| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,909,312 | Δ774 bp | [pstA]–[pstC] | [pstA], [pstC] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3909312 | 3910085 | 774 | 36 [0] | [0] 35 | [pstA]–[pstC] | [pstA],[pstC] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3909311 | 0 (0.000) | 30 (0.660) | 29/268 | 0.6 | 100% | coding (129/891 nt) | pstA | phosphate ABC transporter permease |
| ? | NC_000913 | 3910086 = | 0 (0.000) | coding (313/960 nt) | pstC | phosphate ABC transporter permease | |||||
AAATTAACAGCCCGCTACCCGCCAGAGCGTTCGCCAGACCACCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGAACAGGCCGAAGGCCATCGTCGCCATCGAGAGCGTCAGCGCAATACGGTTTTTGAGGCGGCGACGCGCCTGCATTTTGCGGCGAGATTCAGCCAGCGCCGCAGTGGTTTGCATTTCAACCATAGCCATTAGCGTGCCCCCT > NC_000913/3909169‑3909452 | aaaGTAGCAGCCCGCTGCCCGCCAGAGCGGTCGCCAGACCACCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAG < 2:286023‑M1/143‑1 (MQ=255) aaTTAACAGCCCGCTACCCGCCAGAGCGTTCGCCAGACCACCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGg > 1:426694‑M1/1‑142 (MQ=255) aTTAACAGCCCGCTACCCGCCAGAGCGTTCGCCAGACCACCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgc < 2:371994‑M1/143‑3 (MQ=255) gCCCGCTACCCGCCAGTGCTTTCGCCAGTCCCCCACCGTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCTATACCGCGAGTGATGGTGTACATTAAAATCCAGATCAGCCAGgcgcaagct < 2:155434‑M1/143‑10 (MQ=255) cGCTACCCGCCAGAGCGTTCGCCAGACCACCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACGGCGAGCGATGGTGGACAGTAAAATCCAGATCAGCCAGgcgcaagcgcag > 2:218705‑M1/1‑131 (MQ=255) ccGCCAGAGCGTTCGCCAGACCACCACCTTCCGTCTTGGGCGGCGGCGCCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGCGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcacgcgcagtcacga > 2:192678‑M1/1‑125 (MQ=255) cGCCAGAGCGTTCGCCAGACCACCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCAAGATCAGCCAGacgcaagctcagtcaggaa > 2:544857‑M1/1‑124 (MQ=255) ttCGCCAGACCACCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAGCAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACCTTAAAATCCAGATCAGCCAGgctcaagctcagtcaggaacagggcgata > 1:460909‑M1/1‑114 (MQ=255) cAGACCACCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGCACAGCGCCAGCGACATACGGTCGATACCGCGAGTGATGGTGGACATTAAGATCCAGATCAGCCAGgcgagagatcagtccggagcagggacatgccgaa > 2:246196‑M1/1‑109 (MQ=255) ccaccTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcacc < 1:351291‑M1/143‑42 (MQ=255) cggctTCATTTCACTGAAACGGGCCAGCGACATACCGTCTATACCGCGAGTGATGGTGGACATTAAAAGCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgc < 2:59259‑M1/143‑62 (MQ=255) gTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgatcacgaaactcaccgggacggcgatcagcagcgcgata > 2:29419‑M1/1‑78 (MQ=255) tGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgatacacgaaggca > 1:485751‑M1/1‑68 (MQ=255) aaCAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGCTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgctaaacgaagtcacc > 2:703554‑M1/1‑66 (MQ=255) aGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTCAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgcgacggcgatcagcagcgcgatacacgaagtcaccaac > 2:67313‑M1/1‑63 (MQ=255) gcgcCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacg > 2:451694‑M1/1‑62 (MQ=255) gACACACCGTCGATACCGCGAGTGAGGGTGGACAGTAAAATCCAGATCAGCCAGgcgcaagcgcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtaccgtag < 1:53806‑M1/143‑90 (MQ=255) aTACCGTCGATCCCGCGAGTCATCGTGCACATCAAAATCCAGTTTTGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtaccgtagatc < 1:30115‑M1/143‑93 (MQ=255) gTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtaccgtagatcggcac > 1:2916‑M1/1‑46 (MQ=255) aTACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgaccagcagcgcgataaacgcagaccccaacgtaccgcacaacggcaccagc > 2:246177‑M1/1‑42 (MQ=255) cgcgAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccgacgtaccgtagatcggcaccagcgccc > 2:221364‑M1/1‑38 (MQ=255) cgAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtaccgtagatcggcaccagcggcccg > 1:264819‑M1/1‑36 (MQ=255) cagcgatggTGCACATCAAAACCCGGACCAGCCCGgcgcaagctcagccaggaacagggcgataccgatcctcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtaccgtagatcggcaccagcgccccgt < 2:193072‑M1/139‑109 (MQ=255) tGATGGTGGACGTGAAAATCCAGAGCGGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgagcagcagcgcgataaacgaagtcaccaacgtaccgtagatcggcaccagcgccccgtaga < 2:798515‑M1/143‑112 (MQ=255) gtggACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtaccgtagatcggcaccagcgccccgtagatatcg < 1:719922‑M1/143‑117 (MQ=255) ggACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagtgcgataccgcaactcaccaagacagcaaacagcagcgcgataaacgaagtcaccaacgtaccgtagatcggcacaagcgacccgtagatatcgtt > 1:53882‑M1/1‑25 (MQ=255) aCATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtaccgtagatcggcaccagcgccccgtagatatcgttcg > 1:261887‑M1/1‑23 (MQ=255) aTTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtaccgtagatcggcaccagcgccccgtagatatcgttcggt > 1:635918‑M1/1‑21 (MQ=255) ccAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaccgtacaatagaacggcaccagagccccgtagataacgcccgatgcagccca > 2:374556‑M1/1‑13 (MQ=255) aGATCAGCCGGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtaccgtagatcggcaccagcgccccgtagatatcgttcggtgcatcccact < 2:347780‑M1/143‑133 (MQ=255) aGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtaccgtagatcggcaccagcgccccgtagatatcgttcggtgcatcccact < 1:680798‑M1/143‑133 (MQ=255) gggcaggcgcaagctcagtcaggaacagggcgataccgaaacgcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtaccgtagatcggcaccagcgccccgtagatatcgttcggtgcatcccactctttg < 1:726569‑M1/140‑138 (MQ=255) aGCCAGgcgcggcctcagccgcgagcagggcgataccgaaactccccgggacggcgatcagcagcgcgataaactaagtcaccaacgcaccgtagatcggcaccagcgccccgtagatatcgttcggtgcatcccactctttg < 2:489884‑M1/143‑138 (MQ=255) ccAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagtagcgcgataaacgaagtcaccaacgtaccgtagatcggcaccagcgccccggagatatcgttcggtgcatcccacgctttggt > 1:722244‑M1/1‑4 (MQ=255) cAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtaccgtagatcggcaccagcgccccgtagatatcgttcggtgcatcccacgctttggtc > 1:510154‑M1/1‑3 (MQ=255) aGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtaccgtagatcggcaccagcgccccgtagatatcgttcggtgcatcccactctttggtcc > 1:359375‑M1/1‑2 (MQ=255) | AAATTAACAGCCCGCTACCCGCCAGAGCGTTCGCCAGACCACCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGAACAGGCCGAAGGCCATCGTCGCCATCGAGAGCGTCAGCGCAATACGGTTTTTGAGGCGGCGACGCGCCTGCATTTTGCGGCGAGATTCAGCCAGCGCCGCAGTGGTTTGCATTTCAACCATAGCCATTAGCGTGCCCCCT > NC_000913/3909169‑3909452 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |