| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3104380 | 55 (1.040) | 3 (0.060) | 3/268 | 7.9 | 5.5% | intergenic (+14/‑51) | yggX/mltC | oxidative damage protective factor for iron‑sulfur proteins/membrane‑bound lytic murein transglycosylase C |
| ? | NC_000913 | = 3104385 | 52 (1.040) | intergenic (+19/‑46) | yggX/mltC | oxidative damage protective factor for iron‑sulfur proteins/membrane‑bound lytic murein transglycosylase C | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GAAACTCAACATGATGAATGCCGAGCACCGCAAGCTGCTTGAGCAGGAGATGGTCAACTTCCTGTTCGAGGGTAAAGAGGTGCATATCGAGGGCTATACGCCGGAAGATAAAAAATAAAAACAGTGCCGGAGCACGCCTCCGGCAACTTGCATAAAAACAAACACAACACGCACCCGGAATGATGAAAAAATATCTCGCGCTGGCTTTGATTGCGCCGTTGCTCATCTCCTGTTCGACGACCAAAAAAGGCGATACCTATAACGAAGCCTGG > NC_000913/3104249‑3104520 | gAAACTCAACATGATGAATGCCGAGCACCGCAAGCTGCTTGAGCAGGAGGTGGTCAACTTCCTGTTCGAGGGTAAAGAGGTGCATATCGAGGGCTATACGCCGGAAGATAAAAAATAAAAACAGTGCCGGAGCACGCCCCCgg > 1:170047/1‑143 (MQ=255) tCAACATGATGGATGCCGAGCACCGCAAGCTGCTTGAGCAGGAGATGGTCAACTTCCTGTTCGAGGGTAAAGAGGTGCATATCGAGGGCTATACGCCGGAAGATAAAAAATAAAAACAGCGCCGGAGCACGCCTCCCGCACCt > 1:256094/1‑143 (MQ=255) tCAACATGATGAATGCCGAGCACCGCAAGCTGCTTGAGCAGGAGATGGTCAACTTCCTGTTCGCGGGTACAGAGGTGCATATCGAGGGCTATACGCCGGACGATAAAAAATAAAAACAGTGCCGGAGCGCGCCTCCGGCCACt > 1:152002/1‑143 (MQ=255) ggacgtgatgaGTTGCGAGCGCCGGAGGCTGCTTGAGCATGAGATGGTCGACTTCCTGTTCGACGGTAAAGAGGTGCATATCGAGGGTTAGACGCCGGAAGATAAAAAATAAAAACCGTGCCGGAGCACGCCTCCGGCAACtt < 1:871382/138‑1 (MQ=255) tgatgaATGCCGAGCACCGCAAGCTGCTTGAGCAGGAGATGGTCAACTTCCTGTTCGAGGGTAAAGAGGTGCATATCGAGGGCTATACGCCGGCAGATAAAAAATAAAAACAGTGCCGGAGCACGCCTCCGGCAACATGCaaa > 1:850527/1‑141 (MQ=255) tgaATGCCGAGCACCGCGAGCTGCATGAGCAGGAGATGGTCAACTTCCTGTTCGAGGGTAAAGAGGTGCATATCGAGGGCTATACGCCGGAAGATAAAAAATAAAAACAGTGCCGGAGCACGCCTCCGGCAACTTGCATaaaa < 2:798749/143‑1 (MQ=255) gaATGCCGAGCACCGCAAGCTGCTTGAGCAGGAGATGGTCAACTTCCTGTTCGAGGGGAAAGAGGTGCATATCGAGGGCTATACGCCGGGAGATAACACATAAAAACCGGGCCGCGGCACGCCTCCCGCCACTCGCACaaaaa > 2:272132/1‑143 (MQ=255) aaTGCCGAGCACCGCAAGCTGCTTGAGCAGGAGATGGTCAACTTCCTGTTCGAGGGTAAAGAGGTGCATATCGAGGGCTATACGCCGGAAGATAAAAAATAAAAACAGGGCCGGAGCACGCCTCCGGCAACTTGCACAAaaac > 1:270328/1‑143 (MQ=255) tGCCGAGCACCGCAAGCTGCTTGAGCAGGAGATGGTCAACTTCCTGTTCGAGGGTAAAGAGGTGCATATCGAGGGCTATACGCCGGAAGATAAAAAATAAAAACAGTGCCGGAGCACGCCTCCGGCAACTTGCATAAaaacaa < 2:716687/143‑1 (MQ=255) gCCGGGCGCCGGAGGCGGGTTGAGCGGGAGAGGGTCAACTACCTGTTCGAGGGTAAAGAGGTGCATATCGAGGGCTATACGCCGGAAGATAAAAAATAAAAACAGTGCCGGAGCACGCCTCCGGCAACTTGCATAAaaacaaa < 1:303692/143‑1 (MQ=255) gCCGAGCACCGCAAGCTGCTTGAGCAGGAGATGGTCAACTTCCTGTTCGAGGGTAAAGAGGTGCATATCGAGGGCTATACGCCGGAAGATAAAAAATAAAAACAGTGCCGGAGCACGCCTCCGGCAACTTGCATAAaaacaaa < 2:545269/143‑1 (MQ=255) ccGAGCACCGCAAGCTGCTTGAGCAGGAGATGGTCAACTTCCTGTTCGAGGGTAAAGAGGTGCATATCGAGGGCTATACGCCGGAAGATAAAAAATAAAAACAGTGCCGGAGCACGCCTCCGGCAACTTGCATAAaaacaaac > 2:644843/1‑143 (MQ=255) ccGACCACCTCAAGCTGCTTGAGCAGGAGATGGTCAACTTCCTGTTCGAGGGTAAAGAGGTGCATATCGAGGGCTATACGCCGGAAGATAAAAAATAAAAACAGTGCCGGAGCACGCCTCCGGCAACTTGCATAAaaaccaac > 2:214238/1‑143 (MQ=255) gctgctTGCGCAGGAGATGGTCAACTTCCTGTTCGAGGGTAAAGAAGTGTTTCAACACAAGGATACGCCGGAAGATAAAAAATAAAAACAGTGCCGGAGCACGCCTCCGGCAACTTGCATAAAAACAAACACAACACGCAccc < 2:905573/143‑1 (MQ=255) gctgctTGAGCAGGAGATGGTCAACTTCCTGTTCGAGGGTAAAGAGGTGCATATCGAGGGCTATACGCCGGAAGATAAAAAATAAAAACAGTGCCGGAGCACGCCTCCGGCAACTTGCATAAAAACAAACACAACACGCAccc > 1:11705/1‑143 (MQ=255) ggaTGGTCAACTTCCTGTTCGAGGGTAAAGAGGTGCATATCGAGGGCTATACGCCGGAAGATAAAAAATAAAAACAGTGCCGGAGCACGCCTCCGGCAACTTGCATAAAAACAAACACAACACGCACCCGGAATGATGaaaaa < 2:101621/142‑1 (MQ=255) tCAACTTCCTGTTCGAGGGTAAAGAGGTGCATATCGAGGGCTATACGCCGGAAGATAAAAAATAAAAACAGTGCCGGAGCACGCCTCCGGCAACTTGCATAAAAACAAACACAACACGCACCCGGAATGATGACAAAATAtct > 1:773056/1‑143 (MQ=255) cTTCCTGTTCGAGGGTAAAGAGGTGCATATCGAGGGCTATACGCCGGAAGATAAAAAATAAAAACAGTGCCGGAGCACGCCTCCGGCAACTTGCATAAAAACAAACACAACACGCACCCGGAATGATGAAAAAATATCTcgcg > 1:192587/1‑143 (MQ=255) tCCTGTTCGAGGGTAAAGAGGTGCATATCGAGGGCTATACGCCGGCAGATCACAAATAAAAACAGTGCCGGAGCACGCCTCCGGCAACTTGCATAAAAACAAACACACCACGCACCCGGAATGATGAAAAAATATCTCGCGCt > 1:882774/1‑143 (MQ=255) ttCGAGGGTAAAGAGGTGCATATCGAGGGCTATACGCCACCAGATAAAAAATAAAAACCGTACCGGAGCACGCCTCCGGCAACTTGCATAAGAACAAACACAACACGCACCCGGAATGATGAAAAAATATCTCGCGCTGGCtt < 2:569378/143‑1 (MQ=255) gcGAGGGTAAACAGGTGCATAGCGAGGGCTAGACGCCGGAAGATAAAAAATAAAAACAGTGCCGGAGCACGCCTCCGGCAACTTGCATAAAAACAAACACAACACGCACCCGGAATGATGAAAAAATATCTCGCGCTGGCttt < 2:126488/142‑1 (MQ=255) gAGGGTAAAGAGGTGCATATCGAGGGCTATACGCCGGAAGATAAAAAATAAAAACAGTGCCGGAGCACGCCTCCGGCAACTTGCATAAAAACAAACACAACACGCACCCGGAATGATGAAAAAATATCTCGCGCTGGCTTTGa > 1:235549/1‑143 (MQ=255) agggacaaGAGGTGCACATCGAGGGCTATACGCGGGAAGATAAAAAATAAAAACAGTGCCGGAGCACGCCTCCGGCAACTTGCATAAAAACAAACACAACACGCACCCGGAATGATGAAAAAATATCTCGCGCTGGCTTTGAt < 1:722146/137‑1 (MQ=255) aGGGTAAAGAGGTGCATATCGAGGGCTATACGCCGGAAGATAAAAAATAAAAACAGTGCCGGAGCACGCCTCCGGCAACTTGCATAAAAACAAACACAACACGCACCCGGAATGATGAAAAAATATCTCGCGCTGGCTTTGAt > 1:561747/1‑143 (MQ=255) tAAAGAGGTGCATATCGAGGGCTATACGCCGGAAGATAAAAAATAAAAACAGTGCCGGAGCACGCCTCCGGCCACTTGCATAAAAACAAACACAACACGCCCCCGGAATGATCAAAAAATATCTCGCGCTAACTCTGATcgcg > 2:508396/1‑143 (MQ=255) aaGAGGTGCATATCGAGGGCTATACGCCGGAAGATAAAAAATAAAAACAGTGCCGGAGCACGCCTCCGGCCACTTGCATAAAAACAAACACAACACGCACCCGGAATGATGAAACAATATCTCGCGCTGGCGTTGCTTGCGcc > 1:753085/1‑143 (MQ=255) ggTGCATATCGAGGGCTATACGCCGGAAGATAAAAAATAAAAACAGTGCCGGAGCACGCCTCCGGCAACTTGCATAAAAACAAACACAACACGCACCCGGAATGATGAAAAAATATCTCGCGCTGGCTTTGATTGCGCCGTTg < 2:698918/143‑1 (MQ=255) ggTGCATATCGAGGGCGAGACGCCGGAAGAAAAAAAATAAAAACAGTGCCGGAGCACGCCTCCGGCAACTTGCATAAAAACAAACACAACACGCACCCGGAATGATGAAAAAATATCTCGCGCTGGCTTTGATTGCGCCGTTg < 1:243843/143‑1 (MQ=255) gCATATCGAGGGCTATACGCCGGAAGATAAAAAATAAAAACAGTGCCGGAGCACGCCTCCGGCAACTTGCATAAAAACAAACACAACACGCACCCGGAATGATGAAAAAATATCTCGCGCTGGCTTTGATTGCGCCGTTGcgc > 2:505515/1‑141 (MQ=255) atatCGAGGGCTATACGCCGGAAGATAAAAAATAAAAACAGTGCCGGAGCACGCCTCCGGCAACTTGCATAAAAACAAACACAACACGCACCCGGAATGATGAAAAAATATCTCGCGCTGGCTTTGATTGCGCCGTTGCTCAt > 2:41002/1‑143 (MQ=255) tcgcGAGGGCTGTAGGCCGGAAGCAAGAAGATAAAAACAGTGCCGGAGCACGCCTCCGGCAACTTGCATAAAAACAAACACAACACGCACCCGGAATGATGAAAAAATATCTCGCGCTGGCTTTGATTGCGCCGTTGCTCAtc < 1:145411/140‑1 (MQ=255) tatCGAGGGCTATACGCCGGAAGATAAAAAATAAAAACAGTGCCGGAGCACGCCTCCGGCAACTTGCATAAAAACAAACACAACACGCACCCGGAATGATGAAAAAATATCTCGCGCTGGCTTTGATTGCGCCGTTGCTCAtc < 2:362947/143‑1 (MQ=255) tCGAGGGCTATACGCCGGAAGATAAAAAATAAAAACAGTGCCGGAGCACGCCTCCGGCAACTTGCATAAAAACAAACACAACACGCACCCGGAATGATGAAAAAATATCTCGCGCTGGCTTTGATTGCGCCGTTGCTCAtctc < 2:789648/143‑1 (MQ=255) tCGAGGGCTATACGCCGGAAGATAAAAAATAAAAACAGTGCCGGAGCACGCCTCCGGCAACTTGCATAAAAACAAACACAACACGCACCCGGAATGATGAAAAAATATCTCGCGCTGGCTTTGATTGCGCCGTTGCTCAtctc < 1:561503/143‑1 (MQ=255) ggCTATACGCCGGAAGATAAAAAATAAAAACAGTGCCGGAGCACGCCTCCGGCAACTTGCATAAAAACAAACACAACACGCACCCGGAATGATGAAAAAATATCTCGCGCTGGCTTTGATTGCGCCGTTGCTCATCTCCTGtt < 1:644843/143‑1 (MQ=255) gccTATACGCCGGAAGATAAAAAATAAAAACAGTGCCGGTGCACGCCTCCGGCAACTTGCATACAAACAAACACAACACGCACCCGGCATGATGAAAAAATATCTCGCGCTGGCTTCGATTGCGCCGTTGCTCATCTCCTGtt < 1:870833/141‑1 (MQ=255) aCGCCGGAAGATAAAAAATAGAAAAAGTGCCGGAGAACGCCTCAGGCAACTTGCATAAAAACAAACACAACGCGCACCCGGAATGATGAAAAAATATCTCGCGCTGGCTTTGATTGCGCCGTTGCTCATCTCCTGTTcgacga < 1:17013/143‑1 (MQ=255) aCGCCGGAAGATAAAAAATAAAAACAGTGCCGGAGCACGCCTCCGGCAACTTGCATAAAAACAAACACAACACGCACCCGGAATGATGAAAAAATATCTCGCGCTGGCTTTGATTGCGCCGTTGCTCATCTCCTGTTcgacga < 2:276441/143‑1 (MQ=255) aGATAAAAAATAAAAACAGGGCCGGAGCACGCCTCCGGCAACTTGCATAAAAACAAACACAACACGCACCCGGAAAGATGAAAAAATATCTCGCGCTGGCTTTGATTGCGCCGTTGCTCATCTCCTGTTCGACGACCaaaaaa < 1:458123/143‑1 (MQ=255) ctaaaaaataaaaaCAGTGCCGGAGCACGCCTCCGGCAACTTGCATAAAAACAAACACAACACGCCCACGGAATGATGAAAAAATATCTCGCGCTAGCTTTGATTCCGCCGGAGCTCATCTCCTGCTCGACGCCCAAAAAAgg > 1:318262/2‑143 (MQ=255) ataaaaaataaaaaCAGTGCCGGAGCACGCCTCCGGCAACTTGCATAAAAACAAACACAACACGCACCCGGAATGATGAAAAAATATCTCGCGCTGGCTTTGATTGCGCCGTTGCTCATCTCCTGTTCGACGACCAAAAAAgg < 2:653009/143‑1 (MQ=255) taaaaaataaaaaCAGTGCCGGAGCACGCCTCCGGCAACTTGCATAAAAACAAACACAACACGCACCCGGAATGATGAAAAAATATCTCGCGCTGGCTTTGATTGCGCCGTTGCTCATGTCGTGTTCGAGGAAGAAAAAAGGc > 2:272861/1‑143 (MQ=255) taaaaaataaaaaCAGTGCCGGAGCACGCCTCCGGCAACTTGCATAAAAACAAACACAACACGCACCCGGAATGATGAAAAAATATCTCGCGCTGGCTTTGATTGCGCCGTTGCTCATCTCCTGTTCGACGACCAAAAAAGGc > 2:120824/1‑143 (MQ=255) taaaaaataaaaaCAGTGCCGGAGCACGCCTCCGGCAACTTGCATAAAAACAAACACAACACGCACCCGGAATGATGAAAAAATATCTCGCGCTGGCTTTGATTGCGCCGTTGCTCATCTCCTGTTCGACGACCAAAAAAGGc < 2:235549/143‑1 (MQ=255) aaaaaataaaaaCAGTGCCGGAGCACGCCTCCGGCAACTTGCATAAAAACAAACACAACACGCACCCGGAATGATGAAAAAATATCTCGCGCTGGCTTTGCTTGCGCCGTTGCTCATATCCTGTTCGACGACCAAAAAAGGCg > 1:218693/1‑143 (MQ=255) aaaaataaaaaCAGTGCCGGAGCACGCCTCCGGCAACTTGCATAAAAACAAACACAACACGCACCCGGAATGATGAAAAAATATCTCGCGCTGGCTTTGATTGCGCCGTTGCTCCTCTCCTGTTCGACGACCAAAAAAGGCGa > 2:320318/1‑143 (MQ=255) aaaaataaaaaCAGTGCCGGAGCACGCCTCCGGCAACTTGCATAAAAACAAACACAACACGCACCCGGAATGATGAAAAAATATCTCGCGCTGGCTTTGATTGCGCCGTTGCTCATCTCCTGTTCGACGACCAAAAAAGGCGa < 2:561747/143‑1 (MQ=255) aaaataaaaaCAGTGCCGGAGCACGCCTCCGGCAACATGCATAAAAACAAACACAACACGCACCCGGAATGATGAAAAAATATCTCGCGCTGGCTTTGATTGCGCCGTTGCTCCTCCCCGGTTCCACCACCAAAAAAGCCGaa > 1:253405/1‑142 (MQ=255) aaataaaaaCCTGGCCGGAGCACGCCTCCGGCAACTTGCATAAAAACAAACACAACACGCACCCGGAATGATGAAAAAATATCTCGCGCTGGCTTTTATTGCGCCGTTGCTCATCTCCTGTTCGACGACCAAAAAAGGCGATa < 2:224738/143‑1 (MQ=255) gTGCCGGAGCACGCCTCCGGCAACTGGCATAAAAACAAACACAACACGCACCCGGAATGATGAAAAAATATCTCGCGCTGGCTTTGATTGCGCCGTTGCTCATCTCCTGTTCGACGACCAAAAAAGGCGATACCTATAACGaa < 1:558336/143‑1 (MQ=255) ccGGAGCACGCCTCCGGCAACTTGCATAAAAACAAACACAACACGCACCCGGAATGATGAAAAAATATCTCGCGCTGGCTTTGATTGCGCCGTTGCTCATCTCCTGTTCGACGACCAAAAAAGGCGATACCTATAACGAAGcc > 2:156200/1‑143 (MQ=255) ggAGCACGCCTCCGGCAACTTGCATAAAAACAAACACAACACGCACCCGGAATGATGAAAAAATATCTCGCGCTGGCTTTGATTGCGCCGTTGCTCATCTCCTGTTCGACGACCAAAAAAGGCGATACCTATAACGAAGCCTg < 2:442503/143‑1 (MQ=255) gAGCACGCCTCCGGCAACTTGCATAAAAACAAACACAACACGCACCCGGAATGATGAAAAAATATCTCGCGCTGGCTTTGATTGCGCCGTTGCTCATCTCCTGTTCGACGACCAAAAAAGGCGATACCTATAACGAAGCCTgg < 2:270328/143‑1 (MQ=255) gAGCACGCCTCCGGCAACTTGCACAACAACAACCACACCACGCACCCGGAATGATGAAAAAATATCTCGCGCTGGCTTTGATTGCGCCGTTGCTCATCTCCTGTTCGACGACCAAAAAAGGCGATACCTATAACGAAGCCTgg < 1:345846/143‑1 (MQ=255) | GAAACTCAACATGATGAATGCCGAGCACCGCAAGCTGCTTGAGCAGGAGATGGTCAACTTCCTGTTCGAGGGTAAAGAGGTGCATATCGAGGGCTATACGCCGGAAGATAAAAAATAAAAACAGTGCCGGAGCACGCCTCCGGCAACTTGCATAAAAACAAACACAACACGCACCCGGAATGATGAAAAAATATCTCGCGCTGGCTTTGATTGCGCCGTTGCTCATCTCCTGTTCGACGACCAAAAAAGGCGATACCTATAACGAAGCCTGG > NC_000913/3104249‑3104520 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |