New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1207805	53 (0.830)	13 (0.230)	11/252	4.9	20.8%	coding (305/630 nt)	stfP	e14 prophage, uncharacterized protein
	?	NC_000913	= 1209602	52 (0.910)					pseudogene (18/501 nt)	stfE	pseudogene, e14 prophage, side tail fiber protein fragment family,Phage or Prophage Related
Rejected: Coverage evenness skew score above cutoff.

GTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGA‑TTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGA  >  NC_000913/1207664‑1207943                                                                                                                                              |                                                                                                                                            gTGCCAGCCTGGAGACGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTTCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGa                                                                                                                                            <  2:54706/143‑1 (MQ=255)   gCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGATACCCCTGGTTTGGGAGAAggctc                                                                                                                                          >  2:113354/1‑140 (MQ=255)    ccAGCCTGGAGAAGGGGTGGCACGACCAGTCACTTACCTCACTTCGCGCGCTGCTGTTAAGCCGCAAGAAGCCGGTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAggctct                                                                                                                                         <  1:167334/143‑5 (MQ=17)       gCCTGGAGAGGGGGCGGCACGACCAGTTACTTACCGCACGGCGCGCGCTGCTGTGAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCaaaa                                                                                                                                      <  1:261897/143‑1 (MQ=255)        ccTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGACGGAGCAAAAc                                                                                                                                     >  2:154214/1‑143 (MQ=255)          tGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTc                                                                                                                                   >  2:220492/1‑143 (MQ=255)           ggagggggggCGGCACGACCAGTTACGTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCa                                                                                                                                  <  1:305289/137‑1 (MQ=255)                   ggcggcACGACCAGTTACGTGCCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAAGCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATgcagca                                                                                                                          <  1:742048/143‑1 (MQ=255)                    gcggcACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGACTCCGTTTGGCGATATCAGATCGGATGGCGCTGTGGAAACGGCTCTGGGAGACCTAGGTTTGGGAGAAGGAGCAGAAGTCAGTCCGGCaa                                                                                                                         >  1:345087/1‑143 (MQ=18)                    gcggcACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTCGCGATATCAAATCGGATGGCACTATGCAAACGGCTCTCGAAAACATTGGATTCGGAGAAGGAGCAACACGCAATGCAGCaa                                                                                                                         >  1:33426/1‑143 (MQ=21)                         aCGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTATCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCACTGCAGCAACGGCt                                                                                                                    >  2:585395/1‑143 (MQ=255)                            aCCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACa                                                                                                                 <  2:844306/143‑1 (MQ=255)                             ccAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACAt                                                                                                                >  2:175715/1‑143 (MQ=255)                                   acttacCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGAc                                                                                                          <  2:391243/143‑1 (MQ=255)                                     ttacCGTACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGAGGGCACTGTGCAAACGGCTCTCGAAAACCTTGGATTGGGAGAAGGCGCAAAACTCAATGCAGCAACGGCTACAAGCGGACGc                                                                                                        >  2:929176/1‑143 (MQ=18)                                     ttacCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCCTGGGTTGGGAGAAGGAGCAAAACTCAGTGCAGCAACAGCTACCTCAGGACga                                                                                                        >  1:827790/1‑142 (MQ=21)                                         cGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCGCAAACCTCAATGCAGCAACGGCTACATTAGGACGCACCg                                                                                                    >  2:485076/1‑143 (MQ=255)                                            gcTTCGCGCGCTGCGGTTAAGCCGCAAGAAGCCGTTTGGCGATATCAAATCGGATGGCACGGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGtt                                                                                                 <  1:863835/142‑1 (MQ=255)                                                 gcgcgcTGCTGTAAAGCCGCAAGATGCGGTTTGGCGAGATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATa                                                                                            <  1:906847/143‑1 (MQ=25)                                                  cgcgcTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCTTATCTGATGGCACTGTGCAAACGGCTCTCGAAAACCGGGGTGGGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAg                                                                                           <  2:621511/143‑1 (MQ=25)                                                   gcgcTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGAATGGCACTGAGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATCAGGACGCACCggacggatagc                                                                                          >  1:84943/1‑134 (MQ=21)                                                            ttAAGCCGCAAGAACCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCCCTCGAAAACCTTGGTTCGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGt                                                                                 <  2:661021/143‑1 (MQ=255)                                                               cgCCGCAAGCATCCGTTTGGCGATATCCAATCGGATGGCACTGTGCAAATGGCTCTCGAAAACCATGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTAt                                                                              <  1:904759/142‑1 (MQ=255)                                                                 ccGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGa                                                                            >  2:745219/1‑143 (MQ=255)                                                                  cgggagagTCCGTTTGGCGATATCAAATGGGATGGCACTGTGCAAACAGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGGACCGGTTTCATAGCTATACCGGTTATGA‑t                                                                          <  1:286642/139‑1 (MQ=37)                                                                     aaGACTCCGTTTGGCGACAGCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGA‑Ttgg                                                                       <  2:780330/143‑1 (MQ=255)                                                                       gAATCCGTTTCGCGATATCGAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGA‑Ttggtg                                                                     <  1:1050728/143‑1 (MQ=255)                                                                            cGTGTGGCGATATCAAATCGGATGGCACGGGGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAAGGCAGCAACGGCTACATTAGGACGTTCCTGTTTCAGAGCTATACCGGTTATGA‑TTGGTGGTAtt                                                                <  2:1065983/143‑1 (MQ=37)                                                                             gTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGG‑TTGGTGGTGTTg                                                               >  2:218827/1‑143 (MQ=255)                                                                               ttGGCGATATCAAAACGGAGGGCACGGTGCAAACGGCTCTCGAAAACCGTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGA‑TTGGTGGTATTGAg                                                             <  2:199741/143‑1 (MQ=255)                                                                                  gCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGA‑TTGGTGGTATTGAGCaa                                                          >  2:556468/1‑143 (MQ=255)                                                                                  gCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGA‑TTGGTGGGATTGGGCag                                                          >  2:162665/1‑142 (MQ=255)                                                                                   cGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGA‑TTGGTGGTATTGAGCAAt                                                         <  2:958444/143‑1 (MQ=255)                                                                                   cGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGA‑TTGGTGGTATTGAGCAAt                                                         <  2:741904/143‑1 (MQ=255)                                                                                    gATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACATTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGA‑TTGGTGGTATTGAGAAAta                                                        >  2:569093/1‑142 (MQ=255)                                                                                    gATATCAAATCGGATGGCACTGTGCAAACGACTCTCGAAACCCTTGCTTTGGGAGAAGGAGCAAAACACAATGCAGCAACGGCTACATTAGGACGCACCGGCTGCATAGCTATACCGGTTATGA‑TTGTTGGTATTGAGCAATc                                                        >  1:449011/1‑143 (MQ=255)                                                                                         cAAATCTGATGGCACTGTGCAAACGGCTCTCGAAAACCGTGGTTGGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGA‑TTGGTGGTATTGAGCAATCAGTaa                                                   <  2:835068/143‑1 (MQ=255)                                                                                           aaTCGGATGGCACTGTGCAAACGGCTCTCGAAAACATTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACAGTAGGACGCACCGGTTTCATAGCTATACCGGTTATGA‑TGGGTGGGATTGGGCAATCAGTAATc                                                 >  1:283522/1‑143 (MQ=255)                                                                                             tCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGA‑TTGGGGGACATGAGCAATCAGTAATCAt                                               >  1:832873/1‑143 (MQ=255)                                                                                                  tGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGGTTAATAGCTATACCGTTTATGG‑TTGGTGGTATTGAGCAATCAGTAATCATTCAGt                                          >  2:697535/1‑143 (MQ=255)                                                                                                      aCTGTGCAAACGGCTCTCGAAACCCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGA‑TTGGTGGTATTGAGCAATCAGTAATCATTCAGTgggg                                      <  1:221925/143‑1 (MQ=255)                                                                                                         gtgCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTAGGA‑TTGGTGGTATTGAGCACGCAGCAATCATCCGGTggggggg                                   >  2:147446/1‑141 (MQ=255)                                                                                                            cAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGA‑TTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGaa                                <  2:303097/143‑1 (MQ=255)                                                                                                               ttcattttcctaaaCGTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGA‑TTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGc                             <  2:431919/132‑1 (MQ=255)                                                                                                                     tccataaaCGTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTAATAGCTATACCGGTTATGA‑TTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCaaa                       <  2:340582/138‑1 (MQ=255)                                                                                                                     ctcGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGA‑TTGGTGGTATTGAGCAATCAGTAATCATTCCGTGGGGGTGGAATGCCGCcaa                       >  1:769198/1‑143 (MQ=255)                                                                                                                      tcGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGA‑TTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCaaaa                      >  2:822299/1‑143 (MQ=255)                                                                                                                        gAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCCTAGCTATACCGGTTATGA‑TTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGc                    <  2:770054/143‑1 (MQ=255)                                                                                                                        ataaaCGTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGA‑ATGGTGGTATGGAGCCATCAGTAATCAGTCAGTGGGGGTGGAATGCTGCCAAAGc                    >  1:152445/3‑143 (MQ=255)                                                                                                                         aaaaCCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGA‑TTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCa                   >  2:975619/1‑143 (MQ=255)                                                                                                                         aaaaCCGTGGTTTGGGACAAGGAGCAAAACTCAATCCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATCCCCGTTATGATTTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGc                    <  2:158066/143‑1 (MQ=255)                                                                                                                                      gggAGAAGGAGCAAAACTCTCGGGTGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGA‑TTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTgggg      <  1:1023502/143‑1 (MQ=255)                                                                                                                                       ggAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGA‑TTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTggggg     <  1:877976/143‑1 (MQ=255)                                                                                                                                       ggAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGA‑TTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTggggg     <  2:938996/143‑1 (MQ=255)                                                                                                                                          gaAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGA‑TTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGTAATGCCGCAAAAGCATCTGCCTCTGGGGGGGa  <  2:610379/143‑1 (MQ=255)                                                                                                                                              |                                                                                                                                            GTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGA‑TTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGA  >  NC_000913/1207664‑1207943

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.