New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 120780511 (0.390)15 (0.610) 14/252 0.7 53.8% coding (305/630 nt) stfP e14 prophage, uncharacterized protein
?NC_000913 = 1209602 16 (0.650)pseudogene (18/501 nt) stfE pseudogene, e14 prophage, side tail fiber protein fragment family,Phage or Prophage Related

GTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGG  >  NC_000913/1207664‑1207946
                                                                                                                                              |                                                                                                                                             
cattacgttgtagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAgg                                                                                                                                               >  1:293937‑M1/128‑143 (MQ=255)
 tGCCAGTCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAg                                                                                                                                             <  2:133484/143‑1 (MQ=255)
     aGCCGGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgc                                                                                                                                         <  2:85322‑M1/143‑7 (MQ=255)
       ccTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGGAGGctctgcat                                                                                                                                       >  2:20451‑M1/1‑135 (MQ=255)
             atctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAAt                                                                                                                                  <  1:357309‑M1/29‑1 (MQ=255)
                ggggCGGCACGGCCAGTTACTTACCGGACTTGGCGCGCTGCTGTTACGCCGCAAGAATCCGTTTGGCGATAGCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttg                                                                                                                              <  2:249347‑M1/143‑18 (MQ=255)
                ggggCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttg                                                                                                                              <  2:16322‑M1/143‑18 (MQ=255)
                 gggCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATgcagc                                                                                                                             >  1:102128/1‑143 (MQ=255)
                     ggcACGACCAGTTACTTACGGCCCTTCGGGCGCTGCTGTTGCGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtc                                                                                                                         <  2:485148‑M1/143‑23 (MQ=255)
                          gACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCACACGGCTCCCGAAAACCCTGGCTTGGGAGAAGGctctgcattacccgtcggtgtcccggt                                                                                                                    >  2:420140‑M1/1‑116 (MQ=255)
                             tttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGCAGCAAAACTCAATGCAGCAACGGCtacgt                                                                                                                  <  2:87952‑M1/45‑3 (MQ=255)
                             cAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGCTTGGGAGAAGGctctgcattacctgtcggtgtcctggttcc                                                                                                                 >  2:311720‑M1/1‑113 (MQ=255)
                                  tgatacgcgcacatagcgagtaggcatgttggagcgccctggtagaagttgggatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGa                                                                                                             >  2:98646‑M1/94‑143 (MQ=255)
                                   cttacCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATACCCTTGATCAACGTTCTATGTAGTTGACTGTGGAAACCACCCACGAAAACCTTGGTTTAAGAGAAGGGGCAAAACTCACTGCAGCAGCGGCTACACTAGGACg                                                                                                           >  1:225006/1‑143 (MQ=255)
                                      acgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgatagttatttctacatattcataaacgTTGGTTGGGGAGAAGGAGCAAAACTCAAAGCAGCAAAGGCTACATtaggaggac                                                                                                         <  2:139154‑M1/54‑5 (MQ=255)
                                      acCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATACGTTTGGCGATATCAAATCGGATGGCACGGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCGAAACTCAATGCAGCGACGGCTACGTGAGGACGCAc                                                                                                        >  2:8277/1‑143 (MQ=18)
                                       ccGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttca                                                                                                       <  1:380725‑M1/143‑41 (MQ=255)
                                        cGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcag                                                                                                      >  1:6670‑M1/1‑102 (MQ=255)
                                                            tAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctgg                                                                                  <  1:467223‑M1/143‑62 (MQ=255)
                                                                  atccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGAt                                                                             >  2:198929‑M1/62‑143 (MQ=255)
                                                                      ccctggtaagagcaggaatgatgccgtttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATtggt                                                                         >  2:250917‑M1/58‑143 (MQ=255)
                                                                         tCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGGTACATAGCTATACCGGTTATGATTGGTGGTa                                                                     >  2:242211/1‑143 (MQ=255)
                                                                              aaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGa                                                                 >  1:19488‑M1/50‑143 (MQ=255)
                                                                                    gATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTACAATTGGTAGTATTGACCAATc                                                           >  2:370552/1‑143 (MQ=255)
                                                                                    gATATCAAAGCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTACGACTGGGGGCATTCAGCGATc                                                           >  2:370892/1‑143 (MQ=38)
                                                                                                   ggCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTg                                            <  1:423982/143‑1 (MQ=255)
                                                                                                   ggCACGGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTg                                            <  1:341303/143‑1 (MQ=255)
                                                                                                    cttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTgg                                           >  1:485624‑M1/28‑143 (MQ=255)
                                                                                                     ttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACTGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGGGGTATTGAGCAATCAGTAATCATTCAGTggg                                          <  1:459881‑M1/117‑1 (MQ=255)
                                                                                                      tgttatttcttcgttttcatagacgTTGGGGTGGGAGAAGGAGCGAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTgggg                                         >  2:151650‑M1/26‑143 (MQ=255)
                                                                                                       gttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTggggg                                        <  1:316082‑M1/119‑1 (MQ=255)
                                                                                                         tatttcttcattttcctaaatgTCGGTTTGTGATAAGTAGCAGAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTg                                      >  1:87952‑M1/23‑143 (MQ=255)
                                                                                                              atcggCTCTCGAAAACCGTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactgg                                 <  2:457110‑M1/141‑111 (MQ=255)
                                                                                                                  gCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgccatgctgcccctttttctcctgcagaatacccggacccgcccca                             >  1:455869‑M1/1‑29 (MQ=255)
                                                                                                                   cgctcgaGAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaaag                            <  2:286889‑M1/141‑116 (MQ=255)
                                                                                                                    tctcGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGCGGGGATGGCACGCCGCaa                           >  2:413466/1‑143 (MQ=255)
                                                                                                                     ctcGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaaaggc                          <  1:274497‑M1/143‑118 (MQ=255)
                                                                                                                       cGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctgcgtcgaaagagagggtgccgctttttctgctgaagaatacccggaactggcaaaggctt                        >  1:110209‑M1/1‑24 (MQ=255)
                                                                                                                         caaaCCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGGGGGGGTGGAGAGCCGCagacgcc                      >  1:321655/2‑137 (MQ=255)
                                                                                                                                   TTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATGTGCCTCTg            <  1:2160‑M1/143‑1 (MQ=255)
                                                                                                                                   TTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTAATGAGCAATCAGTAATCATTCACTGGGGAAAGAATGCAGCAATAgcatctgggtctg            <  2:1988‑M1/143‑7 (MQ=255)
                                                                                                                                     tGGGCGAAGGctctgcatctcctgtttgtgtcccgcttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaacacccggaactggcaatggcttatccgacaaataaa          <  2:64710‑M1/143‑134 (MQ=255)
                                                                                                                                       ggAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgacatgcaatggtgccgctttttctgctgaagaatacccggaactggcaaaagcttatccgacaaacaaatt        >  2:384592‑M1/1‑8 (MQ=255)
                                                                                                                                       ggAGAAGGctctgcatcacctgttagtgtcccggttccgtggccttcggccacacctccaacaggatgcctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaaaggcttatccgacaaataaatt        <  2:343534‑M1/143‑136 (MQ=255)
                                                                                                                                             ggctctgcattacctgttcgtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaaaggcttatccgacaaataaattgcctga  <  1:443275‑M1/143‑142 (MQ=255)
                                                                                                                                              |                                                                                                                                             
GTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGG  >  NC_000913/1207664‑1207946

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.