New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3478877	54 (1.020)	3 (0.060)	3/274	8.1	5.8%	coding (1729/1806 nt)	kefB	potassium:proton antiporter
	?	NC_000913	= 3478891	46 (0.900)					coding (1715/1806 nt)	kefB	potassium:proton antiporter
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GCATTTTGCGCCCGCAATAAAACGTTTTCGGATTGCCATCTTTACCCTCTACTCAAATTCATCCCAGCCGTCCAGCTGGCGTCGTTCTTGTTGCATTTCACGCTGGAAAATCTCTTCCAGTT‑CGCGTCGGGCTTCCCTGGCGCGAGAAATTTGTACGGTATCGGCATGCATTGGGATGAGCTCTCGCAGCATCCGCATATCCAGGCGGCGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCCAGCT  >  NC_000913/3478752‑3479032                                                                                                                                             |                                                                                                                                              gCATTTTGCGCCCGCAATAAAACGTTTTCGGATTGCCATCTTTACCCTCTACTCAAATTCATCCCAGCCGTCCAGCTGGCGTCGTTCTTGTTGCATTTCCCGCTGGAAAATGTCTTCCAGTT‑CGCGTCTGGCTTCCCTGgcgc                                                                                                                                            >  1:304503/1‑143 (MQ=255)   atgttGCGCCCGCAATAAAACGTTTTCGGATTGCCATCGTTACCCGCTACTCAAATTCATCCCAGCCGGCCAGCTGGCGTCGTTCTTGTTGCATTTCACGCTGGAAAATCTCTTCCAGTT‑CGCGTCGGGCTTCCCTGGCGCga                                                                                                                                          <  1:491415/140‑1 (MQ=255)   aTTTTGCGCCCGCAATAACACGTTTTCGGATTGCCATCCTTACCCTCTACTCAAATTCATCCCAGCCGTCCAGCTGGCGTCGTTCTTGTTGCATTTCACGCTGGAAAATCTCTTCCAGTT‑CGCGTCGGGCTTCCCTGGCGCga                                                                                                                                          <  1:629412/143‑1 (MQ=255)            ccGCAATAAAACGTTTTCGGATTGCCATCTTTACCCTCTACTCAAATTCATCCCAGCCGTCCAGCTGGCGTCGTTCTTGTTGCATTTCACGCTGGAAAATCTCTTCCAGTT‑CGCGTCGGGCTTCCCTGGCGCGAGAAATTTGt                                                                                                                                 >  2:641164/1‑143 (MQ=255)            ccGCAATAAAACGTTTTCGGATTGCCATCTTTACCCTCTACTCAAATTCATCCCAGCCGTCCAGCTGGCGTCGTTCTTGTTGCATTTCACGCTGGAAAATCTCTTCCAGTT‑CGCGTCGGGCTTCCCTGGCGCGAGAAATTTGt                                                                                                                                 >  2:642824/1‑143 (MQ=255)                  tagagcGTTTTCGGAGTGCTAGCTTTGCCCTCTTCTCAGATGCATCCCAGCCGTCCAGCTGGCGTCGTTCTGGTTGCATTTGACGCTGGAAAATCTCTTCCAGTT‑CGCGTCGGGCTTCCCTGGCGCGAGAAATTTGTACGGTa                                                                                                                           <  1:510807/138‑1 (MQ=255)                     aaccagttCGGATTGCCATCTTCACCCTCTACGCAAATGCAGCCCAGCCGCCCAGCTGGCGTCGTTCTTGTTGCATTTCACGCTGGAAAATCTCGTCCAGTT‑CGCGTCGGGCTTCCCTGGCGCGAGAAATTTGTACGGTATCg                                                                                                                        <  2:439675/137‑1 (MQ=255)                         tgttCGGCTTGCCCTCTTTACCCTCTACTAACTAACAGTGCGTCCGTCCAGCTGGCGTCGTTCTTGTTGCATTTCACGCTGGAAAATCTCTTCCAGTT‑CGCGTCGGGCTTCCCTGGCGCGAGAAATTTGTACGGTATCGgcat                                                                                                                    <  1:883516/141‑1 (MQ=255)                           tttgtaTTGTCTTCTTTTTCCTCTTCTCAAATCCATCACAGCCGCCCAGACGGCGTCGTTCTTGTTGCATTTCACGCTGGAAAATCTCTTCCAGTT‑CGCGTCGGGCTTCCCTGGCGCGAGAAATTTGTACGGTATCGgcatgc                                                                                                                  <  2:724940/138‑1 (MQ=255)                            tCGGATTGCCATCTTTACCCTCTACTCAAATTCATCCCAGCCGTCCAGCTGGCGTCGTTCTTGTTGCATTTCACGCTGGAAAATCTCTTCCAGTT‑CGCGTCGGGCTTCCCTGGCGCGGGGAATTTGTACGGTATCGgcatgca                                                                                                                 >  2:719283/1‑143 (MQ=255)                               gATTGCCATCTTTACCCTCTACTCAAATTCATCCCAGCCGTCCAGCTGGCGTCGTTCTTGTTGCATTTCACGCTGGAAAATCTCTTCCAGTT‑CGCGTCGGGCTTCCCTGGCGCGAGAAATTTGTACGGTATCGGCATGCATTg                                                                                                              <  1:679171/143‑1 (MQ=255)                               gATTGCCATCTTTACCCTCTACTCAAATTCATCCCAGCCGTCCAGCTGGCGTCGTTCTTGTTGCATTTCACGCTGGAAAATCTCTTCCAGTT‑CGCGTCGGGCTTCCCTGGCGCGAGAAATTTGTACGGTATCGGCATGCATTg                                                                                                              <  1:445565/143‑1 (MQ=255)                               gATTGCCATCTTGACCCTCTACTCAAATTCATCCCAGCCGTCCAGCTGGCGTCGTTCTTGTTGCATTTCCCGCTGGAAAATCTCTTCCAGTT‑CGCGTCGGGCTTCCCTGGCGCGAGAAATTTGTACGGTATCGGCATGCATTg                                                                                                              <  2:533662/143‑1 (MQ=255)                                  tGCCATCTTTACCCTCTACTCAAATTCATCCCAGCCGTCCAGCTGGCGTCGTTCTTGTTGCATTTCACGCTGGAAAATCTCTTCCAGTT‑CGCGTCGGGCTTCCCTGGCGCGAGAAATTTGTACGGTATCGGCATGCATTGGGa                                                                                                           <  2:127153/143‑1 (MQ=255)                                   gCCATCTTTACCCTCTACTCCAATTCACCCCAGCCGTCCGGCTGGCGTCGTTCTTGTTGCATTTCCCGCTGGAAAATCTCTTCCAGTT‑CGCGAAGGGCTTGCCTGGAGTGCGATCTTTGTACGGTATCGGCATGCATTGGGAt                                                                                                          <  2:428964/143‑1 (MQ=255)                                    ccATCTTTACCCTCTACTCAAATTCATCCCAGCCGTCCAGCTGGCGTCGTTCTTGTTGCATTTCACGCTGGAAAATCTCTTCCAGTT‑CGCGTCGGGCTTCCCTGGCGCGAGCAATGTGCACGGTATCGGCATGCATTGGGCTg                                                                                                         >  1:489530/1‑143 (MQ=255)                                      aTCTTTACCCTCTACTCAAATTCATCCCAGCCGTCCAGCTGGCGTCGTTCTTGTTGCATTTCACGCTGGAAAATCTCTTCCAGTT‑CGCGTCGGGCTTCCCTGGCGCGAGAAATTTGTACGGTATCGGCATGCATTGGGATGAg                                                                                                       <  2:236339/143‑1 (MQ=255)                                      aTCTGTCCCCTCCACTCAAATTCATCCCAGCCGTCCAGCTGGCGTCGTTCTTGTTGCATTTCACGCTGAAAAATCTCTTCCAGTT‑CGCGTCGGGCTTCCCTGGCGCGAGAAATTTGTACGGTATCGCCATGCATCGGGATGAg                                                                                                       <  1:631502/143‑1 (MQ=255)                                       tCTTTACCCTCTACTCAAATGCATCCCAGCCGGCCAGCTGGCGTCGTTCTTGTTGCATTTCACGCTGGAAAATCTCTTCCAGTT‑CGCGTCGGGCTTCCCTGGCGCGAGAAATTTGTACGGTATCGGCATGCATTGGGATGAGc                                                                                                      <  2:330639/143‑1 (MQ=255)                                          ttACCCTCTACTCAAATTCATCCCAGCCGTCCAGCTGGCGTCGTTCTTGTTGCATTTCACGCTGGAAAATCTCTTCCAGTT‑CGCGTCGGGCTTCCCTCGCGCGAGAAATTTGTACGGTATCGGCGTGCATTGGGATCAGctct                                                                                                   >  1:534305/1‑143 (MQ=255)                                             cccTCTACTCAAATTCATCCCAGCCGTCCAGCTGGCGTCGTTCTTGTTGCATTTCACGCTGGCAAATCTCTTCCAGTT‑CGCGTCGGGCTTCCCTGGCGCGAGAAATTTGTACGGTATCGGCATGCATTGGGATGAGCTCTCgc                                                                                                <  1:646148/143‑1 (MQ=255)                                              cctttgcTCAAATTCATCCCAGCCGTCCAGCTGGCGTCGTTCTTGTTGCATTTCTCGCTGGAAAATCTTTTCCAGTT‑CGCGTCGGGCTTCCCTGGCGCGAGAAATTTGTACGGTATCGGCATGCATTGGGATGAGCTCTCgca                                                                                               <  1:442479/137‑1 (MQ=255)                                              ccTCTACTCTGATGCATCCCAGTCGTGCAGCTGGCGTCGTTGTTGTTGCATTTCACGCTGGAAAATCTCTTCTAGTT‑CGCGTCGGGCTTCCCTGGCGCGAGAAATTTGTACGGTATCGGCATGCATTGGGATGAGCTCTCgca                                                                                               <  1:336011/143‑1 (MQ=255)                                              ccTCTACTCAAGTTCATCCCAGCCGGCCAGCTGGCGTCGTTCTTGTTGCATTTCACGCTGGAAAATCTCTTCCAGTT‑CGCGTCGGGCTTCCCTGGCGCGAGAAATTTGTACGGTATCGGCATGCATTGGGATGAGCTCTCgca                                                                                               <  2:634758/143‑1 (MQ=255)                                              ccTCTACTCAAATTCATCCCAGCCGTCCAGCTGGCGTCGTTCTTGTTGCATTTCACGCTGGAAAATCTCTTCCAGTT‑CGCGTCGGGCTTCCCTGGCGCGAGAAATTTGTACGGTATCGGCATGCATTGGGATGAGCTCTCgca                                                                                               >  1:92657/1‑143 (MQ=255)                                                   cgccaaatcagtCCCAGCCCGCCAGTTGGCGTCGTGCGTGTTGCTTTGCACGCTGGAAGTCATCTTAACGTTGCACG‑CCGGCTTCCCGGTCGCGAGAAATTTGTATGGTAGCGGCATGCATTGGGATGAGCTCTCGCAGCATc                                                                                          <  1:551787/132‑1 (MQ=255)                                                              tCCCAGCCGTCCAGCTGGCGTCGTTCTTGTTGCATTTCACGCTGGAAAATCTCTTCCAGTT‑CGCGTCGGGCTTCCCTGGCGCGAGAAATTTGTACGGTATCGGCATGCATTGGGATGAGCTCTCGCAGCATCCGCATATCCAg                                                                               >  2:484255/1‑143 (MQ=255)                                                               cccAGCCGTCCAGCTGGCGTCGTTCTTGTTGCATTTCACGCTGGAAAATCTCTTCCAGTT‑CGCGTCGGGCTTCCCTGGCGCGAGAAATTTGTACGGTATCGGCATGCATTGGGATGAGCTCTCGCAGCATCCGCATATCCAgg                                                                              >  2:560262/1‑143 (MQ=255)                                                                    ccGTCCAGCTGGCGTCGTTCTTGTTGCATTTCACGCTGGAAAATCTCTTCCAGTT‑CGCGTCGGGCTTCCCTGGCGCGAGAAATTTGTACGGTATCGGCATGCATTGGGATGAGCTCTCGCAGCCTCCGCATATCCAGggggcg                                                                         >  2:857433/1‑143 (MQ=255)                                                                      gTCCAGCTGGCGTCGTTCTTGTTGCAATTCACGCTGGAAAATCTCTTCCAGTT‑CGCGTCGGGCTTCCCTGGCGCGAGAAATTTGTACGGTATCGGCATGCATTGGGATGAGCTCTCGCAGCATCCGCATATCCAGGCGGCGaa                                                                       >  1:667665/1‑143 (MQ=255)                                                                         cAGCTGTCTTCGTTCTTGTTGCATTTCCCGCTGGAAAATCTCTTCCAGTT‑CGCGGCGGGCTTCCCTGGCGCGGGAAATTTGTACGGTATCGGCATGCATTGGGATGAGCTCTCGCAGCATCCGCATATCCAGGCGGCGAAAAt                                                                    <  1:127351/143‑1 (MQ=255)                                                                                     ttCTTGTTGCATTTCACGCTGGAAAATCTCTTCCAGTT‑CGCGTCGGGCTTCCCTGGCGCGAGAAATTTGTACGGTATCGGCATGCATTGGGATGAGCTCTCGCAGCATCCGCATATCCAGGCGGCGAAAATGCAGTTGcgctc                                                        >  2:774200/1‑143 (MQ=255)                                                                                          gttgCATTTCACGCTGGAAAATCTCTTCCAGTT‑CGCGTCGGGCTTCCCTGGCGCGAGAAATTTGTACGGTATCGGCATGCATTGGGATGAGCTCTCGCAGCATCCGCATATCCAGGCGGCGAAAATGCAGTTGCGCTCGCtgt                                                   <  2:751316/143‑1 (MQ=255)                                                                                               aTTTCACGCTGGAAAATCTCTTCCAGTT‑CGCGTCGGGCTTCCCTGGCGCGAGAAATTTGTACGGTATCGGCATGCATTGGGATGAGCTCTCGCAGCATCCGCATATCCAGGCGGCGAAAATGCAGTTGCGCTCGCTGTGCCTg                                              <  2:348207/143‑1 (MQ=255)                                                                                                 ttCACGCTGGAAAATCTCTTCCAGTT‑CGCGTCGGGCTTCCCTGGCGCGAGAAATTTGTACGGTATCGGCATGCATTGGGATGAGCTCTCGCAGCATCCGCATATCCAGGCGGCGAAAATGCAGTTGCGCTCGCTGTGCCTGAt                                            >  1:533924/1‑143 (MQ=255)                                                                                                   cACGCTGGAAAATCTCTTCCAGTT‑CGCGTCGGGCTTCCCTGGCGCGAGAAATTTGTACGGTATCGGCATGCATTGGGATGAGCTCTCGCAGCATCCGCATATACCGGCGGCGAAACTAGAGTTGcgcacgagctgctttaggc                                          >  1:317049/1‑130 (MQ=255)                                                                                                       cTGGAAAATTTCTTCCAGTT‑CGCCTGCGGCTTCCCTGTCGCGAGAAATTTGTACGGTATCGGCATGCATTGGGATGAGCTCTCGCAGCATCCGCATATCCAGGCGGCGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGat                                      <  1:434906/143‑1 (MQ=255)                                                                                                           aaaaTCTCTTCCAGTT‑CGCGTCGGGCTTCCCTGGCGCGAGAAATTTGTACGGTATCGGCATGCATTGGGGTGAGCGCTCGCAGCATCCGCATATCCAGGCGGCGCAAATGCAGTTGGGGTCGCTGTGCCTCATGCGGatgcag                                  >  1:835625/1‑142 (MQ=255)                                                                                                               tctcTTCCAGTT‑CGCGTCGGGCTTCCCTGGCGCGAGAAATTTGTACGGTATCGGCATGCATTGGGATGAGCTCTCGCAGCATCCGCATATCCAGGCGGCGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCa                              >  1:168829/1‑143 (MQ=255)                                                                                                                tacctCCAGTT‑CGCGTCGGGCTTCGCTGGCGCGAGTAATTTGTACCGTATCGGCAGGCATTGGGATGAGCGCTCGCAGCATCCGCATCTCCAGGCGGCGAAAGTGCCGTTGCGCTTGCTGTGCCTGATGCGGATGCATGCCaa                             <  1:652813/139‑1 (MQ=255)                                                                                                                  ctTCCAGTT‑CGCGCCGGGCTTCCCTGGCGCGAGAAATTTTTACGGTATCGGCATGCATTGGGACGAGCTCTCGCAGCATCCGCATATCCAGGCGGCGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGc                           <  2:512324/143‑1 (MQ=255)                                                                                                                   ttCCGGTT‑CGCGTCGGGCTTCCCTGGCGCGAGAAATTTGTACGGTATCGGCATGCATTGGGATGAGCTCTCGCAGCATCCGCATATCCAGGCGGCGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCg                          <  1:673641/143‑1 (MQ=255)                                                                                                                    tCCAGTT‑CGCGTCGGGCTTCCCTGGCGCGAGAAATTTGTACGGTATCGGCATGCATTGGGATGAGCTCTCGCAGCATCCGCATATCCAGGCGGCGAAAATGCAGTTGCGCTCGCCGTGCCTGATGCGGATGCATGCCCAGCgg                         >  1:175533/1‑142 (MQ=255)                                                                                                                      cAGTT‑CGCGTCGGGCTTCCCTGGCGCGAGAAATTTGTACGGTATCGGCATGCATTGGGATGAGCTCTCGCAGCATCCGCATATCGAGGCGGCGGAAATGCAGTTGCGCTCGCTTGGCCCGGTGCCGGTGCATGCCAGGCggtg                       >  2:179096/1‑140 (MQ=255)                                                                                                                       aGTT‑CGCGTCGGGCTTCCCTGGCGCGAGAAATTTGTACGGTATCGGCATGCATTGGGATGAGCTCTCGCAGCATCCGCATATCCAGGCGGCGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGAc                      <  2:703549/143‑1 (MQ=255)                                                                                                                       aGTT‑CGCGTCGGGCTTCCCTGGCGCGAGAAATTTGTACGGTATCGGCATGCATTGGGATGAGCTCTCGCAGCATCCGCATATACAGGCGGCGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGCTGCATGCCAAGCGTGAc                      >  1:546677/1‑143 (MQ=255)                                                                                                                        gTT‑CGCGTCGGGCTTCCCTGGCGCGAGAAATTTGTACGGTATCGGCATGCATTGGGATGAGCTCTCGCAGCATCCGCATATCCAGGCGGCGATAATGCAGTTGCGCTCGCTGTGTCTGATGCGGatgcagtggcggcgtgagc                     >  1:747626/1‑129 (MQ=255)                                                                                                                                         ccTGGCGCGAGAAATTTGTACGGTATCGGCATGCATTGGGATGAGCTCTCGCAGCATCCGCATATCCAGGCGGCGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCCa     <  2:667665/143‑1 (MQ=255)                                                                                                                                            ggCGCGAGAAATTTGTACGGTATCGGCATGCATTGGGACGAGCTCTCGCAGCATCCGCACAGCAAAGCGGCGAACATGCACTTGCGCTCGCCGTGCATGAAGCGGATGCAAGCCCAACGTGACCAGCGTCGTGCGccaccggc  >  1:844391/1‑137 (MQ=255)                                                                                                                                             |                                                                                                                                              GCATTTTGCGCCCGCAATAAAACGTTTTCGGATTGCCATCTTTACCCTCTACTCAAATTCATCCCAGCCGTCCAGCTGGCGTCGTTCTTGTTGCATTTCACGCTGGAAAATCTCTTCCAGTT‑CGCGTCGGGCTTCCCTGGCGCGAGAAATTTGTACGGTATCGGCATGCATTGGGATGAGCTCTCGCAGCATCCGCATATCCAGGCGGCGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCCAGCT  >  NC_000913/3478752‑3479032

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.