New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	702318 =	101 (0.790)	5 (0.040)	5/510	NT	3.7%	coding (434/1149 nt)	nagA	N‑acetylglucosamine‑6‑phosphate deacetylase
	?	NC_000913	4502091 =	158 (1.240)					intergenic (+501/+13)	yjgZ/insG	uncharacterized protein/IS4 transposase

TCGATGTGCAGTTAAACGGCTGCGGCGGCGTACAGTTTAACGACACCGCTGAAGCGGTCAGCGTGGAAACGCTGGAAATCATGCAGAAAGCCAATGAG‑AAATCAGGCTGTACTAACTATCTGCCGACGCTTATCACCACCAGCGATGAGCTGATGAAACAGGGCGTGCGCGTTATGCGCGAGTACCTGGCAAAACATCCGAATCAGGCGTTAGGTCTGCATCTGGAAGGTCCGTGGCTGAATCTGGTAAAAAAAGGCACCCATAATCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/702585‑702318 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTTACCACT  >  NC_000913/4502091‑4502167                                                                                                                                                                                                                                                                                                                                                            TCGATGTGCAGTTAAACGGCTGCGGCGGCGTACAGTTTAACGACACCGCTGAAGCGGTCAGCGTGGAAACGCTGGAAATCATGCAGAAAGCCAATGAG‑AAATCAGGCTGTACTAACTATCTGCCGACGCTTATCACCACCAGCGATGAGCTGATGAAACAGGGCGTGCGCGTTATGCGCGAGTACCTGGCAAAACATCCGAATCAGGCGTTAGGTCTGCATCTGGAAGGTCCGTGGCTGAATCTGGTAAAAAAAGGCACCCATAATCCTAATGCCAGTCAGTTAAGCAA                                                          <  1:864264/289‑1                                aaAGTTTAACGACACCGATGAAGCGGTCGGCGTGGAAACGCTGGAAATCATGCAGAAAGCCAATGAG‑AAATCAGGCTGTACTAACTATCTGCCGACGCTTATCACCACCAGCGATGAGCTGATGAAACAGGGCGTGGGCGTTATGCGCGAGTACCTGGCAAATCATCCGAATCAGGCGTTGGGTCTGCATCTGGAAGGTCCGTGTCTGAATCTGGTAAAAAAAGGCACCCATAATCCTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGT                            <  1:562077/286‑1                                                                        nttGAAATCTGGCAGAANGCC‑ANGAGCAAAGCAGTCTTGACGAACTATCTGCCAGAGCTTGTCACCACCAGCGATGAGCTGAGGAAACAGGGCGTGCGCGTTATGCGCGAGTACCTGGCAAAACATCCGAATCAGGCGTTAGGTCTGCATCTGGAAGGTCCGTGGCTGAATCTGGTAAAAAAAGGCACCCATAATCCTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTTAC      <  2:556012/267‑1                                                                                                                                                                      GTGCGCGTTATGCGCGAGTACCTGGCAAAACATCCGAATCAGGCGTTAGGTCTGCATCTGGAAGGTCCGTGGCTGAATCTGGTAAAAAAAGGCACCCATAATCCTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTTACCACT  >  1:534028/1‑181                                                                                                                                                                      GTGCGCGTTATGCGCGAGTACCTGGCAAAACATCCGAATCAGGCGTTAGGTCTGCATCTGGAAGGTCCGTGGCTGAATCTGGTAAAAAAAGGCACCCATAATCCTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTTACCACT  <  2:534028/181‑1                                                                                                                                                                                                                                                                                                                                                            TCGATGTGCAGTTAAACGGCTGCGGCGGCGTACAGTTTAACGACACCGCTGAAGCGGTCAGCGTGGAAACGCTGGAAATCATGCAGAAAGCCAATGAG‑AAATCAGGCTGTACTAACTATCTGCCGACGCTTATCACCACCAGCGATGAGCTGATGAAACAGGGCGTGCGCGTTATGCGCGAGTACCTGGCAAAACATCCGAATCAGGCGTTAGGTCTGCATCTGGAAGGTCCGTGGCTGAATCTGGTAAAAAAAGGCACCCATAATCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/702585‑702318 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTTACCACT  >  NC_000913/4502091‑4502167

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.