New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	458787 =	7 (0.130)	56 (1.080)	46/278	0.1	89.1%	intergenic (+87/‑101)	clpX/lon	ATPase and specificity subunit of ClpX‑ClpP ATP‑dependent serine protease/DNA‑binding ATP‑dependent protease La
	?	NC_000913	608011 =	NA (NA)					intergenic (+23/‑54)	hokE/insL1	toxic polypeptide, small/IS186 transposase

GTGCTGTGTTTAACGGTGCTGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGAT  >  NC_000913/607869‑608130                                                                                                                                               |                                                                                                                        gTGCTGTGTTGAACGGTGCTGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGCAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCTCa                                                                                                                         <  1:873753/143‑1 (MQ=255)  tGCTGTGTTTAACGGTGCTGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCAt                                                                                                                        >  2:7727/1‑143 (MQ=255)       tgtTTAACGGTGCTGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTCATCCCCTAAgag                                                                                                                   >  1:522019/1‑141 (MQ=255)         tttAACGGTGCTGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATACGACAAGCACt                                                                                                                 >  1:382425/1‑143 (MQ=255)           tacctgTGCTGGGATCTACGCTTCTGGTCGTAGACTCGCTGTGTGAGTTTGCGGTGAAGGAACGTAATATTGAGTGTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTaa                                                                                                               <  1:829519/138‑1 (MQ=255)           taccGGTTCTGGGATTTACGCTTCTGGTCGGAGCCTCGCTGTGTGCGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTaa                                                                                                               <  2:612848/140‑1 (MQ=255)             gtggTGCTGGGGTTTTCGCTTCTGGTCGGAGGCTCGCGTTGTGAGTTGACTGTGAAGTGACGTAATATTGAATTTAAGGCTGTGCTCGCTTACGAACCGAAGAAGTAGCTGTTGTGCGGGGAGTAATCCCATAAGCGCTAACt                                                                                                             <  1:890503/141‑1 (MQ=255)             aCGGTGCTGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACt                                                                                                             >  2:491210/1‑143 (MQ=255)                gTGCTGGGATTTACGCCTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTaa                                                                                                          <  2:137337/143‑1 (MQ=255)                gTGCCGGGCTTTCCCCTCCTGCTCGGAGACTCGCTGTGCGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTaa                                                                                                          <  2:791579/143‑1 (MQ=255)                  gCTGGGATTTACGCTGCTGGTCGGAGACTCGCTGTGTGAGTGTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAgg                                                                                                        <  2:602332/143‑1 (MQ=255)                    tGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGt                                                                                                      >  1:862136/1‑143 (MQ=255)                    tGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGGTGTGCGGGGAGCAATCCCATAAGCGCTAACTTCAGGGt                                                                                                      >  1:727549/1‑143 (MQ=255)                        aTTTACGCGTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTtgtg                                                                                                  <  2:728974/143‑1 (MQ=255)                         tttACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTgg                                                                                                 >  1:652027/1‑143 (MQ=255)                                     gTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGa                                                                                     <  2:33459/143‑1 (MQ=255)                                      tctgacaCTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAATGCTGTCCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTTat                                                                                    <  2:792758/137‑1 (MQ=39)                                        ggAGAATCGCGGTGTGAGTTTACGGTGAGGGAACGTAATAGTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGatat                                                                                  <  1:425251/143‑1 (MQ=255)                                           gagtCGCTGTGTGGGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGGTGTGCGCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGAt                                                                               <  1:94785/140‑1 (MQ=38)                                             cTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGACAGATATGAgtt                                                                             >  2:798746/1‑143 (MQ=255)                                                gCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAAc                                                                          >  2:344928/1‑143 (MQ=255)                                                gCTGTGTGAGTTTACGGGGAAGGAACGTAATCTTGAGTTTAAGGCTGTTCTCGCTTACGTACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAAc                                                                          <  1:320887/143‑1 (MQ=255)                                                       gggTTTACGGTGAAGGAACGTAATATTGAGTGTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGa                                                                   <  1:857789/141‑1 (MQ=255)                                                       gAGTTTACGGGGGAGGCGCGTAATGTTGAGTTTAGGGCTGTTCTCGCTTACGACCCGAAGGAGTAGCCGTTGGGCGGGGAGTAGTCCGATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGa                                                                   <  1:858071/143‑1 (MQ=21)                                                         gTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATg                                                                 >  2:474327/1‑143 (MQ=255)                                                          tttACGGTGAATGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGa                                                                <  1:208046/143‑1 (MQ=255)                                                            tACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAAt                                                              <  2:753994/143‑1 (MQ=255)                                                            gaCGGTGAAGGAACGTAATATTGAGTTTTAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAAt                                                              <  1:865779/142‑1 (MQ=255)                                                             acgggtaaGGAACTTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAAtt                                                             <  1:226406/137‑1 (MQ=255)                                                                gTGGAGGAACGTAATATTGAGTTTAAGGCTGTCCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTAct                                                          <  2:219806/143‑1 (MQ=255)                                                                gTGAAGGACCGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGACCCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTAct                                                          <  2:126346/143‑1 (MQ=255)                                                                    aGGAACGTAAGATTGAGTTGAGGGCTGTGCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCa                                                      <  1:200498/143‑1 (MQ=255)                                                                               atTGAGTTTAAGGGTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGt                                           <  1:281891/143‑1 (MQ=255)                                                                               atTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGt                                           <  2:553663/143‑1 (MQ=255)                                                                                ttGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCATGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGta                                          >  1:28540/1‑142 (MQ=255)                                                                                  gAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGGTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTGAg                                        >  1:571336/1‑143 (MQ=255)                                                                                        aaGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATCAGCGCTCACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGCTGAATTACTCTCACGATAACTGGCCAGCAATTc                                  >  2:837829/1‑143 (MQ=255)                                                                                           gCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTgg                               <  2:652027/143‑1 (MQ=255)                                                                                            cggtgctcGCTTACGAACCGAAGAAGTAGCCGGTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGTTTGGTGTAGTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGc                              <  2:128343/138‑1 (MQ=18)                                                                                            cTGGTCCCGCTTACGAACCGAAGAAGTAGCCGTGGGGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGc                              <  2:469669/143‑1 (MQ=255)                                                                                               ttCGCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCa                           <  1:271682/143‑1 (MQ=255)                                                                                                   cccTTACGAACCGAAGAAGCCGCTGTTGTGCGGGGAGTCCTCTCCTAAGCTCTCACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGACTTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATAtt                       <  2:205809/141‑1 (MQ=14)                                                                                                   cGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACCCCCACGATAACTGGTCAGCAATTCTGGCCCATCtt                       >  1:209314/1‑143 (MQ=255)                                                                                                   cGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGACTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGCTTTAACGTGCCGATGAGTTACTCTCACGATAACTAGTGATCAAGTCTGGCCAATCtt                       >  1:349426/1‑143 (MQ=18)                                                                                                    gCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCGATAGTg                      >  2:7520/1‑143 (MQ=255)                                                                                                    gCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATGTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTg                      <  2:123469/143‑1 (MQ=255)                                                                                                          gAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGGATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCCATTCTGGCCCATATGGGTAAGc                >  2:787698/1‑143 (MQ=255)                                                                                                            aCCGAAGAAGTAGCCGTTGTGCGGGGGGTAATCCCATAAGCACTAACTGAAGGGTTGTGGTATTACGCCTGAGATGATTTAATGTGCCGATGAATTACTCTCCCCATAACTCGTCCGAAATTCTGGCAGATACTAGTAAGccc              >  1:10344/1‑143 (MQ=17)                                                                                                                       aGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGa   <  2:831440/143‑1 (MQ=255)                                                                                                                       aGCCGTCGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGa   <  2:86879/143‑1 (MQ=255)                                                                                                                        gCCGTTGTGCGGGGAGTAATCGCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCGGATATGATTTGACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCACCTTGGTCCGCCCGCAGCACTggct  >  2:447461/1‑141 (MQ=14)                                                                                                                                               |                                                                                                                        GTGCTGTGTTTAACGGTGCTGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGAT  >  NC_000913/607869‑608130

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.