New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 258675	NA (NA)	20 (1.010)	19/282	0.1	100%	noncoding (1/768 nt)	IS1	repeat region
	?	NC_000913	1303174 =	0 (0.000)					coding (276/921 nt)	oppB	oligopeptide ABC transporter permease

ATCGAAGCGAAATATCATCTTAATGATCCGATCATGACACAGTATTTCAGCTACCTGAAACAACTGGCGCACGGTGATTTCGGTCCATCGTTTAAATATAAAGATTATTCGGTCAATGACTTGGTTGCATCCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACC  >  NC_000913/1303043‑1303288                                                                                                                                    |                                                                                                                   cggcggtgcttttgccgttccgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCCGTTTTCCCGt                                                                                                         <  2:312141‑M2/12‑1 (MQ=255)            ttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggcgcacttcaaaaccaccatcataaactaaatcagtaagttgacagcatcaccCAGTATTCACGTTTCTGCCAAAc                                                                                              >  1:283983‑M2/121‑143 (MQ=255)               ccgttacgcaccaccccgtcagtagctgaacaggagtgacagctgatagaattagtagccattggagcacctcaaaatcaccatcatacactaaatcagtaagttggcagcatcaccCAGTTTTCCCGTTTCTGCCAAACTgg                                                                                           <  1:383337‑M2/26‑1 (MQ=255)               ccgttacgcacaaccccgtcagtagccgaacaggatggacagctgatagaaacagaatccactggagcacctcaaaaacaccatcatacgctaaagcggtaagttggcagcatcaccCAGTTTTCCCGTTTCTGCCAAACTgg                                                                                           <  1:99583‑M2/26‑1 (MQ=255)                cgttacgcaccaccccgtctgttgctgaacaaaagagtagagtagaaaaaacaaaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCAGTTTTCCCGTTTCTGCCAAACTggg                                                                                          <  1:380938‑M2/27‑1 (MQ=255)                        accaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacagcatcatacactaaatcagtaagttggcagcatcaccCACTTTTCCCGTTTCTGACAAACTGggcgccgccg                                                                                  >  2:242672‑M2/109‑141 (MQ=255)                                gtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaacaacaccatcatacactaaatcagtaagttggcagcataaccCAATATTCCCGTTTCTGCCAAACTGTGAGCCGCAGCATTTTTc                                                                          >  1:63203‑M2/101‑143 (MQ=255)                                       gctgaagagggggtacagcggatagaaacacaagccactggagcacctcaaaaacaccttcatacactcaatcagtaagtttgcagcatcaccCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCgg                                                                   <  2:69214‑M2/50‑1 (MQ=255)                                        ctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcctacactaaatcagtaagttggcagcatcaccCAGTTTTCCAGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGt                                                                  >  1:214549‑M2/93‑143 (MQ=255)                                         tgaacaggagggacagttgatagaaacagaagccattgtagcacctcaaaaatatcatcatacactaaatcagtaagttggcagcatcaccCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTa                                                                 <  1:240593‑M2/52‑1 (MQ=255)                                                 agcgacagctgatagaaacagaagccactggagcacgtcaaaaacaccatcatacactaaagcagtaagttggcagcatcagtCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTggg                                                         <  2:269419‑M2/60‑1 (MQ=255)                                                  gggacagctgatagaaacagaagccactggagcacctcacaaacaccatcatacaccaaatcagtaagttggcagcatcaccCAGTTTTACAAAATCAACAAAACAGGAAGCCGAAGCATTTTTCCTTGCGGTAATACTGGgt                                                        >  1:46193‑M2/83‑143 (MQ=255)                                                     acagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCATTGCGGTAATACTGGGTGtt                                                     >  1:123380‑M2/80‑143 (MQ=255)                                                              agaatcagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGc                                            <  1:315061‑M2/73‑1 (MQ=255)                                                                                     ctcaacaccaccgtcagacactaaatcagtaagttggcagcagcaccCAGTTTTCCCGTTTCTGCCAAACGGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTaaaacaaaa                     <  2:5787‑M2/96‑1 (MQ=255)                                                                                            acaccatcatacactaaatcagtaagttggcagcatcaccCAGTTTTCCCGTTTCTGCCAACCTGGGAGCCGAAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCCTCAAAACAAGACACCaaa              >  2:63475‑M2/41‑143 (MQ=255)                                                                                               ccatcatatactaattcagtaagttggcagcatcaccTAGTTTTCCCGTTTCTGCGAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATgg           <  2:270457‑M2/106‑1 (MQ=255)                                                                                                     tacactaaatcagtaagttggcagcatcaccCAGTTTTCCCGTTTCTGCCAACCTGGGAGCCGCAGCATTTTTCCTTGAGGAAATAATGGGTGTTAGAGCTGGCGTTATTGCCGCATTAAAACAAAACACAAAAAGGGACtat     >  1:178811‑M2/32‑143 (MQ=255)                                                                                                      acactaaatcagtaagttggcagcatcaccCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTCGAGCTGGCGTTCTTGCTACTTTAAAACCAAACACCAAATGGGACcata    >  2:284547‑M2/31‑143 (MQ=255)                                                                                                        actaaatcagtaagttggcagcatcaccCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAAACCAAACCCCAAGTGGGACTATAcc  >  2:4069‑M2/29‑143 (MQ=255)                                                                                                                                    |                                                                                                                   ATCGAAGCGAAATATCATCTTAATGATCCGATCATGACACAGTATTTCAGCTACCTGAAACAACTGGCGCACGGTGATTTCGGTCCATCGTTTAAATATAAAGATTATTCGGTCAATGACTTGGTTGCATCCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACC  >  NC_000913/1303043‑1303288

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.