Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 3,815,858 Δ82 bp [rph][rph] [rph], [rph]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 3815858 3815939 82 46 [0] [0] 45 [rph]–[rph] [rph], [rph]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 38158570 (0.000)42 (0.860) 34/264 0.4 100% pseudogene (24/48 nt) rph ribonuclease PH (defective),enzyme, Degradation of RNA, RNase PH
?NC_000913 3815940 = 0 (0.000)pseudogene (609/669 nt) rph ribonuclease PH (defective),enzyme, Degradation of RNA, RNase PH

CTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTC  >  NC_000913/3815720‑3815999
                                                                                                                                         |                                                                                                                                              
cTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTACAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcc                                                                                                                                           >  2:834247‑M1/1‑138 (MQ=255)
 tgcttgctAATCGCAAATTCAATAAACTTGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtccc                                                                                                                                          <  2:146940‑M1/143‑7 (MQ=255)
      gctAAGCGCAAATACAATAAACTGGCGCTGATATGGTTTAATGCCTTCGCTCCACATCTTACTAATCTAAAGACAAAAAAAAGGCGACTCATCACTCGAATAAAACACTAGTTCGCCAGCGCCGCCTTCTGccgtcccctgca                                                                                                                                     <  1:368846/143‑12 (MQ=255)
               aaaCTCACTAAACTCGCGCTGATATGCATTCATGCCGTCGCTCCTCATCTTACTTTTCTACATACAATACACAGGCCACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatga                                                                                                                            <  1:688767‑M1/143‑21 (MQ=255)
                 aTTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatg                                                                                                                          <  1:720357‑M1/143‑23 (MQ=255)
                    cagtagacgggcgcggatagGGTTGCGTGCCTTCGCTCGTCATCTTGCTTTTCAACGGACAAAAAAAAGGCGACTCATCAGTCGCGTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgc                                                                                                                       <  1:91570‑M1/134‑26 (MQ=255)
                    cAATAAACTGGCGCTGATATGGTTTCATCCCTGCGCTCCTCATCACACAAGTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgc                                                                                                                       <  2:514622‑M1/143‑26 (MQ=255)
                     aaTAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCCTCTTACTTTTCTACAGACAAAAACAACGCGCCTCCTCACTCGCCTTCAAAATCCGTTTGCCAGCGCCCCCTTCTGCcgtgccctgcacttcaatcatcgccc                                                                                                                      >  2:862044‑M1/1‑117 (MQ=255)
                              gagctgATATGGTTTCATGCCTTCGCTCCGCAACTCACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcgg                                                                                                             <  2:350568‑M1/141‑36 (MQ=255)
                                gatgctagggtttcctgcCTGCGCACCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACGCATCAGTCGCCTTAAAAATCAGTTGGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtc                                                                                                           <  2:292284‑M1/135‑38 (MQ=255)
                                           ttCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgtt                                                                                                <  2:75178‑M1/143‑49 (MQ=255)
                                           gtcctgcccTCGCGCCTCATCTTACTTTTCTACAGACAAACAAAAGGCGACTCCTCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgtt                                                                                                <  1:20838‑M1/139‑49 (MQ=255)
                                            tCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttc                                                                                               <  2:601800‑M1/143‑50 (MQ=255)
                                                 ccTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggacataactacgttcatgtc                                                                                          >  2:227736‑M1/1‑89 (MQ=255)
                                                   ttCGCTCCTCATCTTGCTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttccatcaagcccccctctccagtcctgactaccatcatgtccc                                                                                        >  1:768816‑M1/1‑87 (MQ=255)
                                                   ttCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgtccatgtcgg                                                                                        >  2:766831‑M1/1‑87 (MQ=255)
                                                               ctttctttTCTACTAACAAAAAAAAGTCTACTCTTCAGTCGCCTTAAAGATCAGTTTGCCAGCGCCGCCTGCTGCcgtcccctgcacgccaatgatgcgcccgtcttcgggcatcactacgttcatgtcggtctctgcggcag                                                                            <  2:266558‑M1/143‑69 (MQ=255)
                                                                 tACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatatcggtctctgcggcagag                                                                          >  1:342397‑M1/1‑73 (MQ=255)
                                                                    ttttCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCGGGcgacccctgcacttcaatgctgcgcacgtcttcggtcatcaatacgctcatgacggtctctgaggcagagtct                                                                       >  1:444564‑M1/1‑70 (MQ=255)
                                                                     tttCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcgaactccgccgcatagtctt                                                                      >  2:120837‑M1/1‑69 (MQ=255)
                                                                      ttCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAGAAATCAGTTTGCCAGCGCCGCCTTCTGCagtcccctgcacttcaatgatgcgcccggcttcggtcctcaccacgttcatgtcggtatctgcgtgagagtcttc                                                                     >  2:145224‑M1/1‑68 (MQ=255)
