| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,815,859 | Δ82 bp | [rph]–[rph] | [rph], [rph] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3815859 | 3815940 | 82 | 49 [0] | [0] 49 | [rph]–[rph] | [rph],[rph] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3815858 | 0 (0.000) | 48 (1.080) | 42/262 | 0.1 | 100% | pseudogene (24/48 nt) | rph | ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH |
| ? | NC_000913 | 3815941 = | 0 (0.000) | pseudogene (609/669 nt) | rph | ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH | |||||
ACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTC > NC_000913/3815719‑3816000 | gcctGCTTGCGAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgt < 1:589286‑M1/142‑4 (MQ=255) ttgctAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTACATGCCTTAGCTCATCATCTGACTTTTCTACAGACAAAAAAAAGGCCACTCATCAGTCGCCTTACACATCAGTTTGCCAGCACCGCCTCCTGAcgtccccgg > 2:387304‑M1/1‑134 (MQ=255) aaGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcactt < 1:527732‑M1/143‑15 (MQ=255) cgcAAATTCAATACACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaa < 1:69793‑M1/143‑18 (MQ=255) aaaTTCAATACACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatga < 1:51972‑M1/143‑21 (MQ=255) aaaTTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatta > 1:585206‑M1/1‑123 (MQ=255) aaTTCCACAAACTGGCGCTGATATGGTTTCATGCCCTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgat < 1:137608‑M1/143‑22 (MQ=255) aaTTCAATAGACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgttccctgcacttcaatgat < 2:808015‑M1/143‑22 (MQ=255) aTTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatg < 1:689954‑M1/143‑23 (MQ=255) aaaCTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGAcgtcccctgcacttcaatgatgcgcccgc > 2:598093‑M1/1‑114 (MQ=255) ggCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcg < 1:270847‑M1/143‑35 (MQ=255) ggCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTGTCTACAGACAAAAAAAAGGCGACTCATCAGTCTCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcg < 2:715442‑M1/143‑35 (MQ=255) ggCGCTGATATGGTTTCATGCCTTCACTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcg > 1:370431‑M1/1‑109 (MQ=255) gcTGATAGGGTTACATGCCGTCGCTCCTCATCTTACTTTGCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtc < 1:514936‑M1/143‑38 (MQ=255) tGATATGGTTTCATGCCTTCGCTCCTCGTCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcat < 2:127542‑M1/143‑40 (MQ=255) atatGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatca > 1:679926‑M1/1‑102 (MQ=255) atGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcctcact > 1:650861‑M1/1‑100 (MQ=255) atGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgccccctgcccttcaatgctgcccccgccttcggtcctccct > 1:391699‑M1/1‑100 (MQ=255) gTTGCATGACGTTGCGCCTCATCTTGCGTTTCTGCAGGCAAGAAGAAGGCGACTCTTCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgccccctgcacttcaatgatgcgcccgtcttcggtcatcactacg < 2:490392‑M1/143‑47 (MQ=255) ttCATGCCATCGCTCCTCATCTTACTGTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgtt < 2:626148‑M1/143‑49 (MQ=255) gCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatccctacgttcatgt > 1:226942‑M1/1‑90 (MQ=255) cTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTAGCCTTAAAACTCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcactcacatgatgcgcccgccctcggtaataactacgctcacgacg > 2:673705‑M1/1‑88 (MQ=255) tCGCTCCTCATCTGAACTTGCTCCACACAAAAAACAGGCGACTCATCAGTCCCGCTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgattcccccgtcttcggtcatcactacgttcatgtcggt < 2:511470‑M1/143‑58 (MQ=255) cGCTCCTCATCTTACTTTTCTACATACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtc < 1:633640‑M1/143‑59 (MQ=255) cGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtc > 1:262310‑M1/1‑85 (MQ=255) ctcctcATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctc > 1:207210‑M1/1‑83 (MQ=255) ctcATCTTTCTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgc < 1:519783‑M1/143‑64 (MQ=255) ctcATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgtcccttttcgttcatcactacgttcatgtcgttctcctc > 1:395346‑M1/1‑80 (MQ=255) tCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggca < 1:60485‑M1/143‑68 (MQ=255) tACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGATTGCCAGCGCCGCCTGCTGCcgtcccctggacttcaatgctgcgcccgtcttcggtcatcactacgttcatgtcgatctctgcggcacgggcttcaac > 2:60598‑M1/1‑65 (MQ=255) cAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgt > 2:271395‑M1/1‑63 (MQ=255) atttttaaggcgacTGATGAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattcc > 1:493944‑M1/7‑58 (MQ=255) aacaaaaaggcGACTCATCAGTCGCCTTAAAGATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagactcttcaacgtattcc < 2:743262‑M1/140‑86 (MQ=255) aaaaaaaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattcc > 1:527069‑M1/1‑58 (MQ=255) aaaaaaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcaattcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattcca > 1:539240‑M1/1‑57 (MQ=255) aaaaaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcctcccctgcgcgacaatgatgcgcccgtcttcggtcctcactacctccatgtcggtctctgcggcagagccgtccgcgcattccac > 2:424955‑M1/1‑56 (MQ=255) tttaaggcGACTGATGAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcgtgtctgtctctgcggcacagtcttcaacgtattccaga > 1:41994‑M1/4‑55 (MQ=255) tcatcaGTCGCCTTAACAATCAGGTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgc < 1:799104‑M1/143‑100 (MQ=255) aaaTCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcctcggtcatcactacgttcatgtcggtctctgcggcacagtcttcaacgtattccagagcgcaaaccccttcgccgttcaaaact > 1:854432‑M1/1‑28 (MQ=255) aaaTCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatcatgcgcccgtcttcggtcatcactacgttcatgtcggcctctgcggcagcgtcttcaccgtattccagaccgcaacccgcctcgcccctcacactt > 2:832097‑M1/1‑28 (MQ=255) cAGTCTTCCAGCGCCGCCTTCTGCcgtcccctgcacttcaagcatgcgcccgtcttcggtcatcactacgttcatgtcggtccctccggcacagtcttcaacgtactccagctcgcaaaccgcttcgccgttcacaattccga < 2:239727‑M1/143‑120 (MQ=255) gTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtcttccagatcgcaaacagcttcgacgttcacactaccgact > 1:73288‑M1/1‑22 (MQ=255) ttGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtcttccagatcccccaccccttcgccgttcacaattccgaaaga > 1:316820‑M1/1‑20 (MQ=255) aGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactccgttcatgtcggtctctgcggcagagtctccaacgtattcaagatagcgacccgcttcgccgctcaccactccgccacaacctg > 1:595947‑M1/1‑15 (MQ=255) gcgcCGCCTTCTGCcgtccccagcactacaacgacgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgc < 1:43061‑M1/143‑130 (MQ=255) cgccgcCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcg > 1:64798‑M1/1‑13 (MQ=255) ccgccTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggc > 1:882143‑M1/1‑11 (MQ=255) ccgccTCCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcacccctacgttcatgtcggtctctgcggcagaggctgcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggc < 1:13666‑M1/143‑133 (MQ=255) ccgtccgccgcagttcactgatgcgcccgtcttcggtcatcactccgttcatgtcgttctctgcggcagagtcttctacttattctagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggctaccatccct < 2:542853‑M1/143‑143 (MQ=255) | ACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTC > NC_000913/3815719‑3816000 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |