New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 258675NA (NA)29 (1.040) 26/284 0.1 100% intergenic (+776/‑1) crl/crl pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers/pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers
?NC_000913 1309435 = 0 (0.000)coding (835/1254 nt) kch voltage‑gated potassium channel

GTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/258542‑258675
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CATCTTCAGGCAAGTTGCTGATAACCGTTACGTTTTGTCCGCGTTGATTCAGTTGCAGGATCGTATTGATGGCGAGAATCGAATGTCCGCAAACAATAAAATGATCTTTACGATGCATTGTATGATTGTTTCCTTTT  >  NC_000913/1309435‑1309571
                                                                                                                                                                                                                                                                               
GTCCGGCGTTGCTTTTGTCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATCTTCAG                                                                                                                                  <  2:116644/143‑1
GTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGATGAACAGGAGGGACAGCTGATAGAAACAGAAGCGACTGGAGCCCCTCAAAAACACCATAATACACTAAATCAGTACATTGGCAGCATCCCCCATCTcccg                                                                                                                                  >  2:192483/1‑139
         TGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATCTTCAGGCAAGTTGC                                                                                                                         >  2:370481/1‑143
                  CGTTACGCACCACCCCGGCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATCTTCAGGCAAGTTGCTGATAACCG                                                                                                                <  2:399073/143‑1
                             ACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATCTTCAGGCAAGTTGCTGATAACCGTTACGTTTTGT                                                                                                     <  2:309168/143‑1
                             ACCCCGTCAGTAGCAGAAGAGGATTGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATCTTCAGGCAAGTTGCTGATAACCGTTACGTTTTGT                                                                                                     <  2:76049/143‑1
                               CCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTACGTCGGCAGCATCACCCACCTTCAGGTAACTTGCTGATACCCGTTACGccagctac                                                                                                   >  2:478849/1‑135
                                  GTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATCTTCAGGCAAGTTGCTGATAACCGTTACGTTTTGTCCGCG                                                                                                >  1:398561/1‑143
                                   gCAGTAGCTGAACAGGAGCGCCCGCTGACAGCAGCAGAAGCCACTCGAGCACCTCAAAAACACCATCATACACTAGATCAGTAAGTTGGCAGCATCACCGTTCTTCAGGCAAGTTGCTGATAACCGTTACGTTTTGTCCGCGT                                                                                               <  2:265560/142‑1
                                          CTGAACAGGAGGGACAGCTGATAGAATCAGAAGCCACTGGAGCACCTCAAAAACCCCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATCTTCAGGCAAGTTGCTGATAACCGTTACGTTTTGTCCGCGTTGATTCA                                                                                        <  2:200735/143‑1
                                           aGAACAGGATGGAAAGATGATAGAAACAGAAGCCAATGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATCTTCAGGCAAGTTGCTGATAACCGTTACGTTTTGTCCGCGTTGATTCAG                                                                                       <  2:24515/142‑1
                                           TGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATCTTCAGGCAAGTTGCTGATAACCGTTACGTTTTGTCCGCGTTGATTCAG                                                                                       <  1:54054/143‑1
                                                     cGACAGCTGATAGAAACAGAAGCCCCTGGATCACCTCAAAAACACCACCATACACTAAATCAGTAAGTTGGCAGCATCACCCATCTTCAGGCAAGTTGCTGATAACCGTTACGTTTTGTCCGCGTTGATTCAGTTGCAGGATC                                                                             <  1:302519/142‑1
                                                        gAGCTGATGGAAACAGAGGCGAGTGGAGCACCTCAAAGACACCATCAGACACGAAATCAGTAAGTGGGCAGCATCACCCATCTTCAGGCAAGTTGCTGATAACCGTTACGTTTTGTCCGCGTTGATTCAGTTGCAGGATCGTA                                                                          <  1:98913/142‑1
                                                          cCTGATACAAACAAAAGCCCCTGTAGCACCTCAAAAACACGATCATACACTAAATCAGTAAGTGGGCAGCATCACCCCTCTTCAGGCAAGTTGCTGATAACCGTTACGTTTTGGCCGCGTTGATTCAGTTGCAGGATCGTATT                                                                        <  2:289594/142‑1
                                                           CTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATCTTCAGGCAAGTTGCTGATAACCGTTACGTTTTGTCCGCGTTGATTCAGTTGCAGGATCGTATTG                                                                       >  1:436145/1‑143
                                                            TGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATCTTCAGGCAAGTTGCTGATAACCGTTACGTTTTGTCCGCGTTGATTCAGTTGCAGGGTCATATTGA                                                                      >  1:57838/1‑143
                                                                AGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATCTTCAGGCAAGTTGCTGATAACCGTTACGTTTTGTCCGCGTTGATTCAGTTGCAGGATCGTATTGATGGC                                                                  <  1:114411/143‑1
                                                                  AAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATCTTCAGGCAGGTTGCTGATAACGGTTACGTTTTGTCCGCGTTGATTCAGTTGCAGGATCGTATTGATGGCGA                                                                <  1:132696/143‑1
                                                                    ACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATCTTCAGGCAAGTTGCTGATAACCGTTACGTTTTGTCCGCGTTGATTCAGTTGCAGGATCGTATTGATGGCGAGA                                                              <  1:347535/143‑1
                                                                        AAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATCTTCAGGCAAGTTGCTGATAACCGTTACGTTTTGTCCGCGTTGATTCAGTTGCAGGATCGTATTGATGGCGAGAATCG                                                          <  1:415316/143‑1
                                                                             ACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATCTTCAGGCAAGTTGCTGATAACCGTTACGTTTTGTCCGCGTTGATTCAGTTGCAGGATCGTATTGATGGCGAGAATCGAATGT                                                     <  1:41320/143‑1
                                                                                                  CATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATCTTCAGGCAAGTTGCTGATAACCGTTACGTTTTGTCCGCGTTGATTCAGTTGCAGGATCGTATTGATGGCGAGAATCGAATGTCCGCAAACAATAAAATGATCT                                <  1:370481/143‑1
                                                                                                  CATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATCTTCAGGCAAGTTGCTGATAACCGTTACGTCTTGTCCGCGTTGATTCAGTTGCAGGATCGTATTGCTGGCGAGAATCGCATGTCCGCCAGCAATAAACTGATCT                                >  2:113267/1‑143
                                                                                                            TAAATCAGTAAGTTGGCAGCATCACCCATCTTCAGGCAAGTTGCTGATAACCGTTACGTTTTGTCCGCGTTGATTCAGTTGCAGGATCGTATTGATGGCGAGAATCGAATGTCCGCCAACAATAAAATGATCTTTACGATGCA                      >  1:259056/1‑143
                                                                                                             AAATCAGTAAGTTGGCAGCATCACCCATCTTCAGGCAAGTTGCTGATAACCGTTACGTTTTGAACGCGTTGATTCAGTTGCAGGATGGTATTGATGGCGAGAATCGAATGTCCGCAAACAATAAAATGATCTATACGGTGCAT                     >  1:197444/1‑143
                                                                                                                    TAAGTTGGCAGCATCACCCATCTTCAGGCAAGTTGCTGATAACCGTTACGTTTTGTCCGCGTTGATTCAGTTGCAGGATCGTATTGATGGCGAGCATCGCATGGCCGCAAACAATAAAATGATCTTTAACATGCATTGTCTGg              >  2:269386/1‑142
                                                                                                                    TAAGTTGGCAGCATCACCCATCTTCAGGCAAGTTGCTGATAACCGTTACGTTTTGTCCGCGTTGATTCAGTTGCAGGATCGTATTGATGGCGAGAATCGAATGTCCGCAAACAATAAAATGATCTTTACGATGCATTGTATGA              >  1:40939/1‑143
                                                                                                                                ATCACCCATCTTCAGGCAAGTTGCTGATAACCGTTACGTTTTGTCCGCGTTGATTCAGTTGCAGGATCGTATTGATGGCGAGAATCGAATGTCCGCAAACAATAAAATGATCTTTACGATGCATTGTATGATTGTTTCCTTTT  <  1:41662/143‑1
                                                                                                                                                                                                                                                                               
GTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/258542‑258675
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CATCTTCAGGCAAGTTGCTGATAACCGTTACGTTTTGTCCGCGTTGATTCAGTTGCAGGATCGTATTGATGGCGAGAATCGAATGTCCGCAAACAATAAAATGATCTTTACGATGCATTGTATGATTGTTTCCTTTT  >  NC_000913/1309435‑1309571

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.