New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 120780543 (1.020)7 (0.190) 7/252 3.8 14.7% coding (305/630 nt) stfP e14 prophage, uncharacterized protein
?NC_000913 = 1209602 43 (1.150)pseudogene (18/501 nt) stfE pseudogene, e14 prophage, side tail fiber protein fragment family,Phage or Prophage Related
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACG  >  NC_000913/1209460‑1209740
                                                                                                                                              |                                                                                                                                          
aaTCAGGCAATTTATGTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCagag                                                                                                                                            <  1:667389/143‑1 (MQ=255)
 aTCAGGCAATTGATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGc                                                                                                                                           <  2:373862/143‑1 (MQ=255)
  tCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGcc                                                                                                                                          >  2:534697/1‑143 (MQ=255)
  tCAGGCAATTTACTTGTCGGATAAGCCTTTCCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCCGCCAGCCTGTTGGCGGATTGGCTGAAGGCCACGGAACCGGGACACCAACAGTTAATGCAGAGcc                                                                                                                                          <  1:398636/143‑1 (MQ=255)
      gCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTtct                                                                                                                                      >  2:375098/1‑143 (MQ=255)
       ctatttatttGTCGTATAAGTCTTTGCCTGTTCCGGGTATTCGTGAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTtctc                                                                                                                                     <  1:23245/141‑1 (MQ=255)
             atttGTCGGAGAAGCCTTTGCCAGTTCCGGGTAGTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAAc                                                                                                                               <  2:425427/143‑1 (MQ=255)
                 gTCGGATCAGCCTTGGCCGGTGCCGGGTGTTCTTCAGGAGAGAAAGCGGCACCAGTGCATTTCAGCCAGGCGGGTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCGTTCTCCCAGACCAAc                                                                                                                           <  2:616828/143‑1 (MQ=255)
                          gcctataacAGTTCCGGGGAGTCTTCAGAAGAAAAAGCGGCACCACTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAAGGttttcgag                                                                                                                  <  1:391367/135‑6 (MQ=255)
                            cTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGaaaa                                                                                                                >  1:441125/1‑143 (MQ=255)
                            cTTCGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATCTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGaaaa                                                                                                                <  1:1230/143‑1 (MQ=255)
                             tttGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAAt                                                                                                               <  2:280218/143‑1 (MQ=255)
                              ttGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATg                                                                                                              >  2:240221/1‑143 (MQ=255)
                               tGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATga                                                                                                             <  1:470641/143‑1 (MQ=255)
                                 ccAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATgaag                                                                                                           <  2:289832/143‑1 (MQ=255)
                                  cAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATgaaga                                                                                                          <  1:476939/143‑1 (MQ=255)
                                          ggTATTCTTCAGCGGAACGGGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACaa                                                                                                  <  2:344736/143‑1 (MQ=255)
                                           gTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACaat                                                                                                 >  1:339766/1‑142 (MQ=255)
                                                 ttcAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATg                                                                                           <  1:624467/143‑1 (MQ=255)
                                                 ttcAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGATGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACACACGGTTATGAAAATGAAGAAATAACAAGCaaagg                                                                                           >  2:673250/1‑141 (MQ=255)
                                                      cagAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGcatc                                                                                      >  1:642206/1‑143 (MQ=255)
                                                         aaaaaGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGCCACCAACCGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCAtt                                                                                   >  1:540158/1‑143 (MQ=255)
                                                           aaaGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGGAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCAttgc                                                                                 >  1:631223/1‑141 (MQ=255)
                                                                   aCCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAGATAACAAGCAAATGGCATCATTCCTGCTCTTa                                                                         >  1:509079/1‑143 (MQ=255)
                                                                   aCCATAGCATTGCAGCCAGCCTGTTGGCGGAGGGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTa                                                                         <  1:242364/143‑1 (MQ=255)
                                                                       ttGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAg                                                                     >  1:692869/1‑143 (MQ=255)
                                                                        tGCATCTCAGCCAGCCTGTTGGCCGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCGAACCAACGTTTATGAAAATGAAGAAATAACAAGCACATGGCATCATTCCTGCTTTTACCAgg                                                                    <  1:185952/143‑1 (MQ=255)
                                                                         gCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAggg                                                                   <  2:646416/143‑1 (MQ=255)
                                                                            tttCAGCCAGCCTGTTGGCGGAGTGGCTAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGag                                                               >  2:130951/1‑142 (MQ=255)
                                                                                   cagccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAACTGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTACCa                                                         >  1:242589/1‑143 (MQ=255)
                                                                                   cagccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTCATGAAAAGGAAGAAATAACAAGCAAAAGGCATCACTCCTGATTTTACCAggggacacgaacc                                                         >  2:698318/1‑134 (MQ=255)
                                                                                   cagccTGGTTGCGGAGTGTCTGAATGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTTCTTATGCTACTTTTATGAATTGTAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACa                                                         <  2:258186/143‑1 (MQ=255)
                                                                                        ggTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCtt                                                    <  1:202225/142‑1 (MQ=255)
                                                                                           tGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTAtt                                                 <  2:441125/143‑1 (MQ=255)
                                                                                             gCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTgg                                               >  1:354557/1‑143 (MQ=255)
                                                                                             gCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAAGAGCAGCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTgg                                               >  2:320754/1‑143 (MQ=255)
                                                                                               ggAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTCTATGAACATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGCGGGATTTACCATGCTTATTGGCt                                             >  2:78907/1‑143 (MQ=255)
                                                                                                       cgAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTAcgc                                     <  1:323469/142‑1 (MQ=255)
                                                                                                          aGGTCACTGAAACGAGAAACTAACAGGTAATGAAGATACTTCACCCAAATTAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGATTATTGGCTATGTACGCGTa                                  <  2:258967/143‑1 (MQ=255)
                                                                                                          aGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTa                                  <  2:315412/143‑1 (MQ=255)
                                                                                                               aCGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGAGGAGTTAACAAGCTTATTGGATATGTAcggcgagcaac                             >  2:165105/1‑134 (MQ=255)
                                                                                                                cGGATCCGGCAGACCAAGAGGTAATGCAGAGCCGTCGCACAAACCAACGTTTATGAAAACGAAGAAATAACAAGCTAATGGCATCATTCCTGCTTTTACCAGGGGGATTTACCATGCTTATTGGCTATGTACGCGTATcaaca                            <  2:359899/143‑1 (MQ=255)
                                                                                                                   caCCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAGCATGCTTATTGGCTATGTACGCGTATCAACAAAt                         <  1:638899/142‑1 (MQ=255)
                                                                                                                           cacCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGAATTTAATTTGCTTTTTGGCTATGTACGCGTATCAACAAATGACCAGaa                 <  1:375788/143‑1 (MQ=255)
                                                                                                                              cAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAacac              >  1:8108/1‑143 (MQ=255)
                                                                                                                               aaCAGGTAATGCAGAGCCTTCTCCCAAACCAACGTATATGAAAATGAAGAAATAACAAACAAATGGCATCATTCCTGCTTTTACCAAGGGGAATTAACAGGCCTATTTCATATTTACACCCATCAACACATGGccgcaaaaca             >  2:512235/1‑135 (MQ=255)
                                                                                                                                    gTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCt        >  2:187694/1‑143 (MQ=255)
                                                                                                                                     tAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATATAACACGCTTATTGTCGATGTACGCGTATCAACAAATGACAAGAACACAgcacta       >  2:287798/1‑138 (MQ=255)
                                                                                                                                      aaTGGAGGGCGTTCGCCGAGACCAACGTTTATGAAAACAAACAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTAc      <  1:303319/143‑1 (MQ=255)
                                                                                                                                          ccgagCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAGCAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACg  <  2:7969/141‑1 (MQ=255)
                                                                                                                                          cAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACg  >  2:215669/1‑143 (MQ=255)
                                                                                                                                              |                                                                                                                                          
AATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACG  >  NC_000913/1209460‑1209740

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.