCGGGAGCCTAACTTCTGGCACTATTTTTTCTGGGTTGAGCATATTCAACGCTTTGCACTGGATGATGCCCAACATAGAGCTCCGTTCTGGTACTACGTGCCGGTCATCATTGCCGGTAGCCTGCCGTGGCTGGGATTACTCCCCGGTGCACTGTACACAGGCTGGAAAAACCGCA  >  NC_000913/2371495‑2371766
                                                                                                                                  |                                                                                                                                             
gACGCAAAAACGCTGGAAAGATCTCTTTATTTACGGCTGGCTGGCGGTTATCAGTTGCGTACTGACGGTTCTCCCTTGGGGACTGGCGATAGCGCAGCGGGAGCCTAACTTCTGGCACTATTTTTTCTGGGTTGAGCATATTc                                                                                                                                   >  1:502972/1‑143 (MQ=255)
 aCGCAAAAACGCTGGAAAGATCTCTTTATTTACGGCTGGCTGGCGGTTATCAGTTGCGTACTGACGGTTCTCCCTTGGGGACTGGCGATAGCGCAGCGGGAGCCTAACTTCTGGCACTATTTTTTCTGGGTTGCGCGTATTCa                                                                                                                                  >  1:270193/1‑143 (MQ=255)
   gCAAAAACGCTGGAAAGATCTCTTTATTTACGGCTGGCTGGCGGTTATCAGTTGCGTACTGACGGTTCTCCCTTGGGGACTGGCGATAGCGCAGCGGGAGCCTAACTTCTGGCACTATTTTCTCGGGGTTAGGCCTACTCaaa                                                                                                                                >  2:487475/1‑142 (MQ=255)
       aaccGCTGGAAAGATCTCTTTATTTACGGCTGGCTGGCGGTTATCAGTTGCGTACTGACGGTTCTCCCTTGGGGACTGGCGATAGCGCAGCGGGAGCCTAACTTCTGGCACTATTTTTTCTGGGTTGAGCATATTCAACGCtt                                                                                                                            <  1:447632/140‑1 (MQ=255)
        aaCGCTGGAAAGATCTCTTTATTTGCGGCTGGCTGGCGGTTATCAGTTGCGTACTGACGGTTCTCCCTTGGGGACTGGCGATAGCGCAGCGGGAGCCTAACTTCTGGCACTATTTTTTCTGGGTTGAGCATATTCAACGCttt                                                                                                                           <  1:348753/143‑1 (MQ=255)
         aCGCTGGAAAGATCTCTTTATTTACGGCTGGCTGGTGGTTATCAGTTGCGTACTGACGGTTCTCCCTTGGGGACTGGCGATAGCGCAGCGGGAGCCTAACTTCTGGCACTATTTTTTCTGGGTTGAGCATATTCAACGCTTTg                                                                                                                          <  1:252179/143‑1 (MQ=255)
         aCGCTGGAAAGATCTCTTTATTTACGGCTGGCTGGCGGTTATCAGTTGCGTACTGACGGTTCTCCCTTGGGGACTGGCGATAGCGCAGCGGGAGCCTAACTTCTGGCACTATTTTTTCTGGGTTGAGCATATTCAACGCTTTg                                                                                                                          <  1:606141/143‑1 (MQ=255)
             tGGAAAGATCTCTTTATTTACGGCTGGCTGGCGGTTATCAGTTGCGTACTGACGGTTCTCCCTTGGGGACTGGCGATAGCGCAGCGGGAGCCTAACTTCTGGCACTATTTTTTCTGGGTTGAGCATATTCAACGCTTTGCACt                                                                                                                      >  1:401657/1‑143 (MQ=255)
                     tctgTTGATTTGCGGCTGGCTGCGGGTTGTCAGTTGCGTACTGACGGTTCTCCCTTGGGGACTGGCGATAGCGCAGCGGGAGCCTAACTTCTGGCACTATTTGTTCTGGGTTGAGCATATTCAACGCCTTGCACTGGatgatg                                                                                                              <  2:588880/143‑1 (MQ=255)
                                   gcggggcggcGGTTATCGGGTGCGTACTGACGGTTCGTCCTGGGGGACTTGTGATAGCGCAGGGGGAGCCTCACTGCTGGCACGATTTTTTCTGGGTTGAGCATATTCAACGCTTTGCACTGGATGATGCCCAACATAGAGCt                                                                                                <  2:516289/136‑1 (MQ=255)
                                    ctggctggCGGTTATCAGTTGCGTACTGACGGTTCTCCCTTGGGGACTGGCGATAGCGCAGCGGGAGCCTAGCGTCTGGCACTATTTATTCTGCGTTGAGCATATGCAACGCTTTGCACTGGCTGATGCCCGACATCGCGCTc                                                                                               >  2:567446/1‑143 (MQ=255)
                                       gctggcGGTTATCAGTTGCGTACTGACGGTTCTCCCTTGGGGACTGGCGATAGCGCAGCGGGAGCCTAACTTCTGGCACTATTTTTTCTGGCCTGCTCAGATTCAACGCTTTGCACTGGCTGATGCCCAACATAGAGCTCCGt                                                                                            >  1:475817/1‑143 (MQ=255)
                                           gcGGTTATGAGTTGCGTACTGACGGTTCTCCCTTGGGGACTGGCGATAGCGCAGCGGGAGCCTAACTTCTGGCACTATTTTTTCTGGGTTGAGCATATTCAACGCTTTGCACTGGATGATGCCCAACATAGAGCTCCGTTCTg                                                                                        <  2:644538/143‑1 (MQ=255)
                                           gcGGTTATCAGTTGCGTACTGACGGTTCTCCCTTGGGGACTGGCGATAGCGCAGCGGGAGCCTAACTTCTGGCACTATTTTTTCTGGGTTGAGCATATTCAACGCTTTGCACTGGATGATGCCCAACATAGAGCTCCGTTCTg                                                                                        <  2:517927/143‑1 (MQ=255)
                                           gcGGTTATCAGTTGCGTACTGACGGTTCTCCCTTGGGGACTGGCGATAGCGCAGCGGGAGCCTAACTTCTGGCACTATTTTTTCTGGGTTGAGCATATTCAACGCTTTGCACTGGATGATGCCCAACATAGAGCTCCGTTCTg                                                                                        <  2:502972/143‑1 (MQ=255)
                                               ttATCAGTTGCGTACTGACGGTTCTCCCTTGGGGACTGGCGATAGCGCATCGGGAGCCTAACTTCTGGCACTATTTTTTCTGGGTTGAGCATATTCAACGCTTTGCACTGGCTGATGCCCAACATAGAGCTCCCTTCTGGtgc                                                                                    >  1:365027/1‑141 (MQ=255)
                                               ttATCAGTTGCGTACTGACGGTGCTCCCTTGGGGACTGGCGATAGCGCAGCGGGAGCCTAACTTCTGGCACTATTTTTTCTGGGTTGAGCATATTCAACGCTTTGCACTGGATGATGCCCAACATAGAGCTCCGTTCTGGtac                                                                                    <  2:478258/143‑1 (MQ=255)
                                                caTCAGCTCCGTACTGACGGTCCTCCCTTGGGCACTGCCGATAGCGCAGCGGGAGCCTAACTTCTGGCACTATTTTTTCTGGGTTGAGCATATTCAACGCTTTGCACTGGATGATGCCCAACATAGAGCTCCGTTCTGGtact                                                                                   <  1:353207/142‑1 (MQ=255)
                                                  tCAGTTGCGTACTGACGGTTCTCCCTTGGGGACTGGCGATAGCGCAGCGGGAGCCTAACGTCTGGCACTATTTTTTCTGGGCTGAGCATATTCAACGCTTTGCACTGGATGATGCCCAACATAGAGCTCCGTTCTGGtactac                                                                                 >  2:43190/1‑143 (MQ=255)
                                                        tggTACTGACGGTTCTCCCTGGGGGACTGGCGATAGCGCAGCGGGAGCCTAACTTCTGGCACTATTTTTTCTGGGTTGAGCAGATTCAACGCTTTGCACTGGATGATGCCCAACATAGAGCTCCGTTCTGGTACTACGTGCCg                                                                           <  2:194929/141‑1 (MQ=255)
                                                        gCGTACTGACGGTTCTCCCTTGGGGACTGGCGATAGCGCAGCGGGAGCCTAACTTCTGGCACTATTTTTTCTGGGTTGAGCATATTCAACGCTTTGCACTGGATGATGCCCAACATAGAGCTCCGTTCTGGTACTACGTGCCg                                                                           <  2:474774/143‑1 (MQ=255)
                                                         ctgccTGACGGTTATGCCTGGGGGACTGGCGATAGGGTAGCGGGCGCCTAACAATTGCCAGTATGTTTTCTGGGTTGAGCATATTCATCGCTGTGCACTGGATGATGCCCAACATAGAGCTCCGTTCTGGTACTACGTGCCgg                                                                          <  2:417620/139‑1 (MQ=255)
                                                            aCTGACGGTTCTCCCTTGGGGACTGGCGATAGCGCAGCGGGAGCCTAACTTCTGGCACTATTTTTTCTGAGTTGAGCATATTCAACGCTTTGCACTGGATGATGCCCAACATAGAGCTCCGTGCTGGTACTACGTAccacgca                                                                       >  2:616266/1‑138 (MQ=255)
                                                                                   tGGCGATAGCGCAGCGGGAGCCTAACTTCTGGCACTATTTTTTCTGGGTTGAGCATATTCAACGCTTTGCACTGGATGATGCCCCACATAGAGCTCCGTTCTGGTCCTACGTGCCGGTCATCATTGCCGGTAGCCTGCCGTgg                                                >  2:474914/1‑143 (MQ=255)
                                                                                     gCGATAGCGCAGCGGGAGCCTAACTTCTGGCACTCTTTTTTCTGGGTTGAGCATATTCAACGCTTTGCACTGGATGATGCCCAACATAGAGCTCCGTTCTGGTACTACGTGCCGGTCATCATTGCCGGTGGTCTGTCGCGGCt                                              >  2:125524/1‑143 (MQ=255)
                                                                                         tAGCGCAGCGGGAGCCTATCTTCTGGCGCTATTTTTTCTGGCTTGAGCATATTCAACGCTTTGCACTGGATGATGCCCAACATAGAGCTCCGTTCTGGTACTACGTGCCGGTCATCATTGCCGGTAGCCTGCCGTGGCTGGGa                                          <  2:501783/143‑1 (MQ=255)
                                                                                                    gAGCCTAACTTCTGGCACTATTTTTTCTGGGTTGAGCATATTCAACGCTTTGCACTGGATGATGCCCAACATAGAGCTCCGTTCTGGTACTACGTGCCGGTCATCATTGCCGGTAGCCTGCCGTGGCTGGGATTACTCCCCgg                               <  1:688555/143‑1 (MQ=255)
                                                                                                        cTAACTTCTGGCACTATTTTTTCTGGGTTGAGCATATTCAACGCTTTGCACTGGATGATGCCCAACATAGAGCTCCGTTCTGGTACTACGTGCCGGTCATCATTGCCGGTAGCCTGCCGTGGCTGGGATTACTCCCCGGTGCa                           <  1:192876/143‑1 (MQ=255)
                                                                                                        cTAACTTCTGGCACTATTTTTTCTGGGTTGAGCATATTCAACGCTTTGCACTGGATGATGCCCAACATAGAGCTCCGTTCTGGTACTACGTGCCGGTCATCATTGCCGGTAGCCTGCCGTGCCTGGGAATATCCCGCCGTGCa                           >  2:408678/1‑143 (MQ=255)
                                                                                                        cTAACTTCTGGCACTATTTTTTCTGGGTTGAGCATATTCAACGCTTTGCACTGGATGATGCCCAACATAGAGCTCCGTTCTGGTACTACGTGCACGTCATCATTGCCGGTAGCCTGCCGTGGCTGGCATTACTCGCAGGTGCa                           >  2:179099/1‑143 (MQ=255)
                                                                                                            cTTCTGGCACTATTTTTTCTGGGTTGAGCATATTCAACGCTTTGCACTGGATGATGCCCAACGTGGAGCTCCGTTCTGGTACTACGTGCGGGGCATCATTGCCGGTAGCCTGCCGTGGCGGGGCGTGCTGCCCGGTCCCCTGt                       >  2:347220/1‑143 (MQ=255)
                                                                                                             ttCTGGCACTATTTTTTCTGGGTTGAGCATATTCAACGCTTTGCACTGGATGATGCCCAACATAGAGCTCCGTTCTGGTACTACGTGCCGGTCATCATTGCCGGTAGCCTGCCGTGGCTGGGATTACTCCCCGGTGCACTGTa                      <  1:59492/143‑1 (MQ=255)
                                                                                                             ttCTGGCACTATTTTTTCTGGGTTGAGCATATTCAACGCTTTGCACTGGATGATGCCCAACATAGAGCTCCGTTCTGGTACTACGTGCCGGTCATCATTGCCGGTAGCCTGCCGTGGCTGGGATTACTCCCCGGTGCACTGTa                      <  1:59498/143‑1 (MQ=255)
                                                                                                                       aTTTTTTCTGGGTTGAGCATATTCAACGCTTTGCACTGGATGATGCCCCACATAGAGCTCCGTTCTGGTACTACGTGCCGGTCATCATTGCCGGTAGCCTGCCGTGGCTGGGCTTACTCCCCGGTGCGCTGTCCGCAGGCTgg            >  1:273629/1‑143 (MQ=255)
                                                                                                                           tttCTGGGTGTATCATAGTCAACGTTTTGCACTGGATGATGCCCAACATAGAGCTCCGTTCTGGTACTACGTGCCGGTCATCATTGCCGGTAGCCTGCCGTGGCTGGGATTACTCCCTGGTGCACTGTACACAGGCTGGaaaa        <  2:347192/143‑1 (MQ=255)
                                                                                                                            ttCTGGGTTGAGCATATTCAACGCTTTGCACTGGATGATGCCCAACATAGAGCTCCGTTCTGGTACTACGTGCCGGTCATCATTGCCGGTAGCCTGCCGTGGCTGGGATTACTCCCAGGTGCACCGGGCACAGGGTGTgaaaa       >  1:316080/1‑143 (MQ=255)
                                                                                                                                 ggTTGAGCCTATGCAACGCTTTGCACTGGATGATGCCCAACATAGAGCTCCGTTCTGGTACTACGTGCCGGTCATCATTGCCGGTAGCCTGCCGTGGCTGGGATTCCTCCCCGGTGCACTGTACACAGGCTGGAAAAACCGCa  <  2:270193/143‑1 (MQ=255)
                                                                                                                                  |                                                                                                                                             
GACGCAAAAACGCTGGAAAGATCTCTTTATTTACGGCTGGCTGGCGGTTATCAGTTGCGTACTGACGGTTCTCCCTTGGGGACTGGCGATAGCGCAGCGGGAGCCTAACTTCTGGCACTATTTTTTCTGGGTTGAGCATATTCAACGCTTTGCACTGGATGATGCCCAACATAGAGCTCCGTTCTGGTACTACGTGCCGGTCATCATTGCCGGTAGCCTGCCGTGGCTGGGATTACTCCCCGGTGCACTGTACACAGGCTGGAAAAACCGCA  >  NC_000913/2371495‑2371766

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.