New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 120780511 (0.390)15 (0.610) 14/252 0.7 53.8% coding (305/630 nt) stfP e14 prophage, uncharacterized protein
?NC_000913 = 1209602 16 (0.650)pseudogene (18/501 nt) stfE pseudogene, e14 prophage, side tail fiber protein fragment family,Phage or Prophage Related

TCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAAC  >  NC_000913/1209462‑1209739
                                                                                                                                            |                                                                                                                                         
tCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACGAACAGGTAATGCAGAGcc                                                                                                                                         <  1:443275‑M2/143‑3 (MQ=255)
tCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGACACCATTGCATTTCAGCCAGCCTGTTGACAGAGTGGCTAAAGGCAACGGAACCGAGACACCAACAGATAATGCagagac                                                                                                                                         >  2:257101/1‑141 (MQ=255)
      aaTTTGTTTGTCGGATAAGCTTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATGTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcc                                                                                                                                   >  2:384592‑M2/1‑135 (MQ=255)
      aaTTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGGCATCCTGTTGGAGGTGTGGCCGAAGGCCACGGAACCGGGACACTAACAGGTGATGCAGAGccttctcc                                                                                                                                   <  2:343534‑M2/143‑9 (MQ=255)
        tttatttGTCGGATAAGCCATTGCCAGTTCCGGGTGTTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAAGCGGGACACAAACAGGAGATGCAGAGccttcgccca                                                                                                                                 <  2:64710‑M2/143‑11 (MQ=255)
               ggcgcaTAAGCCTTCGCGAGTGCCGGGAGTCGCTCAGCAGAAAAAGCGGCACCATTGCATTTCCGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAAc                                                                                                                          <  1:201186/138‑1 (MQ=255)
                      aaGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCCTCTCTTTCGACGCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcg                                                                                                                   >  1:110209‑M2/1‑119 (MQ=255)
                        gCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgag                                                                                                                 <  1:274497‑M2/143‑27 (MQ=255)
                          cTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttctcgagcg                                                                                                               <  2:286889‑M2/143‑29 (MQ=255)
                           tttGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAAt                                                                                                              <  2:126631/143‑1 (MQ=255)
                           tggggcgggtccgggtattCTGCAGGAGAAAAAGGGGCAGCATGGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagc                                                                                                              >  1:455869‑M2/10‑114 (MQ=255)
                              gCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCAAAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGGAATGCAGAGCCGTCTACCAAACCAGCgaggaagaagatgaa                                                                                                           >  2:128620/1‑129 (MQ=255)
                               ccAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccacggttttcgagagccgat                                                                                                          <  2:457110‑M2/143‑34 (MQ=255)
                                 aggtCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAGTGCAGAGCCTTCTCCCAAGCCCACGTCTCTGAAAATgaagac                                                                                                        >  2:264516/4‑142 (MQ=255)
                                 aGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATggagaa                                                                                                        >  2:304555/1‑143 (MQ=255)
                                       gggTATTCTTCAGCAGAAAAAACGGAAACATTGCATTAAAGCCAACCTGTAGGCAGAGTGGCTGAAGACAACGAAACCGTGACAACAACAGGTAAAGCAGAGCAGTCTACAAAATCAGCGAAGATGAAAAAGAAGAAAGAAcc                                                                                                  >  2:148221/1‑142 (MQ=255)
                                            ttcttcAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCaa                                                                                             >  2:35131/1‑143 (MQ=255)
                                               ttcAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGGAAATg                                                                                          >  2:87587/1‑143 (MQ=255)
                                                      gAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTGTATGAACATGAAGAAATAACAAGCACATGGcatcag                                                                                   >  1:261288/1‑142 (MQ=255)
                                                                    aTTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCa                                                                     <  1:371753/143‑1 (MQ=255)
                                                                         aTTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAggggg                                                                <  1:95980/143‑1 (MQ=255)
                                                                                ccagccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggctta                                                         <  1:467223‑M2/143‑83 (MQ=255)
                                                                                           gCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCAACATTCCTGCTTTTACCAGGAGAATTTAACAAGCTCATAgg                                              >  2:384337/1‑143 (MQ=255)
                                                                                                    cTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcg                                     >  1:6670‑M2/1‑41 (MQ=255)
                                                                                                     tGAAGGCCACGGAACCGGGACACCAACAGGTAATGCCGAGCCTTCTCCCAAACCAACGTTAATGAAAATGACGAAATAACAAGCACATGGCATCACTCGAGCATTTACCAGGGGACTTTCACATGATTATATGCTATGTAcgc                                    >  2:143624/1‑143 (MQ=255)
                                                                                                     tGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcgg                                    <  1:380725‑M2/143‑104 (MQ=255)
                                                                                                             aCGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCATCGTTTATGAAAATGAAGAAATTACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATcaac                            <  2:480122/143‑1 (MQ=255)
                                                                                                               ggAACCAGGACACCGACAGGTAATGCAGAGccttctcccaagccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactg                          >  2:311720‑M2/1‑30 (MQ=255)
                                                                                                                  aCCGGGACACCGACGGGTAATGCAGAGccttctcccaagccagggttttcgggagccgtgtgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtc                       >  2:420140‑M2/1‑27 (MQ=255)
                                                                                                                    cGGGACACCAACAGGTAATGCAGAGCCTTCGCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCCAATGGCATCATACCTGATTATGCCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGAc                     <  2:215363/143‑1 (MQ=255)
                                                                                                                       gACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcgcaacagcagcgcccgaagggccgtaagtaactggtcgtgcc                  <  2:485148‑M2/143‑122 (MQ=255)
                                                                                                                            cAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgctatcgccaaacggattcttgcggcgtaacagcagcgcgccaagtccggtaagtaactggccgtgccgcccc             <  2:249347‑M2/143‑127 (MQ=255)
                                                                                                                            cAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgcccc             <  2:16322‑M2/143‑127 (MQ=255)
                                                                                                                                  gTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCCACAAATGACCAGAACACAGATCt       >  1:452233/1‑143 (MQ=255)
                                                                                                                                     aTGCAGAGcctcctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctccagg    >  2:20451‑M2/1‑8 (MQ=255)
                                                                                                                                       gCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctcccggct  <  2:85322‑M2/143‑138 (MQ=255)
                                                                                                                                            |                                                                                                                                         
TCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAAC  >  NC_000913/1209462‑1209739

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.