New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 258675	NA (NA)	20 (1.010)	19/282	0.1	100%	noncoding (1/768 nt)	IS1	repeat region
	?	NC_000913	1303174 =	0 (0.000)					coding (276/921 nt)	oppB	oligopeptide ABC transporter permease

CGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAG‑GGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/258545‑258675 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACC  >  NC_000913/1303174‑1303288                                                                                                                                                                                                                                                         CGGCGGTGCTTTTGCCGTTCCGCACCACCCCGTCAGTAGCTGAACAGGAG‑GGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCCGTTTTCCCGT                                                                                                         <  2:312141/143‑1            TTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAG‑GGACAGCTGATAGAAACAGAAGCCACTGGCGCACTTCAAAACCACCATCATAAACTAAATCAGTAAGTTGACAGCATCACCCAGTATTCACGTTTCTGCCAAAC                                                                                              >  1:283983/1‑143               CCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAG‑TGACAGCTGATAGAATTAGTAGCCATTGGAGCACCTCAAAATCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCAGTTTTCCCGTTTCTGCCAAACTGG                                                                                           <  1:383337/143‑1               CCGTTACGCACAACCCCGTCAGTAGCCGAACAGGAT‑GGACAGCTGATAGAAACAGAATCCACTGGAGCACCTCAAAAACACCATCATACGCTAAAGCGGTAAGTTGGCAGCATCACCCAGTTTTCCCGTTTCTGCCAAACTGG                                                                                           <  1:99583/143‑1                CGTTACGCACCACCCCGTCTGTTGCTGAACAAAAGAGTAGAGTAGA‑AAAAACAAAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCAGTTTTCCCGTTTCTGCCAAACTGGG                                                                                          <  1:380938/143‑1                        ACCACCCCGTCAGTAGCTGAACAGGAG‑GGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACAGCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCACTTTTCCCGTTTCTGACAAACTGGGCGCCGCcg                                                                                  >  2:242672/1‑141                                GTCAGTAGCTGAACAGGAG‑GGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAACAACACCATCATACACTAAATCAGTAAGTTGGCAGCATAACCCAATATTCCCGTTTCTGCCAAACTGTGAGCCGCAGCATTTTTC                                                                          >  1:63203/1‑143                                       GCTGAAGAGGGG‑GTACAGCGGATAGAAACACAAGCCACTGGAGCACCTCAAAAACACCTTCATACACTCAATCAGTAAGTTTGCAGCATCACCCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGG                                                                   <  2:69214/143‑1                                        CTGAACAGGAG‑GGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCCTACACTAAATCAGTAAGTTGGCAGCATCACCCAGTTTTCCAGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGT                                                                  >  1:214549/1‑143                                         TGAACAGGAG‑GGACAGTTGATAGAAACAGAAGCCATTGTAGCACCTCAAAAATATCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTA                                                                 <  1:240593/143‑1                                                  agcGACAGCTGATAGAAACAGAAGCCACTGGAGCACGTCAAAAACACCATCATACACTAAAGCAGTAAGTTGGCAGCATCAGTCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGG                                                         <  2:269419/140‑1                                                  G‑GGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCACAAACACCATCATACACCAAATCAGTAAGTTGGCAGCATCACCCAGTTTTACAAAATCAACAAAACAGGAAGCCGAAGCATTTTTCCTTGCGGTAATACTGGGT                                                        >  1:46193/1‑143                                                      ACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCATTGCGGTAATACTGGGTGTT                                                     >  1:123380/1‑143                                                               AGAATCAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGC                                            <  1:315061/143‑1                                                                                      CTCAACACCACCGTCAGACACTAAATCAGTAAGTTGGCAGCAGCACCCAGTTTTCCCGTTTCTGCCAAACGGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAAACAAAA                     <  2:5787/143‑1                                                                                             ACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCAGTTTTCCCGTTTCTGCCAACCTGGGAGCCGAAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCCTCAAAACAAGACACCAAA              >  2:63475/1‑143                                                                                                CCATCATATACTAATTCAGTAAGTTGGCAGCATCACCTAGTTTTCCCGTTTCTGCGAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGG           <  2:270457/143‑1                                                                                                      TACACTAAATCAGTAAGTTGGCAGCATCACCCAGTTTTCCCGTTTCTGCCAACCTGGGAGCCGCAGCATTTTTCCTTGAGGAAATAATGGGTGTTAGAGCTGGCGTTATTGCCGCATTAAAACAAAACACAAAAAGGGACTAT     >  1:178811/1‑143                                                                                                       ACACTAAATCAGTAAGTTGGCAGCATCACCCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTCGAGCTGGCGTTCTTGCTACTTTAAAACCAAACACCAAATGGGACCATA    >  2:284547/1‑143                                                                                                         ACTAAATCAGTAAGTTGGCAGCATCACCCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAAACCAAACCCCAAGTGGGACTATACC  >  2:4069/1‑143                                                                                                                                                                                                                                                         CGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAG‑GGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/258545‑258675 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACC  >  NC_000913/1303174‑1303288

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.