New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2371625 =	37 (0.960)	3 (0.080)	3/276	5.6	7.8%	coding (718/1653 nt)	arnT	4‑amino‑4‑deoxy‑L‑arabinose transferase
	?	NC_000913	2371665 =	35 (0.940)					coding (758/1653 nt)	arnT	4‑amino‑4‑deoxy‑L‑arabinose transferase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GCTGGCTGGCGGTTATCAGTTGCGTACTGACGGTTCTCCCTTGGGGACTGGCGATAGCGCAGCGGGAGCCTAACTTCTGGCACTATTTTTTCTGGGTTGAGCATATTCAACGCTTTGCACTGGATGATGCCCAACATAGAGCTCCGTTCTGGTACTACGTGCCGGTCATCATTGCCGGTAGCCTGCCGTGGCTGGGATTACTCCCCGGTGCACTGTACACAGGCTGGAAAAACCGCAAGCATTCCGCAACCGTCTATTTGTTGAGCTGG  >  NC_000913/2371530‑2371798                                                                                                                                        |                                                                                                                                      gcggggcggcGGTTATCGGGTGCGTACTGACGGTTCGTCCTGGGGGACTTGTGATAGCGCAGGGGGAGCCTCACTGCTGGCACGATTTTTTCTGGGTTGAGCATATTCAACGCTTTGCACTGGATGATGCCCAACATAGAGCt                                                                                                                                <  2:516289/136‑1 (MQ=255)  ctggctggCGGTTATCAGTTGCGTACTGACGGTTCTCCCTTGGGGACTGGCGATAGCGCAGCGGGAGCCTAGCGTCTGGCACTATTTATTCTGCGTTGAGCATATGCAACGCTTTGCACTGGCTGATGCCCGACATCGCGCTc                                                                                                                               >  2:567446/1‑143 (MQ=255)     gctggcGGTTATCAGTTGCGTACTGACGGTTCTCCCTTGGGGACTGGCGATAGCGCAGCGGGAGCCTAACTTCTGGCACTATTTTTTCTGGCCTGCTCAGATTCAACGCTTTGCACTGGCTGATGCCCAACATAGAGCTCCGt                                                                                                                            >  1:475817/1‑143 (MQ=255)         gcGGTTATGAGTTGCGTACTGACGGTTCTCCCTTGGGGACTGGCGATAGCGCAGCGGGAGCCTAACTTCTGGCACTATTTTTTCTGGGTTGAGCATATTCAACGCTTTGCACTGGATGATGCCCAACATAGAGCTCCGTTCTg                                                                                                                        <  2:644538/143‑1 (MQ=255)         gcGGTTATCAGTTGCGTACTGACGGTTCTCCCTTGGGGACTGGCGATAGCGCAGCGGGAGCCTAACTTCTGGCACTATTTTTTCTGGGTTGAGCATATTCAACGCTTTGCACTGGATGATGCCCAACATAGAGCTCCGTTCTg                                                                                                                        <  2:502972/143‑1 (MQ=255)         gcGGTTATCAGTTGCGTACTGACGGTTCTCCCTTGGGGACTGGCGATAGCGCAGCGGGAGCCTAACTTCTGGCACTATTTTTTCTGGGTTGAGCATATTCAACGCTTTGCACTGGATGATGCCCAACATAGAGCTCCGTTCTg                                                                                                                        <  2:517927/143‑1 (MQ=255)             ttATCAGTTGCGTACTGACGGTTCTCCCTTGGGGACTGGCGATAGCGCATCGGGAGCCTAACTTCTGGCACTATTTTTTCTGGGTTGAGCATATTCAACGCTTTGCACTGGCTGATGCCCAACATAGAGCTCCCTTCTGGtgc                                                                                                                    >  1:365027/1‑141 (MQ=255)             ttATCAGTTGCGTACTGACGGTGCTCCCTTGGGGACTGGCGATAGCGCAGCGGGAGCCTAACTTCTGGCACTATTTTTTCTGGGTTGAGCATATTCAACGCTTTGCACTGGATGATGCCCAACATAGAGCTCCGTTCTGGtac                                                                                                                    <  2:478258/143‑1 (MQ=255)              caTCAGCTCCGTACTGACGGTCCTCCCTTGGGCACTGCCGATAGCGCAGCGGGAGCCTAACTTCTGGCACTATTTTTTCTGGGTTGAGCATATTCAACGCTTTGCACTGGATGATGCCCAACATAGAGCTCCGTTCTGGtact                                                                                                                   <  1:353207/142‑1 (MQ=255)                tCAGTTGCGTACTGACGGTTCTCCCTTGGGGACTGGCGATAGCGCAGCGGGAGCCTAACGTCTGGCACTATTTTTTCTGGGCTGAGCATATTCAACGCTTTGCACTGGATGATGCCCAACATAGAGCTCCGTTCTGGtactac                                                                                                                 >  2:43190/1‑143 (MQ=255)                      tggTACTGACGGTTCTCCCTGGGGGACTGGCGATAGCGCAGCGGGAGCCTAACTTCTGGCACTATTTTTTCTGGGTTGAGCAGATTCAACGCTTTGCACTGGATGATGCCCAACATAGAGCTCCGTTCTGGTACTACGTGCCg                                                                                                           <  2:194929/141‑1 (MQ=255)                      gCGTACTGACGGTTCTCCCTTGGGGACTGGCGATAGCGCAGCGGGAGCCTAACTTCTGGCACTATTTTTTCTGGGTTGAGCATATTCAACGCTTTGCACTGGATGATGCCCAACATAGAGCTCCGTTCTGGTACTACGTGCCg                                                                                                           <  2:474774/143‑1 (MQ=255)                       ctgccTGACGGTTATGCCTGGGGGACTGGCGATAGGGTAGCGGGCGCCTAACAATTGCCAGTATGTTTTCTGGGTTGAGCATATTCATCGCTGTGCACTGGATGATGCCCAACATAGAGCTCCGTTCTGGTACTACGTGCCgg                                                                                                          <  2:417620/139‑1 (MQ=255)                          aCTGACGGTTCTCCCTTGGGGACTGGCGATAGCGCAGCGGGAGCCTAACTTCTGGCACTATTTTTTCTGAGTTGAGCATATTCAACGCTTTGCACTGGATGATGCCCAACATAGAGCTCCGTGCTGGTACTACGTAccacgca                                                                                                       >  2:616266/1‑138 (MQ=255)                                                 tGGCGATAGCGCAGCGGGAGCCTAACTTCTGGCACTATTTTTTCTGGGTTGAGCATATTCAACGCTTTGCACTGGATGATGCCCCACATAGAGCTCCGTTCTGGTCCTACGTGCCGGTCATCATTGCCGGTAGCCTGCCGTgg                                                                                >  2:474914/1‑143 (MQ=255)                                                   gCGATAGCGCAGCGGGAGCCTAACTTCTGGCACTCTTTTTTCTGGGTTGAGCATATTCAACGCTTTGCACTGGATGATGCCCAACATAGAGCTCCGTTCTGGTACTACGTGCCGGTCATCATTGCCGGTGGTCTGTCGCGGCt                                                                              >  2:125524/1‑143 (MQ=255)                                                       tAGCGCAGCGGGAGCCTATCTTCTGGCGCTATTTTTTCTGGCTTGAGCATATTCAACGCTTTGCACTGGATGATGCCCAACATAGAGCTCCGTTCTGGTACTACGTGCCGGTCATCATTGCCGGTAGCCTGCCGTGGCTGGGa                                                                          <  2:501783/143‑1 (MQ=255)                                                                  gAGCCTAACTTCTGGCACTATTTTTTCTGGGTTGAGCATATTCAACGCTTTGCACTGGATGATGCCCAACATAGAGCTCCGTTCTGGTACTACGTGCCGGTCATCATTGCCGGTAGCCTGCCGTGGCTGGGATTACTCCCCgg                                                               <  1:688555/143‑1 (MQ=255)                                                                      cTAACTTCTGGCACTATTTTTTCTGGGTTGAGCATATTCAACGCTTTGCACTGGATGATGCCCAACATAGAGCTCCGTTCTGGTACTACGTGCCGGTCATCATTGCCGGTAGCCTGCCGTGGCTGGGATTACTCCCCGGTGCa                                                           <  1:192876/143‑1 (MQ=255)                                                                      cTAACTTCTGGCACTATTTTTTCTGGGTTGAGCATATTCAACGCTTTGCACTGGATGATGCCCAACATAGAGCTCCGTTCTGGTACTACGTGCCGGTCATCATTGCCGGTAGCCTGCCGTGCCTGGGAATATCCCGCCGTGCa                                                           >  2:408678/1‑143 (MQ=255)                                                                      cTAACTTCTGGCACTATTTTTTCTGGGTTGAGCATATTCAACGCTTTGCACTGGATGATGCCCAACATAGAGCTCCGTTCTGGTACTACGTGCACGTCATCATTGCCGGTAGCCTGCCGTGGCTGGCATTACTCGCAGGTGCa                                                           >  2:179099/1‑143 (MQ=255)                                                                          cTTCTGGCACTATTTTTTCTGGGTTGAGCATATTCAACGCTTTGCACTGGATGATGCCCAACGTGGAGCTCCGTTCTGGTACTACGTGCGGGGCATCATTGCCGGTAGCCTGCCGTGGCGGGGCGTGCTGCCCGGTCCCCTGt                                                       >  2:347220/1‑143 (MQ=255)                                                                           ttCTGGCACTATTTTTTCTGGGTTGAGCATATTCAACGCTTTGCACTGGATGATGCCCAACATAGAGCTCCGTTCTGGTACTACGTGCCGGTCATCATTGCCGGTAGCCTGCCGTGGCTGGGATTACTCCCCGGTGCACTGTa                                                      <  1:59498/143‑1 (MQ=255)                                                                           ttCTGGCACTATTTTTTCTGGGTTGAGCATATTCAACGCTTTGCACTGGATGATGCCCAACATAGAGCTCCGTTCTGGTACTACGTGCCGGTCATCATTGCCGGTAGCCTGCCGTGGCTGGGATTACTCCCCGGTGCACTGTa                                                      <  1:59492/143‑1 (MQ=255)                                                                                     aTTTTTTCTGGGTTGAGCATATTCAACGCTTTGCACTGGATGATGCCCCACATAGAGCTCCGTTCTGGTACTACGTGCCGGTCATCATTGCCGGTAGCCTGCCGTGGCTGGGCTTACTCCCCGGTGCGCTGTCCGCAGGCTgg                                            >  1:273629/1‑143 (MQ=255)                                                                                         tttCTGGGTGTATCATAGTCAACGTTTTGCACTGGATGATGCCCAACATAGAGCTCCGTTCTGGTACTACGTGCCGGTCATCATTGCCGGTAGCCTGCCGTGGCTGGGATTACTCCCTGGTGCACTGTACACAGGCTGGaaaa                                        <  2:347192/143‑1 (MQ=255)                                                                                          ttCTGGGTTGAGCATATTCAACGCTTTGCACTGGATGATGCCCAACATAGAGCTCCGTTCTGGTACTACGTGCCGGTCATCATTGCCGGTAGCCTGCCGTGGCTGGGATTACTCCCAGGTGCACCGGGCACAGGGTGTgaaaa                                       >  1:316080/1‑143 (MQ=255)                                                                                               ggTTGAGCCTATGCAACGCTTTGCACTGGATGATGCCCAACATAGAGCTCCGTTCTGGTACTACGTGCCGGTCATCATTGCCGGTAGCCTGCCGTGGCTGGGATTCCTCCCCGGTGCACTGTACACAGGCTGGAAAAACCGCa                                  <  2:270193/143‑1 (MQ=255)                                                                                                 ttGAGCATATTCAACGCTTTGCACTGGATGATGCCCAACATAGAGCTCCGTTCTGGTACTACGTGCCGGTCATCATTGCCGGTAGCCTGCCGTGGCTGGGATTACTCCCCGGTGCACTGTACACAGGCTCGGAAAACCGCAAg                                >  2:521135/1‑143 (MQ=255)                                                                                                  tGAGCATATTCAACGCTTTGCACTGGATGCTAACCAACAAAGTGCTCCGTTCTGGTACTGCGTGCCGGTCATGATTGCCGGTAGCCTGCCGTAGCTGGGATTACTCACCGGTGCACTGTACACAGGCTGGAAGAACCGAAAGc                               >  2:341415/1‑143 (MQ=255)                                                                                                             aaCGCTTTGCACTGGATGATGCCCAACATAGAGCTCCGTTCTGGTACTACGTGCCGGTCATCATTGCCGGTAGCCTGCCGTGGCTGGGATTACTCCCCGGTGCACTGTATACAGGCTGGAAAAACGGGAAGCATTCCGCAAcc                    >  2:419732/1‑143 (MQ=255)                                                                                                             aaCGCTTTGCACTGGATGATGCCCAACATAGAGCTCCGTTCTGGTACTACGTGCCGGTCATCATTGCCGGTAGCCTGCCGTGGCTGGGATTACTCCCCGGTGCACTGTACACAGGCTGGAAAAACCGCAAGCCTTCCGCaccg                    >  2:653571/1‑140 (MQ=255)                                                                                                               cGCTTTGCACTGGATGATGCCCAACATAGAGCTCCGTGCTGGAACTACGTGCCGGGGATCAGTGCCGGTAGCCGGCGGTGGCTGGGGTTACCTCCCGGTGCAGTGTAGACAGGCAGGAAAAACCGCAAGCAGTCGGCCACCGt                  >  2:157052/1‑143 (MQ=255)                                                                                                                      cACTGGAGGATGCCCAACATAGAGCTCCGTTCTGGTACTACGTGCCGGTCATCATTGCCGGTAGCCTGCCGTGGCTGGGATTACTCCCCGGTGCACTGTACACAGGCTGGAAAAACCGCAAGCATTCCGCAACCGTCTATttg           <  1:630647/143‑1 (MQ=255)                                                                                                                               atgCCCAACATAGAGCTCCGTTCTGGTACTACGTGCCGGTCATCATTGCCGGTAGCCTGCCGTGGCTGGGATTACTCCCCGGTGCACTGTACACAGGCTGGCAAAACCGCAAGCATTCCGCAACCGTCTACTTGCTGAGCTgg  >  2:412576/1‑143 (MQ=255)                                                                                                                                        |                                                                                                                                      GCTGGCTGGCGGTTATCAGTTGCGTACTGACGGTTCTCCCTTGGGGACTGGCGATAGCGCAGCGGGAGCCTAACTTCTGGCACTATTTTTTCTGGGTTGAGCATATTCAACGCTTTGCACTGGATGATGCCCAACATAGAGCTCCGTTCTGGTACTACGTGCCGGTCATCATTGCCGGTAGCCTGCCGTGGCTGGGATTACTCCCCGGTGCACTGTACACAGGCTGGAAAAACCGCAAGCATTCCGCAACCGTCTATTTGTTGAGCTGG  >  NC_000913/2371530‑2371798

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.