                                                                      ttCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttc                                                                     >  2:805541‑M1/1‑68 (MQ=255)
                                                                       tCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtctcca                                                                    >  1:262187‑M1/1‑67 (MQ=255)
                                                                        cTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaa                                                                   <  2:333549‑M1/143‑78 (MQ=255)
                                                                        cTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctccggcagagtcttcaa                                                                   <  1:771611‑M1/143‑78 (MQ=255)
                                                                            aGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatccctacgttcatgtcggtctctgcggcagagccttcaacgta                                                               >  1:204618‑M1/1‑62 (MQ=255)
                                                                            aGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgta                                                               >  2:166536‑M1/1‑62 (MQ=255)
                                                                             gACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgccggtctctgcggcagagccttcaacgtct                                                              >  1:445612‑M1/1‑61 (MQ=255)
                                                                              aCAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagccttcaacgtatt                                                             >  2:862234‑M1/1‑60 (MQ=255)
                                                                              aCAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgaccaggtcggcctctgcggcagagtcttcaacgtatt                                                             >  2:859553‑M1/1‑60 (MQ=255)
                                                                                aaaaaaaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgtaaagagcggtctctgcggcagagccttcaccgcatccc                                                           >  1:641605‑M1/1‑58 (MQ=255)
                                                                                 aaaaaaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattcca                                                          <  2:518752‑M1/143‑87 (MQ=255)
                                                                                 aaaaaaaGGCGACTCATCAGTAGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcctcggtcatcactacgctcatgtcggtctctgcggcagagtatacaacgtattcca                                                          >  1:563000‑M1/1‑57 (MQ=255)
                                                                                  aaaaaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagcgcgttcaacgtgtgccag                                                         >  2:352799‑M1/1‑56 (MQ=255)
                                                                                        ggCGACTGATGAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcgggctctgcggcagagcattccacgtcttccagagcgca                                                   >  2:93944‑M1/1‑50 (MQ=255)
                                                                                          cGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagcgtcttcaccgtattccatatcgcaaa                                                 >  1:727206‑M1/1‑48 (MQ=255)
                                                                                                atcaGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtatcccagaccgcaaaccgccc                                           >  1:608181‑M1/1‑42 (MQ=255)
                                                                                                  caGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcg                                         <  2:138586‑M1/143‑104 (MQ=255)
                                                                                                  caGTCGCCTTAAAAACCAGTTTGCCAGCGCCGCCTTCCGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggacgagtcttcaatgtattccagatcgcaaaccgcttcg                                         <  2:473032‑M1/143‑104 (MQ=255)
                                                                                                    gTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccatgcacttcaatgatgcgcccgtcttccgtcatcactccgttcatgccggtctctgcggcagagtctgcaacgtattccagaacgcaaaccgcttcgcc                                       >  1:31299‑M1/1‑38 (MQ=255)
                                                                                                               aaTCAGTTGGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtcgctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattc                            <  2:9201‑M1/143‑117 (MQ=255)
                                                                                                                   aGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgac                        <  1:341148‑M1/143‑121 (MQ=255)
                                                                                                                               ccgccTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccggcagaaactgcggc            >  2:873635‑M1/1‑11 (MQ=255)
                                                                                                                                 gccTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggcta          <  1:166536‑M1/143‑135 (MQ=255)
                                                                                                                                       tGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggctaccatcc    <  2:400303‑M1/143‑141 (MQ=255)
                                                                                                                                         ccgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggctaccatccct  <  2:60087‑M1/143‑143 (MQ=255)
                                                                                                                                         |                                                                                                                                              
CTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTC  >  NC_000913/3815720‑3815999

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: