| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | NC_000913 | 4,001,644 | Δ5 bp | coding (220‑224/951 nt) | corA → | magnesium/nickel/cobalt transporter |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4001643 | 1 (0.020) | 47 (0.890) | 39/284 | 0.3 | 97.9% | coding (219/951 nt) | corA | magnesium/nickel/cobalt transporter |
| ? | NC_000913 | 4001649 = | 1 (0.020) | coding (225/951 nt) | corA | magnesium/nickel/cobalt transporter | |||||
GTATGGATTGATCTTGTCGAACCGGACGACGACGAGCGACTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATATTCACTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGATGGTCGTCTGTTTACTCTGCGTGAGCGTGAACTGCCCGCTTTTCGTCTGTATCGTATGCG > NC_000913/4001503‑4001777 | gTATGGATTGATCTTGTCGAACCGGACGACGACGAGCGACTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGGTTCTTTGAAGACGACGACGGCCTGCCTct > 2:439767‑M1/1‑141 (MQ=255) aTGGATTGATCTTGTCGAACCGGACGACGACGAGCGACTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctcc < 2:100500‑M1/143‑5 (MQ=255) ggATTGATCTTGGCGAACCGGACGACGACGAGCGACTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctcctt < 2:274519‑M1/143‑7 (MQ=255) aTTGATCTTGTCGAACCGGACGACGACGAGCGACTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttct < 1:871038‑M1/143‑9 (MQ=255) cgaTCTGGTCGAACCGGACGACGACGAGCGACTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTGTCTTTGAAGACGACGACGGCCTGCATctccttcttc < 1:295614‑M1/142‑11 (MQ=255) aTCTTGTCGAACCGGACGACTACGAGCGACTGCGCGCACAATCTGACCTTGGTCAGAGCCTGGCAACCCGCCCGGTACTGCAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttctt < 2:126599‑M1/143‑13 (MQ=255) aTCTTGTCGAACCGGACGACGACGAGCGACTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCCTctccttcttctt > 1:375489‑M1/1‑131 (MQ=255) ttGTCGAACCGGACGACGACGAGCGACTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctt > 2:845575‑M1/1‑128 (MQ=255) gTCGAAGCGGAAGACGAGGCGCGTCTGCGCGGTCCGTCTGAAGTTGACTGGGGCCTGGCACTACGCCCGGACCTGGCAGACCTGGAAGCATCGGCACGTTTCTTTGAAGCCGACATCGGCCTGCAT‑‑‑‑‑CTCCTTCTTCTTCTTTg < 1:324328/143‑1 (MQ=255) cGGACGACGACGAGCGACTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgc > 1:88710‑M1/1‑119 (MQ=255) cGGACCACGACGAGCGACCGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgc < 2:100912‑M1/143‑25 (MQ=255) acgacgacgAGCGACTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcgga < 2:90966‑M1/143‑28 (MQ=255) gacgacgaGCGACTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGGCATCGAAGCATGGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggtag > 2:395422‑M1/1‑114 (MQ=255) cgaGCGACTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGTCGTCGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcac < 2:496371‑M1/143‑35 (MQ=255) gcgTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGGTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaccgc > 2:504686‑M1/1‑98 (MQ=255) cgTACAATCCGAACTTGGCCACAGCCTGGCAACCCGCCCGGAACCGGAAGACATCGACGCATCGGCACGTTGCTCTGAAGACTACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactcc < 2:795749‑M1/143‑47 (MQ=255) actctGAACCTCGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGTCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgt < 1:724880‑M1/141‑52 (MQ=255) cgcggaacgTGGGCAGAGCCTGGCAACCCTTCCGGAACTGGAAGACATCGAAGCATCGGCACGGTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactcccctgtg < 1:663112‑M1/139‑53 (MQ=255) aTCGGAACTCTGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGCCATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtg < 2:541962‑M1/143‑53 (MQ=255) gtgAGCTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggc < 1:607012‑M1/142‑55 (MQ=255) tGAACTTGGCCCGAGCCTGGCAAGGTGTATGATAGTTGAAAACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaacgccactgtggca > 1:653684‑M1/1‑88 (MQ=255) tGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggca > 2:677794‑M1/1‑88 (MQ=255) ttGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGGTGCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttac > 2:637322‑M1/1‑83 (MQ=255) gagCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCACctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgc > 1:743438‑M1/1‑76 (MQ=255) gcccgGAACTGGAAGACATCGCAGCATCGGCACGTTTCTTTGACGATGACGAGGTTCTTCATcttcttcttcttctttgaagaggcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctgtt < 2:663842‑M1/143‑82 (MQ=255) gAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctgtttactctgcgtg > 2:874556‑M1/1‑51 (MQ=255) aaGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatcggtgatggtcgtctgtttactctgcgtgg > 2:842248‑M1/1‑50 (MQ=255) aGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctgtttactctgcgtgag > 2:431710‑M1/1‑49 (MQ=255) aGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctgtttactctgcgtgag > 1:467181‑M1/1‑49 (MQ=255) aTCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctgtttactctgcgtgcgcgtg > 1:623549‑M1/1‑45 (MQ=255) aTCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctgtttactctgcgtgagcgtg < 2:600246‑M1/143‑99 (MQ=255) aTCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctgttgactctgcgtgagcgtg > 2:26508‑M1/1‑45 (MQ=255) aTCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaacgccaccgtggcatttaccatccgtgatggtcgtctgtttactacgagtccgcggg > 1:97931‑M1/1‑45 (MQ=255) cGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccctctgcttctttgaagatgcggaagatcacgccggtaactccactggggcatttaccatccgtgatggtcgtctgtttactctgcgtgagcgtgaa < 2:45346‑M1/143‑101 (MQ=255) cGGCACGTTGCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctgtttactctgcgtgagcgtgaactgcccgc < 2:54799‑M1/143‑109 (MQ=255) gCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctgtttactctgcgtgagcgtgaactgcccgctt > 2:435080‑M1/1‑33 (MQ=255) cACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagctcacgccggtcactccactgtggcatttaccatccgtgatgcccgtctgtttactccgcgtgaccgtcacccgcccgcttt > 1:417155‑M1/1‑32 (MQ=255) cGTTTCTTTGAAGACTACGCCGGTCTGCGTcgccttcttcttctttgaagatgcggaagatcacgccggtaagtccactgtggcatttaccatccgtgatggtcgtctgtttactctgcgtgagcgtgaactgcccgcttttc < 1:170814‑M1/143‑114 (MQ=255) cGTTTCTGTTAAGTCGCTGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctgtttactctgcgtgagcgtgaactgcccgcttttc < 1:867386‑M1/143‑114 (MQ=255) cttcTTTGATGACGACGACTGTCTGCATcttcttcttcttctttgaggttgcggaagatcacgtcggtaacttcactgtgtcatttgccatccgtggtggtcgtctgtttactctgcgtgagcgtgaactgcccgcttttcgt < 1:695443‑M1/142‑116 (MQ=255) tcgttgagGACGGCGGCTGCCTGCATccccttcttcttctttgaatatgcggaagatcacgccggtaactacactgtggcatttaccatccgtgatggtcgtctgtttactctgcgtgagcgtgaactgcccgcttttcgtct < 1:696363‑M1/140‑118 (MQ=255) tCTTTGGAGACGACGACGGCCTGCCTcgccttgttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctgtttactctgcgtgagcgtgaactgcccgcttttcgtct < 2:153374‑M1/143‑118 (MQ=255) ttGAAGACGACGACGGCCTGCCTctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctgtttactctgcgtgagcgtgaactgcccgcttttcgtctgta < 1:287557‑M1/143‑121 (MQ=255) aaGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctgtttactctgcgtgagcgtgaactgcccgcttttcgtctgtatcg < 2:323781‑M1/143‑124 (MQ=255) gcgacggcggCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctgtttactctgcgtgagcgtgaactgcccgcttttcgtctgtatcgtat < 1:526938‑M1/142‑127 (MQ=255) gacgacgGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttacgataggtgatggtcgtctgtttactctgcgtgagcgtgaactgcccgcttttcgtctgtatagtatgc > 2:783410‑M1/1‑15 (MQ=255) acgGCCTGCATctccttcgtcttcgttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctgtttactctgcgtgagcgtgaactgcccgcttttcgtctgtatcgtatgcgtgc < 2:375489‑M1/143‑133 (MQ=255) ggCCTGCATcgcctccctcttcggtggagatgcggaagatcacgccggtaactccgctgtggcatggaccatccgtgatggtcgtctgttttctctgcgtgagcgttaactgcccgcttttcgtctgtatcgtatgcgtgccc < 2:175300‑M1/143‑135 (MQ=255) | GTATGGATTGATCTTGTCGAACCGGACGACGACGAGCGACTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATATTCACTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGATGGTCGTCTGTTTACTCTGCGTGAGCGTGAACTGCCCGCTTTTCGTCTGTATCGTATGCG > NC_000913/4001503‑4001777 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |