New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	458787 =	5 (0.120)	32 (0.780)	29/278	0.4	86.7%	intergenic (+87/‑101)	clpX/lon	ATPase and specificity subunit of ClpX‑ClpP ATP‑dependent serine protease/DNA‑binding ATP‑dependent protease La
	?	NC_000913	608011 =	NA (NA)					intergenic (+23/‑54)	hokE/insL1	toxic polypeptide, small/IS186 transposase

CTGTGTTTAACGGTGCTGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTT  >  NC_000913/607872‑608134                                                                                                                                            |                                                                                                                            cTGTGTTTAACGGTGCTGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATaa                                                                                                                          <  2:650454/143‑1 (MQ=255) cTGTGTTTAACGGTGCTGGGATCTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATaa                                                                                                                          <  2:582338/143‑1 (MQ=255)        ccaCGGCGCTGGGATTTCCGCTTGTGGTCGGTGTCTTGCTGTGTGAGTTTACGGTGAAGGAACGTAAGATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTaa                                                                                                                   <  2:184288/141‑1 (MQ=255)         aaCGGTGCTGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAACATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGGAGCCGTGGTGCGGGGCGTAACCCCATacacgccaaa                                                                                                                  >  2:683013/1‑134 (MQ=255)             gTGCTGGGATTTACGCGTCTGGGCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGATCGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTaa                                                                                                              <  2:373147/143‑1 (MQ=255)              tGCTGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAg                                                                                                             >  1:443103/1‑143 (MQ=255)                     agttACGGTTCTGGTCGGAGATTCGCTGTGTGAGTTGACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTtgtg                                                                                                      <  2:238289/141‑1 (MQ=255)                           gCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCGCATAAGCGCTAAGTTAAGGGATGTGGTATTa                                                                                                >  1:337023/1‑143 (MQ=255)                             ttCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTCACTTAAGGGTTGTGGTATTACg                                                                                              >  2:299664/1‑143 (MQ=255)                              ggtGGGCGGAGACTCGCTGTGTGAGTTTACGGTGACGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAACAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGc                                                                                             <  1:277714/141‑1 (MQ=255)                               cTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGcc                                                                                            >  1:429152/1‑143 (MQ=255)                                tGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCt                                                                                           <  1:605331/143‑1 (MQ=255)                                 ggggggAGGCGCGCGGTGGGAGTTTGCGGTGAAGGAATGTAAGATTGAGTTTAAGGCTGTGCTCGCTTACGAACCGAAGAAGTAGCCGTGGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTg                                                                                          <  2:283319/139‑1 (MQ=37)                                         ccTCGCTGTGTGAGTTAACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGAtt                                                                                  <  1:450570/142‑1 (MQ=255)                                                   tgAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACTGAAGAGGTAGCAGGTGTGCGGGGAGTAATCCCATAAGCGCTAACTTACGGGTTGTGGTGTTGCGCCTCAAATGActtcccaatctt                                                                        >  1:331251/1‑134 (MQ=255)                                                       tttACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGATTACGAACCGAAGAAGTAGCCGTTGTGCGGGGCGTAACCCCATAAGAGCTAACTGCGGGGTTGTGGTATTACGCCTGATCTGATTTACCGTACCGATGa                                                                    >  2:672015/1‑143 (MQ=37)                                                       gttACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGa                                                                    <  1:545156/142‑1 (MQ=255)                                                        tgaCGGTGAAGGAACGTAAGATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGaa                                                                   <  2:35587/141‑1 (MQ=255)                                                            ggTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGAGTTAACGTGCCGAGGAAttcc                                                               >  2:585010/1‑141 (MQ=255)                                                             gggAAGGAACGTAAGATTGAGTTTAAGGCTGTGCGCGCTTACGAACCGAAGAAGTAGCCGGTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACCCCTGATATGATTTAACGTGCCGATGAATTAct                                                              <  2:20392/141‑1 (MQ=25)                                                              tGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGATGTGGTGTTACGCCGGCTATGATTTAACGTGCCGAGGAAGGActc                                                             >  2:626518/1‑143 (MQ=37)                                                                  ggAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCAc                                                         <  2:367065/143‑1 (MQ=255)                                                                   gAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGGAGCCGTTGTGCGGGGCGTAGTCCCATAAGCGCTAACTTAAGGGGTGTGGGAGTGCGCCTGCTAGGGTGTGACGTGCCGATGAATTCCgctccgg                                                        >  2:653939/1‑140 (MQ=25)                                                                             ttGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGTGGGGAGTAATCCCATACGCGCTCACTTAAGGGTTGTGGTATTACGCCTCATATGCTTTAACGTGCCCATGACTTACTCTCACGATAACTGGTc                                              >  2:79316/1‑143 (MQ=25)                                                                               gAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGANGTAGCCGTAGTGCGGGGCGTAATCCCATAAGGNCTAACTGAAGGGATGTGGGATTACGCCTGNAATGATTCAACGTGCCGATGAATTACTCACAAGATAACTGATCAg                                            >  2:451405/1‑143 (MQ=255)                                                                                  tttAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCaa                                         >  1:645039/1‑143 (MQ=255)                                                                                       ggCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTCACTTAAGGGTTGTGGTGTTACGCCTGATATGGTTTAACGTGCCGCTGTATTAGTCGCACGATAGCTTGTCGGCAATCCtc                                    >  1:86295/1‑142 (MQ=255)                                                                                         ttgtctgcGCTTACGATCCGAAGACGTAGCCGTTGTGCGGGGAGTAAGCCCATAAGCGCTAACTTAAGGGTTGCGGTATTACGCCTCATATGATTTAACGTGCCGATGAATTACTCTCACGCTAACTGGTCAGCAATTCTGGc                                  <  2:197890/136‑1 (MQ=17)                                                                                         cTGTTCTCGCTGACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATAACTCTCACGATAACTGGTCAGCAATTCTGGc                                  <  2:195215/143‑1 (MQ=255)                                                                                                           cGAAGAGGTAGCCGTGGTGCGGGGAGTAATCCCATAAGCGCTGACTTAAGGGTGG‑GGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCgaa               <  1:199128/143‑1 (MQ=14)                                                                                                            gaagaaGGAGCCGTGGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCgaa               <  2:658477/143‑1 (MQ=255)                                                                                                            caagtagTAGCCGTTGTGAGGGGAGTAATCCCATAAGCGCTAACTTATGGGTTGTGGTATTTCGCCTGATATGATTTAACGTGCCGATGAATTACGCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCgaa               <  2:11426/142‑1 (MQ=14)                                                                                                                 tacatcagatagtcGGGGAGTATTCACATAATCACTGACTTAATGGTTGTGTTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACTATATCTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACt          <  2:596105/130‑1 (MQ=11)                                                                                                                 agTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACt          <  2:442311/143‑1 (MQ=255)                                                                                                                   tAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTCAGCCCGCAGAACTgg        >  1:593417/1‑143 (MQ=255)                                                                                                                    aGCCGTTGTTCGGGGAGTAATCCCATAAGCGCTTGAGCAAGTGTTGTAGTATTACGCTTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGa       <  2:512687/143‑1 (MQ=14)                                                                                                                     gCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAAATGGTCAGCAATTCTGGCCCATATTGGTAAGGCCGAAGAACTGGAt      >  2:409258/1‑143 (MQ=255)                                                                                                                         ttGTGCGGGGAGTAATCCCATAAGCGCTAAATTAAGCGATGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGCTAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAACAACTGGATACtt  >  2:599323/1‑143 (MQ=14)                                                                                                                                            |                                                                                                                            CTGTGTTTAACGGTGCTGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTT  >  NC_000913/607872‑608134

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.