Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	4,001,645	Δ5 bp	coding (220‑224/951 nt)	corA →	magnesium/nickel/cobalt transporter

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	4001645	4001649	5	33 [0]	[0] 34	corA	magnesium/nickel/cobalt transporter

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4001644	0 (0.000)	33 (0.860)	30/284	0.3	100%	coding (219/951 nt)	corA	magnesium/nickel/cobalt transporter
	?	NC_000913	4001650 =	0 (0.000)					coding (225/951 nt)	corA	magnesium/nickel/cobalt transporter

TATGGATTGATCTTGTCGAACCGGACGACGACGAGCGACTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATATTCACTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGATGGTCGTCTGTTTACTCTGCGTGAGCGTGAACTGCCCGCTTTTCGTCTGTATCGTA  >  NC_000913/4001505‑4001774                                                                                                                                            |                                                                                                                                   tATGGACTGATCTTGTCGAACCGGACGACGACGAGCGACTGCGCGTACAATCTGAACTTGGCCAGAGCCTTGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctc                                                                                                                                 <  1:141410‑M1/143‑4 (MQ=255)     gATTGATCTTGTCGAACCGGACGACGACGAGCGACTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttc                                                                                                                             <  1:431676‑M1/143‑8 (MQ=255)             ttggctaaccggacGACGGCGAGCGACGGCGGGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctt                                                                                                                     <  2:103741‑M1/137‑16 (MQ=255)                  gcaccGGACGACCACGAGCGACTGCGCGTACCACCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaag                                                                                                                <  1:181028‑M1/141‑21 (MQ=255)                  gAACCGGACGACGACGAGCGACTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaag                                                                                                                <  1:678886‑M1/143‑21 (MQ=255)                         acgacgacgAGCGACTGCGCGTACAATCTGAACTTGGCCAGGGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATccccttcttcttctttgaagatgcgga                                                                                                         <  1:454278‑M1/143‑28 (MQ=255)                              gacgaGCGACTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatc                                                                                                    >  1:347527‑M1/1‑111 (MQ=255)                                   gCGACGGCGCGTACAAGATAAACGGTGCCAGATCCTGGCAACCCGCCCTGAACAGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccgtcttcttctttgaagatgcggaagatcacgcc                                                                                               <  2:276962‑M1/143‑38 (MQ=255)                                    cgcctgcGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGGTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccg                                                                                              <  1:271064‑M1/140‑39 (MQ=255)                                     gACTGCGCGTACAAGCTGAACGTGGCCGGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccgg                                                                                             <  2:293625‑M1/143‑40 (MQ=255)                                                   tCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtgg                                                                               >  2:214611‑M1/1‑90 (MQ=255)                                                         ctgggccaGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcattta                                                                         <  2:243967‑M1/140‑60 (MQ=255)                                                         cTTGGCCCGAGCCTGGCAACCCTCCCGGAACGCGAAGACATCGAAGCATCGGCACCTTTCTTTGAAGACGACGACGGCCTGCATctcctgcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcattta                                                                         <  2:254647‑M1/143‑60 (MQ=255)                                                          ttGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttcc                                                                        >  2:380378‑M1/1‑83 (MQ=255)                                                                agagCCTGGCAACCCGCCCGAAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccg                                                                  <  2:262078‑M1/143‑67 (MQ=255)                                                                 gagCCTGGCAGCGCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgcctgtaactccactgtggcatttaccatccgt                                                                 <  2:85106‑M1/143‑68 (MQ=255)                                                                      ggtcaacCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCAGctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatgg                                                            <  2:13882‑M1/140‑73 (MQ=255)                                                                         cAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccgggaactccactgtggcatttaccatccgtgatggtcg                                                         >  1:277307‑M1/1‑68 (MQ=255)                                                                          aaCCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTACACAGAAGATAACTACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgt                                                        <  1:693521‑M1/143‑77 (MQ=255)                                                                               gcccgGAACTGGAAGACCTCGACGCATCGGCACGTCTCTTTGAAGGCGACGACGGCCTGCATctccttattcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcatctgtt                                                   <  1:273980‑M1/143‑82 (MQ=255)                                                                               gcccgGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcatctgtt                                                   <  1:640442‑M1/143‑82 (MQ=255)                                                                                       cTGGAAGACAGCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccgttaactccactgtggcatttaccatccgtgatggtcgtctgtttactctgc                                           <  1:292209‑M1/143‑90 (MQ=255)                                                                                          gAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccctccgggatggtcggctgtttactctgcgtg                                        >  1:613719‑M1/1‑51 (MQ=255)                                                                                               cagcgaaGCAGCGGCACGTTTCTTCGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctgtttactctgcgtgagcgt                                   <  1:190207‑M1/140‑98 (MQ=255)                                                                                                aTCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctgtttactctgcgtgagcgcg                                  >  1:278003‑M1/1‑45 (MQ=255)                                                                                                         tCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctgtttactctgcgtgatcgtgaagtgcccg                         >  1:532475‑M1/1‑36 (MQ=255)                                                                                                          cGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctgtttactctgcgtgagcgtgaactgcccgc                        >  1:666582‑M1/1‑35 (MQ=255)                                                                                                            gCACTTTTCTTTGAAGACTACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctgtttactctgcgtgagcgtgaactgcccgctt                      <  2:432900‑M1/143‑111 (MQ=255)                                                                                                              aCGTTTCTTGGCAGACGCCGCCGGCCGGCACctccttcttcttctttcaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctgtttactctgcgtgagcgtgaactgcccgctttt                    <  1:518600‑M1/143‑113 (MQ=255)                                                                                                                       tGAAGACGACGACGGCCGGCGTctccttcttcttctttgaagatgcggaagatcacgccggtgactccacggtggcatttaccatccgtgatggtcgtctgtttactctgcgtgagcgtgaactgcccgctgttcgtctgtat           <  2:591259‑M1/143‑122 (MQ=255)                                                                                                                           gacgacgacGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctgtttactctgcgtgagcgtgaactgcccgcttttcgtctgtatcgta       <  1:54097‑M1/143‑126 (MQ=255)                                                                                                                              gccgttggcttgcaTctccttctgtgtctgtggagatgcggaagagcacgccggtaactccactgtggcattttccatccgtgatggtcgtctgtttactctgcgtgagcgtgaactgcccgcttttcgtctgtatcgtatgc    <  1:570790‑M1/137‑129 (MQ=255)                                                                                                                                cgacgGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctgtttactctgcgtgagcgtgaactgcccgcttttcgtctgtatcgtatgcgg  >  2:267810‑M1/1‑13 (MQ=255)                                                                                                                                            |                                                                                                                                   TATGGATTGATCTTGTCGAACCGGACGACGACGAGCGACTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATATTCACTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGATGGTCGTCTGTTTACTCTGCGTGAGCGTGAACTGCCCGCTTTTCGTCTGTATCGTA  >  NC_000913/4001505‑4001774

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