| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1207805 | 11 (0.390) | 15 (0.610) | 14/252 | 0.7 | 53.8% | coding (305/630 nt) | stfP | e14 prophage, uncharacterized protein |
| ? | NC_000913 | = 1209602 | 16 (0.650) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage, side tail fiber protein fragment family,Phage or Prophage Related | |||||
GTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAAT‑CCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGG > NC_000913/1207664‑1207946 | cattacgttgtagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAgg > 1:293937‑M1/128‑143 (MQ=255) tGCCAGTCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAAT‑CCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAg < 2:133484/143‑1 (MQ=255) aGCCGGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAAT‑CCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgc < 2:85322‑M1/143‑7 (MQ=255) ccTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAAT‑CCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGGAGGctctgcat > 2:20451‑M1/1‑135 (MQ=255) atctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAAt < 1:357309‑M1/29‑1 (MQ=255) ggggCGGCACGGCCAGTTACTTACCGGACTTGGCGCGCTGCTGTTACGCCGCAAGAAT‑CCGTTTGGCGATAGCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttg < 2:249347‑M1/143‑18 (MQ=255) ggggCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAAT‑CCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttg < 2:16322‑M1/143‑18 (MQ=255) gggCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAAT‑CCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATgcagc > 1:102128/1‑143 (MQ=255) ggcACGACCAGTTACTTACGGCCCTTCGGGCGCTGCTGTTGCGCCGCAAGAAT‑CCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtc < 2:485148‑M1/143‑23 (MQ=255) gACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAAT‑CCGTTTGGCGATATCAAATCGGATGGCACTGTGCACACGGCTCCCGAAAACCCTGGCTTGGGAGAAGGctctgcattacccgtcggtgtcccggt > 2:420140‑M1/1‑116 (MQ=255) tttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGCAGCAAAACTCAATGCAGCAACGGCtacgt < 2:87952‑M1/45‑3 (MQ=255) cAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAAT‑CCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGCTTGGGAGAAGGctctgcattacctgtcggtgtcctggttcc > 2:311720‑M1/1‑113 (MQ=255) tgatacgcgcacatagcgagtaggcatgttggagcgccctggtagaagttgggatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGa > 2:98646‑M1/94‑143 (MQ=255) cttacCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATACCCTTGATCAACGTTCTAT‑GTAGTTGACTGTGGAAACCACCCACGAAAACCTTGGTTTAAGAGAAGGGGCAAAACTCACTGCAGCAGCGGCTACACTAGGACg > 1:225006/1‑143 (MQ=255) acgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgatagttatttctacatattcataaacgTTGGTTGGGGAGAAGGAGCAAAACTCAAAGCAGCAAAGGCTACATtaggaggac < 2:139154‑M1/54‑5 (MQ=255) acCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAAT‑ACGTTTGGCGATATCAAATCGGATGGCACGGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCGAAACTCAATGCAGCGACGGCTACGTGAGGACGCAc > 2:8277/1‑143 (MQ=18) ccGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAAT‑CCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttca < 1:380725‑M1/143‑41 (MQ=255) cGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAAT‑CCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcag > 1:6670‑M1/1‑102 (MQ=255) tAAGCCGCAAGAAT‑CCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctgg < 1:467223‑M1/143‑62 (MQ=255) atccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGAt > 2:198929‑M1/62‑143 (MQ=255) ccctggtaagagcaggaatgatgccgtttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATtggt > 2:250917‑M1/58‑143 (MQ=255) t‑CCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGGTACATAGCTATACCGGTTATGATTGGTGGTa > 2:242211/1‑143 (MQ=255) aaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGa > 1:19488‑M1/50‑143 (MQ=255) gATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTACAATTGGTAGTATTGACCAATc > 2:370552/1‑143 (MQ=255) gATATCAAAGCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTACGACTGGGGGCATTCAGCGATc > 2:370892/1‑143 (MQ=38) ggCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTg < 1:423982/143‑1 (MQ=255) ggCACGGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTg < 1:341303/143‑1 (MQ=255) cttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTgg > 1:485624‑M1/28‑143 (MQ=255) ttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACTGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGGGGTATTGAGCAATCAGTAATCATTCAGTggg < 1:459881‑M1/117‑1 (MQ=255) tgttatttcttcgttttcatagacgTTGGGGTGGGAGAAGGAGCGAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTgggg > 2:151650‑M1/26‑143 (MQ=255) gttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTggggg < 1:316082‑M1/119‑1 (MQ=255) tatttcttcattttcctaaatgTCGGTTTGTGATAAGTAGCAGAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTg > 1:87952‑M1/23‑143 (MQ=255) atcggCTCTCGAAAACCGTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactgg < 2:457110‑M1/141‑111 (MQ=255) gCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgccatgctgcccctttttctcctgcagaatacccggacccgcccca > 1:455869‑M1/1‑29 (MQ=255) cgctcgaGAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaaag < 2:286889‑M1/141‑116 (MQ=255) tctcGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGCGGGGATGGCACGCCGCaa > 2:413466/1‑143 (MQ=255) ctcGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaaaggc < 1:274497‑M1/143‑118 (MQ=255) cGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctgcgtcgaaagagagggtgccgctttttctgctgaagaatacccggaactggcaaaggctt > 1:110209‑M1/1‑24 (MQ=255) caaaCCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGGGGGGGTGGAGAGCCGCagacgcc > 1:321655/2‑137 (MQ=255) TTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATGTGCCTCTg < 1:2160‑M1/143‑1 (MQ=255) TTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTAATGAGCAATCAGTAATCATTCACTGGGGAAAGAATGCAGCAATAgcatctgggtctg < 2:1988‑M1/143‑7 (MQ=255) tGGGCGAAGGctctgcatctcctgtttgtgtcccgcttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaacacccggaactggcaatggcttatccgacaaataaa < 2:64710‑M1/143‑134 (MQ=255) ggAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgacatgcaatggtgccgctttttctgctgaagaatacccggaactggcaaaagcttatccgacaaacaaatt > 2:384592‑M1/1‑8 (MQ=255) ggAGAAGGctctgcatcacctgttagtgtcccggttccgtggccttcggccacacctccaacaggatgcctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaaaggcttatccgacaaataaatt < 2:343534‑M1/143‑136 (MQ=255) ggctctgcattacctgttcgtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaaaggcttatccgacaaataaattgcctga < 1:443275‑M1/143‑142 (MQ=255) | GTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAAT‑CCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGG > NC_000913/1207664‑1207946 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |