| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,909,312 | Δ774 bp | [pstA]–[pstC] | [pstA], [pstC] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3909312 | 3910085 | 774 | 36 [0] | [0] 35 | [pstA]–[pstC] | [pstA],[pstC] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3909311 | 0 (0.000) | 30 (0.660) | 29/268 | 0.6 | 100% | coding (129/891 nt) | pstA | phosphate ABC transporter permease |
| ? | NC_000913 | 3910086 = | 0 (0.000) | coding (313/960 nt) | pstC | phosphate ABC transporter permease | |||||
GACATGATATTGCCGACCGGCTCCTGAAAGTAAACGGCGAACAGCGGCGCAAAGATAAACAGGCCCCACATGCCGTAAACGATACTTGGAATGGCTGCCAGCAGCTCAATGGCGATACCCAGCGGGCGTTTCAGCCAGCCAGGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGATATCGTTCGGTGCATCCCACTCTTTGGTCC > NC_000913/3909944‑3910226 | aattaacagcccgctacccgccagagcgttcgccagaccaccaccttccgtattgggcggcggcgtcatttcagtgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagg > 1:426694‑M2/143‑143 (MQ=255) attaacagcccgctacccgccagagcgttcgccagaccaccaccttccgtattgggcggcggcgtcatttcagtgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccaggc < 2:371994‑M2/2‑1 (MQ=255) gcccgctacccgccagtgctttcgccagtcccccaccgtccgtattgggcggcggcgtcatttcagtgaacagcgccagcgacataccgtctataccgcgagtgatggtgtacattaaaatccagatcagccagGCGCAAGCt < 2:155434‑M2/9‑1 (MQ=255) cgctacccgccagagcgttcgccagaccaccaccttccgtattgggcggcggcgtcatttcagtgaacagcgccagcgacataccgtcgatacggcgagcgatggtggacagtaaaatccagatcagccagGCGCAAGCgcag > 2:218705‑M2/132‑143 (MQ=255) ccgccagagcgttcgccagaccaccaccttccgtcttgggcggcggcgccatttcagtgaacagcgccagcgacataccgtcgataccgcgcgtgatggtggacattaaaatccagatcagccagGCGCACGCGCAGTCACGa > 2:192678‑M2/126‑143 (MQ=255) cgccagagcgttcgccagaccaccaccttccgtattgggcggcggcgtcatttcagtgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatcaagatcagccagACGCAAGCTCAGTCAGGaa > 2:544857‑M2/125‑143 (MQ=255) ttcgccagaccaccaccttccgtattgggcggcggcgtcatttcagtgagcagcgccagcgacataccgtcgataccgcgagtgatggtggaccttaaaatccagatcagccagGCTCAAGCTCAGTCAGGAACAGGGCGATa > 1:460909‑M2/115‑143 (MQ=255) cagaccaccaccttccgtattgggcggcggcgtcatttcagtgcacagcgccagcgacatacggtcgataccgcgagtgatggtggacattaagatccagatcagccagGCGAGAGATCAGTCCGGAGCAGGGACATGCCGaa > 2:246196‑M2/110‑143 (MQ=255) ccaccttccgtattgggcggcggcgtcatttcagtgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCAcc < 1:351291‑M2/41‑1 (MQ=255) cggcttcatttcactgaaacgggccagcgacataccgtctataccgcgagtgatggtggacattaaaagccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAgcgc < 2:59259‑M2/61‑1 (MQ=255) gtcatttcagtgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATCACGAAACTCACCGGGACGGCGATCAGCAGCGCGATa > 2:29419‑M2/79‑143 (MQ=255) tgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATACACGAAGGCa > 1:485751‑M2/69‑143 (MQ=255) aacagcgccagcgacataccgtcgataccgcgagtgatgctggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGCTAAACGAAGTCAcc > 2:703554‑M2/67‑143 (MQ=255) agcgccagcgacataccgtcgataccgcgagtgatggtggacattcaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGCGACGGCGATCAGCAGCGCGATACACGAAGTCACCAAc > 2:67313‑M2/64‑143 (MQ=255) gcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACg > 2:451694‑M2/63‑143 (MQ=255) gacacaccgtcgataccgcgagtgagggtggacagtaaaatccagatcagccagGCGCAAGCGCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAg < 1:53806‑M2/89‑1 (MQ=255) ataccgtcgatcccgcgagtcatcgtgcacatcaaaatccagttttgccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATc < 1:30115‑M2/92‑1 (MQ=255) gtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCAc > 1:2916‑M2/47‑143 (MQ=255) ataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGACCAGCAGCGCGATAAACGCAGACCCCAACGTACCGCACAACGGCACCAgc > 2:246177‑M2/43‑143 (MQ=255) cgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCGACGTACCGTAGATCGGCACCAGCGccc > 2:221364‑M2/39‑143 (MQ=255) cgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGGCCCg > 1:264819‑M2/37‑143 (MQ=255) cagcgatggtgcacatcaaaacccggaccagcccgGCGCAAGCTCAGCCAGGAACAGGGCGATACCGATCCTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGt < 2:193072‑M2/108‑1 (MQ=255) tgatggtggacgtgaaaatccagagcggccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGAGCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGa < 2:798515‑M2/111‑1 (MQ=255) gtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGATATCg < 1:719922‑M2/116‑1 (MQ=255) ggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGTGCGATACCGCAACTCACCAAGACAGCAAACAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACAAGCGACCCGTAGATATCGtt > 1:53882‑M2/26‑143 (MQ=255) acattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGATATCGTTCg > 1:261887‑M2/24‑143 (MQ=255) attaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGATATCGTTCGGt > 1:635918‑M2/22‑143 (MQ=255) ccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCACCGTACAATAGAACGGCACCAGAGCCCCGTAGATAACGCCCGATGCAGCCCa > 2:374556‑M2/14‑143 (MQ=255) agatcagccggGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGATATCGTTCGGTGCATCCCAct < 2:347780‑M2/132‑1 (MQ=255) agatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGATATCGTTCGGTGCATCCCAct < 1:680798‑M2/132‑1 (MQ=255) gggcagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACGCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGATATCGTTCGGTGCATCCCACTCTTTg < 1:726569‑M2/137‑1 (MQ=255) agccagGCGCGGCCTCAGCCGCGAGCAGGGCGATACCGAAACTCCCCGGGACGGCGATCAGCAGCGCGATAAACTAAGTCACCAACGCACCGTAGATCGGCACCAGCGCCCCGTAGATATCGTTCGGTGCATCCCACTCTTTg < 2:489884‑M2/137‑1 (MQ=255) ccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGTAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGGAGATATCGTTCGGTGCATCCCACGCTTTGGt > 1:722244‑M2/5‑143 (MQ=255) cagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGATATCGTTCGGTGCATCCCACGCTTTGGTc > 1:510154‑M2/4‑143 (MQ=255) agGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGATATCGTTCGGTGCATCCCACTCTTTGGTcc > 1:359375‑M2/3‑143 (MQ=255) | GACATGATATTGCCGACCGGCTCCTGAAAGTAAACGGCGAACAGCGGCGCAAAGATAAACAGGCCCCACATGCCGTAAACGATACTTGGAATGGCTGCCAGCAGCTCAATGGCGATACCCAGCGGGCGTTTCAGCCAGCCAGGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGATATCGTTCGGTGCATCCCACTCTTTGGTCC > NC_000913/3909944‑3910226 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |