New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1207805	43 (1.020)	7 (0.190)	7/252	3.8	14.7%	coding (305/630 nt)	stfP	e14 prophage, uncharacterized protein
	?	NC_000913	= 1209602	43 (1.150)					pseudogene (18/501 nt)	stfE	pseudogene, e14 prophage, side tail fiber protein fragment family,Phage or Prophage Related
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGAT  >  NC_000913/1207672‑1207944                                                                                                                                      |                                                                                                                                            cTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGGTTGGGAGAAGGAGCAAACCt                                                                                                                                    >  1:40136/1‑143 (MQ=255)  gcgagaAGGGGCGGCAGGACCAGTTACTTACCGGACTTCGCGCGCAGCTGTCACGTTGCAAGAATCCGTTTGGGGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAggctctgcatta                                                                                                                                   <  2:83200/141‑11 (MQ=17)    gagaAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCACACGGCTCTCGAAAACCTTGGGTTGGGAGAAGGGGCAAGACGCaa                                                                                                                                 >  1:210829/1‑143 (MQ=18)    gagaAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTGGGGAGAAGGAGCAAGACTCaa                                                                                                                                 >  1:210603/1‑143 (MQ=255)        aGGCGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGGGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATgca                                                                                                                             <  2:425974/143‑1 (MQ=255)            gcggcACGACCAGTTACTTACCGCACTTCGAGCGCTGCCGTTAAGCCGCACGAATACGCTTGGCGATCTCAACGCTGACGGCACTGTGCAAACCGCCATAGAAAAACATTGTTTTGAAGATAGAACAACCATCAATgcagcca                                                                                                                         >  2:690313/1‑141 (MQ=255)                      cAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGACTCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACAtt                                                                                                               <  1:332962/143‑1 (MQ=255)                       aGTTACTTACCGCATTTTGCGCCCTGCTGTTAAGCCGCAATGATCCGTTTGGCCATATCAAATCGGATGTCACTGTGCATACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAATCTCAATGCAGCAACGGCTACATTa                                                                                                              <  2:92397/143‑1 (MQ=21)                         tgacttacCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGGGCAAAACTCAATGCAGCAACGGCTACATTAgg                                                                                                            <  1:511549/141‑1 (MQ=255)                           acttacCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGCAGGAGCAAAACTCAATGCAGCAACGGCTACCTTAGCAc                                                                                                          >  2:16791/1‑143 (MQ=255)                            cttacCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACg                                                                                                         <  2:550309/143‑1 (MQ=255)                                 tggaCTTCGCGCGCTGCTGTTTAGCCGCAACAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCg                                                                                                    <  2:366941/140‑1 (MQ=255)                                 cGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCACCGGCTACATTAGGACGCACCg                                                                                                    >  2:413145/1‑143 (MQ=255)                                  gCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCgg                                                                                                   >  1:284401/1‑143 (MQ=255)                                   cACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCGAAACTCAATGCAGCCACGGCTACATTAGGACGCACCggg                                                                                                  >  2:571818/1‑142 (MQ=255)                                      ttCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAACCGGCTCTCGAAACCCTTGGGTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATGAGGACGCACCGGTTTc                                                                                               >  2:694603/1‑143 (MQ=255)                                      ttCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCTAAAACCTTGGCTTGGGAGAACGAGCAAAACTCACTGCACCAACAGCTACATTAGGACGCGCCGGttcc                                                                                               >  2:576225/1‑141 (MQ=21)                                            cgcgGCTGTTAAGCCGCAAGAACCCGTTTGTCGTTATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGCGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCt                                                                                         <  2:573662/143‑1 (MQ=37)                                                   gTTAAGCCGCTAGAATCCGGTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCgg                                                                                  <  1:259941/143‑1 (MQ=255)                                                   gTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCgg                                                                                  <  1:411898/143‑1 (MQ=255)                                                      aggccgccGGAATCCGTTTGGCGACATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTGGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTa                                                                               <  2:618669/141‑1 (MQ=255)                                                            cAAGACGCCGTTTGGCGAGATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATtg                                                                         <  1:469310/143‑1 (MQ=255)                                                                   ccGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTAt                                                                  >  1:305267/1‑143 (MQ=255)                                                                      tgtGGCGATGTGAATTCGGATGGCACTGTGCAAACGGCTCTCGAAAGCCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGa                                                               <  2:722075/141‑1 (MQ=255)                                                                         ggCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAACACTCAATGCAGCGACGGCTACATTAGGACGCACCGGTTTCATAGCTAGACCAGATATGACTGGCGGTATTGAGcg                                                            >  2:32314/1‑142 (MQ=37)                                                                           cgacagcAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTGGGGAGAAGGAGCAAAACGCAATGCAGCCACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAAt                                                          <  1:645653/137‑1 (MQ=39)                                                                            gagatCAAATCGGATGGCACTGGGCAAACGGCTCCCGAAAACCTGGGTTTGGGAGAAGTCGCAAAACGCAATGCAGCCACGGCTACATTAGGACGCACCGGGTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATc                                                         <  1:640080/140‑1 (MQ=255)                                                                              tatCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAGCATTCGTTCAGGAGAAGCCGAAAACCTCAATGCAGCAACGGCTACATTAGGACGCACCGGCGTCCGTACTATACCGGTTATGATTGGTGGTATTGAGCAATCAg                                                       <  2:554350/143‑1 (MQ=255)                                                                                             gaCTGGGCAAACGGCTCCCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTggg                                        <  1:32822/142‑1 (MQ=255)                                                                                             cACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTAGTGAGCAATCAGGAGTCATTCAGTggg                                        >  1:47608/1‑143 (MQ=255)                                                                                              aCTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCCATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGGGGTATTGAGCAACCAGTAATCATTCAGCgggg                                       >  2:485771/1‑143 (MQ=255)                                                                                                  tgCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCAGTTATGATTGGTGGGATTGAGCAATAAGTAATCATTCAGTGGGGGTgg                                   >  2:377539/1‑143 (MQ=255)                                                                                                     aaaCGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTaa                                                    <  2:147088/123‑1 (MQ=255)                                                                                                     aaaCGGCTCTCGAAAACCTTGGTTGGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTaa                                                    >  1:147088/1‑123 (MQ=255)                                                                                                            tctcGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGGTATGATTGGTGGTATTGAGCAAGCAGTAATCATTCCGTGGGGGTGGCATTCCGCaa                         >  2:221537/1‑143 (MQ=255)                                                                                                             ctcGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCaaa                        >  2:657108/1‑143 (MQ=255)                                                                                                             ctcGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTACGACGAACCGGTCTCATAGCTATACCGGCTATGATTGGTGGTATTGCGCAATCAGTAATCATTCAGTAAGGGTGGCATGCCGCcaa                        >  2:456152/1‑143 (MQ=255)                                                                                                              tcGCAAACCTTGGTTCCGGAGACGGAGCAAACCCCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCaaaa                       <  1:16791/143‑1 (MQ=255)                                                                                                                  aaaCCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCAt                   <  2:305267/143‑1 (MQ=255)                                                                                                                           tttGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTg          >  1:327382/1‑143 (MQ=255)                                                                                                                             tGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTggg        <  1:512565/143‑1 (MQ=255)                                                                                                                               ggAGAAGTGGCACAACTCAATGCGGCAACGGCTACATTAGGACGCACCGGTTTCAGAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTggggg      <  2:553055/143‑1 (MQ=255)                                                                                                                                 agaAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTggggggg    >  1:360607/1‑143 (MQ=255)                                                                                                                                   gaGGAGCAAAACGCAAGCGAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGAt  <  2:130443/142‑1 (MQ=255)                                                                                                                                      |                                                                                                                                            CTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGAT  >  NC_000913/1207672‑1207944

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.