New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1207805	53 (0.830)	13 (0.230)	11/252	4.9	20.8%	coding (305/630 nt)	stfP	e14 prophage, uncharacterized protein
	?	NC_000913	= 1209602	52 (0.910)					pseudogene (18/501 nt)	stfE	pseudogene, e14 prophage, side tail fiber protein fragment family,Phage or Prophage Related
Rejected: Coverage evenness skew score above cutoff.

AATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGT  >  NC_000913/1209460‑1209741                                                                                                                                               |                                                                                                                                            aaTCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGACCCGGGACACCAACAGGTACTGCagag                                                                                                                                             >  1:571591/1‑143 (MQ=255)  aTCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGc                                                                                                                                            <  2:888024/143‑1 (MQ=255)   tgagcagatttgtttGTCGGATAAGCCTTTGCCAGTTCCGGTTATTCTTCACCAGAAAAAGCGGCACCATTGCAGTTCATCCAGCCTGTTGTCTGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGTTAATTCAGAGcc                                                                                                                                           <  1:155934/136‑1 (MQ=255)         aaTTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAAGTAATGCAGAGCCTTCTcc                                                                                                                                     >  2:113075/1‑143 (MQ=255)                  gTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCaag                                                                                                                            >  2:635060/1‑142 (MQ=255)                   tCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAAACGGGACACCAACAGGTAATGCAGAGACTTCTCCCAAACCAACg                                                                                                                           >  2:160912/1‑143 (MQ=255)                     ggagcaGCCTGTGCAAGTTCCGGGTATTCTTCAGCAGTCAAAGAGGCACAATTCCCTTTCAGCCAGCATGTTGGCGGAGTGGCTGAAGGCCACGGAAAAGGGATCCGCAAACGGCATGCAGAGCCTTCTCCCAAACCAACGtt                                                                                                                         <  1:850077/138‑1 (MQ=255)                         aaGCCTGTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGCCCCAAATAGGTTATGCAGAGCCTTCTCCCAAACCAACGTTTATg                                                                                                                     <  2:1066783/143‑1 (MQ=255)                          aGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCAGAGTGGCTGAAGGCACCGGAACCGGGACACCAACAAGTAATGCAGAGCCTCATCCCAAACCAAccaataaga                                                                                                                    >  1:405342/1‑135 (MQ=255)                            ccTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGaaa                                                                                                                  >  1:829302/1‑143 (MQ=255)                              tttGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCGAACCAAGGttttcgagcgc                                                                                                                >  2:1037164/1‑135 (MQ=255)                                 gCCCGTTCCTGTTATTCTTCAGCAGAGAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATgaa                                                                                                             <  1:987378/143‑1 (MQ=255)                                 gCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACACGTAGTGCAGCGCCTACGCCCAGACCAAGGtcctcgacacccgc                                                                                                             >  1:5659/1‑130 (MQ=255)                                 gCCAGTGCCGGGTATGCTTGAGCAGAAAAAGCGGCACCAGTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATgaa                                                                                                             <  1:990403/143‑1 (MQ=255)                                        ccGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATaa                                                                                                      >  2:999520/1‑143 (MQ=255)                                          gcgTATTCTGCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGTAGGCCACTGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACa                                                                                                    <  2:187085/141‑1 (MQ=255)                                                  ttcAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGCAGAAATAACAAGCaaacg                                                                                            >  2:1120506/1‑141 (MQ=255)                                                       cagAAAAAGCCGCAGCATCGCATATCAGCCAGCCTGGTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACAACAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGcatc                                                                                       <  2:21439/143‑1 (MQ=255)                                                         gAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGCCCACGGAACCGGGACGCCGACAGGTACTGCAGAGCCTGCTCCCAAACCAACGTCTATGAAAATGAAGAAAGAACAAGGAAATCGcatcag                                                                                     >  1:607208/1‑142 (MQ=255)                                                          aaaaaGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGcctcaat                                                                                    >  2:351282/1‑141 (MQ=255)                                                          aaaaaGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCAtt                                                                                    >  2:1097447/1‑143 (MQ=255)                                                            aaaGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAGACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGcatcagccc                                                                                  >  2:930182/1‑139 (MQ=255)                                                             acgCGGCACCTTCGCTTGTTATCCCGCCTGTTGGCGGAGTTGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCt                                                                                 <  1:528692/141‑1 (MQ=255)                                                              aGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCGACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTg                                                                                <  1:776401/143‑1 (MQ=255)                                                               gCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGc                                                                               <  2:974860/143‑1 (MQ=255)                                                                cGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCt                                                                              <  1:116371/143‑1 (MQ=255)                                                                   cACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCtttt                                                                           <  1:1086900/143‑1 (MQ=255)                                                                    aCCATTGCATTTCAGCCAGCCTGTTGGCGGCGTGGCTGAAGGCCACGGCACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTa                                                                          >  2:883097/1‑143 (MQ=255)                                                                        ttGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCCAACCAACGCGTACGAACATGAAGAAATAACACGCAAATGGCATCACGCCTGCTTATACCAg                                                                      >  1:961447/1‑143 (MQ=255)                                                                             tttCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGa                                                                 >  2:1022306/1‑143 (MQ=255)                                                                                tggccggggggggggCGGAGTGGCGGAAGGCCAGGGAACCGGGACACCAAGAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAAGAACAAGCAAATGGCATCATTCCTGGTTTTACCAGGGGGAttg                                                              <  2:407642/130‑2 (MQ=255)                                                                                   ccagccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGCACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCAGCATTCCTGCTTTTACCAGGGGGATTTAAc                                                           >  1:512386/1‑143 (MQ=255)                                                                                     agcgTGTTGGCGGAGGGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACAt                                                         <  2:1015997/143‑1 (MQ=255)                                                                                       ccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGc                                                       <  2:302620/143‑1 (MQ=255)                                                                                        cTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTGAACATGcg                                                      >  1:696374/1‑142 (MQ=255)                                                                                              gCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTgg                                                <  2:829302/143‑1 (MQ=255)                                                                                                   gTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGcc                                                                                                                                           <  2:713766/47‑1 (MQ=255)                                                                                                   gTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGcc                                                                                                                                           >  1:713766/1‑47 (MQ=255)                                                                                                        tGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTACGGATATGCAGAGATAAAAGGAAAAACATCTCGCTCCGTCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTAcgc                                      <  2:1116522/143‑1 (MQ=255)                                                                                                        tGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGCTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAGCATGCTTATAGGCTATCTAcgc                                      >  2:429794/1‑143 (MQ=255)                                                                                                         gAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTAcgcg                                     >  2:790947/1‑143 (MQ=255)                                                                                                          agggCCACGGAGCCGGGAGACCAACAGGTAATGCAGAGCCTTCTCCCAGACCAACGTTTATGAAAATGAAGAAGTGACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGt                                    <  1:1120506/141‑1 (MQ=255)                                                                                                               gcggcgaCCGGGACAGCAACAGGTAATGCAGAGCTTTCTCCCCAAGCAACGTTGATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATcaa                               <  1:484138/137‑1 (MQ=255)                                                                                                               cACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATg                                           >  1:1048874/1‑131 (MQ=255)                                                                                                               cACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATg                                           <  2:1048874/131‑1 (MQ=255)                                                                                                                  ggAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGCTTTAACATGCTTATTGGCTATGTACTCGTATcaacaa                            >  2:951548/1‑143 (MQ=255)                                                                                                                  ggAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAAGGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTTTTGGCTATGTAGGCGTATcaacaa                            >  2:209033/1‑143 (MQ=255)                                                                                                                       cGGGACACAAACAGGTAATGCAGAGACTTCTCCCAAACCAACGATTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCATGCTTTTACTAGGGGGATTTAACATGCTTATTGGGTTTGTACGCGTATCAACAGATGAc                       >  2:1029777/1‑143 (MQ=255)                                                                                                                        gggACCCCAACAGGGAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGAcc                      <  2:1056782/143‑1 (MQ=255)                                                                                                                            cacCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATAGCATCATTCTTACTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACTAATGACCAGaa                  >  1:908658/1‑143 (MQ=255)                                                                                                                                aaCAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCCACAAATGACCAGAGcaca              >  2:670148/1‑143 (MQ=255)                                                                                                                                aaCAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAAcaca              >  2:829724/1‑143 (MQ=255)                                                                                                                                   aGGTAATGCAGAGCTTTCTCACAAACCAACGTGTATGAAAATGATGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGAt           <  1:3932/143‑1 (MQ=255)                                                                                                                                   aGGTAATGCAGAGCCTTCTCCGAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGAt           <  1:244155/143‑1 (MQ=255)                                                                                                                                   aGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGAt           >  2:662302/1‑143 (MQ=255)                                                                                                                                     gTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCt         >  2:886118/1‑143 (MQ=255)                                                                                                                                       aaTGCAGAGCCTTCTCCCAAACCGACGTTTATTAAAATTAAGAGATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTAc       <  1:457143/143‑1 (MQ=255)                                                                                                                                         tGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATACACAAATGACCAGAACAGAGATCGACaa     >  1:477778/1‑143 (MQ=255)                                                                                                                                          gCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCAGCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCCACAAATGACCAGAACACAGATCTACAAc    >  1:556394/1‑143 (MQ=255)                                                                                                                                           cAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACg   >  2:14754/1‑143 (MQ=255)                                                                                                                                            agagCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAACCAAATCGCGTCACTCCAGCTATTAAAAGGTGGATTTAACATGCTTATTGCCTATGTACGCGTATCAACAAATGACCGGAACGCAGCTCTACAACgc  >  1:236096/1‑142 (MQ=255)                                                                                                                                               |                                                                                                                                            AATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGT  >  NC_000913/1209460‑1209741

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.