| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 258675 | NA (NA) | 29 (1.040) | 26/284 | 0.1 | 100% | intergenic (+776/‑1) | crl/crl | pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers/pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers |
| ? | NC_000913 | 1309435 = | 0 (0.000) | coding (835/1254 nt) | kch | voltage‑gated potassium channel | |||||
TGCATCGTTATCACTCAGCGCCAGAATGGCCCGGCAACGATCGATTCCCGCTTTCTTTAATACAGAACTGTCATTACTGTCACCGGGGATAACATCAGCATTATCGCCTAAGCGTTGCTCAAGTTGCTTGATATCATCTTCAGGCAAGTTGCTGATAACCGTTACGTTTTGTCCGCGTTGATTCAGTTGCAGGATCGTATTGATGGCGAGAATCGAATGTCCGCAAACAATAAAATGATCTTTACGATGCATTGTATGATTGTTTCCTTTTACAAGT > NC_000913/1309301‑1309577 | gtccggcgttgcttttgtcgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCATCTTCAg < 2:116644‑M2/9‑1 (MQ=255)gtccggcggtgcttttgccgttacgcaccaccccgtcagtagatgaacaggagggacagctgatagaaacagaagcgactggagcccctcaaaaacaccataatacactaaatcagtacattggcagcatcccccatctcccg > 2:192483‑M2/135‑139 (MQ=255) tgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCATCTTCAGGCAAGTTGc > 2:370481‑M2/126‑143 (MQ=255) cgttacgcaccaccccggcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCATCTTCAGGCAAGTTGCTGATAACCg < 2:399073‑M2/27‑1 (MQ=255) accccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCATCTTCAGGCAAGTTGCTGATAACCGTTACGTTTTGt < 2:309168‑M2/38‑1 (MQ=255) accccgtcagtagcagaagaggattgacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCATCTTCAGGCAAGTTGCTGATAACCGTTACGTTTTGt < 2:76049‑M2/38‑1 (MQ=255) cccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtacgtcggcagcatcaccCACCTTCAGGTAACTTGCTGATAcccgttacgccagctac > 2:478849‑M2/104‑135 (MQ=255) gtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCATCTTCAGGCAAGTTGCTGATAACCGTTACGTTTTGTCcgcg > 1:398561‑M2/101‑143 (MQ=255) gcagtagctgaacaggagcgcccgctgacagcagcagaagccactcgagcacctcaaaaacaccatcatacactagatcagtaagttggcagcatcaccGTTCTTCAGGCAAGTTGCTGATAACCGTTACGTTTTGTCCGCGt < 2:265560‑M2/44‑1 (MQ=255) ctgaacaggagggacagctgatagaatcagaagccactggagcacctcaaaaaccccatcatacactaaatcagtaagttggcagcatcaccCATCTTCAGGCAAGTTGCTGATAACCGTTACGTTTTGTCCGCGTTGATTCa < 2:200735‑M2/51‑1 (MQ=255) tgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCATCTTCAGGCAAGTTGCTGATAACCGTTACGTTTTGTCCGCGTTGATTCAg < 1:54054‑M2/52‑1 (MQ=255) agaacaggatggaaagatgatagaaacagaagccaatggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCATCTTCAGGCAAGTTGCTGATAACCGTTACGTTTTGTCCGCGTTGATTCAg < 2:24515‑M2/52‑1 (MQ=255) cgacagctgatagaaacagaagcccctggatcacctcaaaaacaccaccatacactaaatcagtaagttggcagcatcaccCATCTTCAGGCAAGTTGCTGATAACCGTTACGTTTTGTCCGCGTTGATTCAGTTGCAGGATc < 1:302519‑M2/62‑1 (MQ=255) gagctgatggaaacagaggcgagtggagcacctcaaagacaccatcagacacgaaatcagtaagtgggcagcatcaccCATCTTCAGGCAAGTTGCTGATAACCGTTACGTTTTGTCCGCGTTGATTCAGTTGCAGGATCGTa < 1:98913‑M2/65‑1 (MQ=255) cctgatacaaacaaaagcccctgtagcacctcaaaaacacgatcatacactaaatcagtaagtgggcagcatcaccCCTCTTCAGGCAAGTTGCTGATAACCGTTACGTTTTGGCCGCGTTGATTCAGTTGCAGGATCGTAtt < 2:289594‑M2/67‑1 (MQ=255) ctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCATCTTCAGGCAAGTTGCTGATAACCGTTACGTTTTGTCCGCGTTGATTCAGTTGCAGGATCGTATTg > 1:436145‑M2/76‑143 (MQ=255) tgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCATCTTCAGGCAAGTTGCTGATAACCGTTACGTTTTGTCCGCGTTGATTCAGTTGCAGGGTCATATTGa > 1:57838‑M2/75‑143 (MQ=255) agaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCATCTTCAGGCAAGTTGCTGATAACCGTTACGTTTTGTCCGCGTTGATTCAGTTGCAGGATCGTATTGATGGc < 1:114411‑M2/73‑1 (MQ=255) aaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCATCTTCAGGCAGGTTGCTGATAACGGTTACGTTTTGTCCGCGTTGATTCAGTTGCAGGATCGTATTGATGGCga < 1:132696‑M2/75‑1 (MQ=255) acagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCATCTTCAGGCAAGTTGCTGATAACCGTTACGTTTTGTCCGCGTTGATTCAGTTGCAGGATCGTATTGATGGCgaga < 1:347535‑M2/77‑1 (MQ=255) aagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCATCTTCAGGCAAGTTGCTGATAACCGTTACGTTTTGTCCGCGTTGATTCAGTTGCAGGATCGTATTGATGGCGAGAATCg < 1:415316‑M2/81‑1 (MQ=255) actggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCATCTTCAGGCAAGTTGCTGATAACCGTTACGTTTTGTCCGCGTTGATTCAGTTGCAGGATCGTATTGATGGCGAGAATCGAATGt < 1:41320‑M2/86‑1 (MQ=255) catcatacactaaatcagtaagttggcagcatcaccCATCTTCAGGCAAGTTGCTGATAACCGTTACGTTTTGTCCGCGTTGATTCAGTTGCAGGATCGTATTGATGGCGAGAATCGAATGTCCGCAAACAATAAAATGATCt < 1:370481‑M2/107‑1 (MQ=255) catcatacactaaatcagtaagttggcagcatcaccCATCTTCAGGCAAGTTGCTGATAACCGTTACGTCTTGTCCGCGTTGATTCAGTTGCAGGATCGTATTGCTGGCGAGAATCGCATGTCCGCCAGCAATAAACTGATCt > 2:113267‑M2/37‑143 (MQ=255) taaatcagtaagttggcagcatcaccCATCTTCAGGCAAGTTGCTGATAACCGTTACGTTTTGTCCGCGTTGATTCAGTTGCAGGATCGTATTGATGGCGAGAATCGAATGTCCGCCAACAATAAAATGATCTTTACGATGCa > 1:259056‑M2/27‑143 (MQ=255) aaatcagtaagttggcagcatcaccCATCTTCAGGCAAGTTGCTGATAACCGTTACGTTTTGAACGCGTTGATTCAGTTGCAGGATGGTATTGATGGCGAGAATCGAATGTCCGCAAACAATAAAATGATCTATACGGTGCAt > 1:197444‑M2/26‑143 (MQ=255) taagttggcagcatcaccCATCTTCAGGCAAGTTGCTGATAACCGTTACGTTTTGTCCGCGTTGATTCAGTTGCAGGATCGTATTGATGGCGAGCATCGCATGGCCGCAAACAATAAAATGATCTTTAACATGCATTGTCtgg > 2:269386‑M2/19‑142 (MQ=255) taagttggcagcatcaccCATCTTCAGGCAAGTTGCTGATAACCGTTACGTTTTGTCCGCGTTGATTCAGTTGCAGGATCGTATTGATGGCGAGAATCGAATGTCCGCAAACAATAAAATGATCTTTACGATGCATTGTATGa > 1:40939‑M2/19‑143 (MQ=255) atcaccCATCTTCAGGCAAGTTGCTGATAACCGTTACGTTTTGTCCGCGTTGATTCAGTTGCAGGATCGTATTGATGGCGAGAATCGAATGTCCGCAAACAATAAAATGATCTTTACGATGCATTGTATGATTGTTTCCtttt < 1:41662‑M2/137‑1 (MQ=255) catcTTCAGGCAAGTTACTGGAGATCGTTACGTACATTTCGCGTTTATTCAGTTGCAGGATCGTATTGATGGCGAGAATCGACTGTCCGCAAACAATACAATGATCTTTACGATGCATTGTATGATTGTTCCCTTTTACAAGt > 2:105103/1‑143 (MQ=255) | TGCATCGTTATCACTCAGCGCCAGAATGGCCCGGCAACGATCGATTCCCGCTTTCTTTAATACAGAACTGTCATTACTGTCACCGGGGATAACATCAGCATTATCGCCTAAGCGTTGCTCAAGTTGCTTGATATCATCTTCAGGCAAGTTGCTGATAACCGTTACGTTTTGTCCGCGTTGATTCAGTTGCAGGATCGTATTGATGGCGAGAATCGAATGTCCGCAAACAATAAAATGATCTTTACGATGCATTGTATGATTGTTTCCTTTTACAAGT > NC_000913/1309301‑1309577 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |