Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 1,978,503 Δ776 bp insB1insA insB1, insA

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 1978503 1979278 776 40 [2] [0] 38 insB1–insA insB1, insA

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 19785022 (0.070)38 (1.440) 36/268 0.0 97.6% intergenic (‑305/+16) flhD/insB1 flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B
?NC_000913 1979279 = 0 (0.000)intergenic (‑64/‑474) insA/uspC IS1 repressor TnpA/universal stress protein

GGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAAT  >  NC_000913/1979141‑1979411
                                                                                                                                          |                                                                                                                                    
ctttacacttatctaagatttttcctaaatcgacgaaactgtactcgtcactacacgcacatacaacggaggggtgctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATaa                                                                                                                                  <  1:158694‑M2/5‑1 (MQ=255)
  gtacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGt                                                                                                                                <  2:108651‑M2/7‑1 (MQ=255)
            ctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttttg                                                                                                                      >  2:220912‑M2/127‑143 (MQ=255)
                 gtttttcctagatcgaggcgtctgtcctcgtctctacacgcacatacagcggaggggggctgcgattttcaataatgcgtgatgcagatcacacaatacactcaattacttaacataaatgTATAAGTCATACttttgttttg                                                                                                                 <  2:402083‑M2/22‑1 (MQ=255)
                  tttttcctaaatcgacgcaactgtactcgtcactgcacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaacacactcaattacttaacataactgTATAACTCATACTTTTGTTTTgg                                                                                                                >  2:31863‑M2/121‑143 (MQ=255)
                  tttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTgg                                                                                                                <  1:319096‑M2/23‑1 (MQ=255)
                  tttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTgg                                                                                                                <  1:323229‑M2/23‑1 (MQ=255)
                          aaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTAttt                                                                                                        >  1:267528‑M2/113‑143 (MQ=255)
                            atcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacctaaatgTATAAATCATACTTTTGTCTTGGGTGTATTTCa                                                                                                      >  2:469116‑M2/111‑143 (MQ=255)
                                  gcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGt                                                                                                <  1:440322‑M2/39‑1 (MQ=255)
                                  gcaactgtactcgtcactacacgcacataaaaaggaggggggctgcgattttcaataatgcgagatgcagatcacacaaaacactcaattacttaaaataaatgTATAAGACAGACTATTGATTTAGGTGTAGTTTAATATGt                                                                                                >  2:294187‑M2/105‑143 (MQ=255)
                                         tactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAg                                                                                         <  1:249079‑M2/46‑1 (MQ=255)
                                          actcgtcactacacgcacatacaacggaggggggctgcgattttcaataatacgtaatgcagaacacaaaaaacactcaattacttaaaataaatgTATAAGTCATAATTTTGTATGTGGTGTATTTCAATATGTAAAAAaga                                                                                        >  2:128379‑M2/97‑142 (MQ=255)
                                            tcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTAGTTTTGGGTGTATTTCAATCTGTTAAAAAGttt                                                                                      >  1:328904‑M2/95‑143 (MQ=255)
                                              gtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAAGCGGGTAATACGttttt                                                                                    >  1:86531‑M2/93‑143 (MQ=255)
                                                 actacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGATTTTcgc                                                                                 >  2:324428‑M2/90‑143 (MQ=255)
                                                      acgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTGTTTCAATCTGTTAAAAAGTTTTTcgctacgc                                                                            >  1:94382‑M2/85‑143 (MQ=255)
                                                        gcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACATTTGTTTTGGAGCGACGTCAATCAGTTAAAAAGTTTTTcgctacgcta                                                                          >  2:212789‑M2/83‑143 (MQ=255)
                                                        gcacagacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgctacgcta                                                                          <  1:73071‑M2/61‑1 (MQ=255)
                                                          acatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTagc                                                                        <  1:322975‑M2/63‑1 (MQ=255)
                                                          acatacaacggaggggggctacgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTATGTTTTGGGTGTATTTCAATCTGTTAACAACTTTttcgctacgctaca                                                                        >  2:41157‑M2/81‑141 (MQ=255)
                                                                        ggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactgaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGaaa                                                          >  1:463479‑M2/67‑143 (MQ=255)
                                                                        ggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCAGACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGaaa                                                          <  1:379163‑M2/77‑1 (MQ=255)
                                                                                       aataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGaaa                                           >  2:231327‑M2/52‑143 (MQ=255)
                                                                                             gcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAAAAGGAATAATCGACATGGgaa                                     >  2:424073‑M2/46‑142 (MQ=255)
                                                                                               gtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATAAAaatgagagtg                                   >  1:63358‑M2/44‑140 (MQ=255)
                                                                                                 gatggagagcacacaaaaatatcaatgatttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAGAAAGTTTTTCGCTACGATAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTg                                 <  2:463479‑M2/102‑1 (MQ=255)
                                                                                                  atgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTgc                                <  1:266004‑M2/103‑1 (MQ=255)
                                                                                                           acacaaaacactcaattacttaacataaatgTATAAGTCAGACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCa                       <  1:469333‑M2/112‑1 (MQ=255)
                                                                                                           acaaaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTACTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCa                       <  2:239276‑M2/112‑1 (MQ=255)
                                                                                                              caaaacacgcaattacttaacataaatgTAGAAGTCATACTGTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCaaaa                    <  1:57132‑M2/115‑1 (MQ=255)
                                                                                                                 accactcacttacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAAGCGGGTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATaa                 <  1:129575‑M2/118‑1 (MQ=255)
                                                                                                                 aacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCACAAATAAAACAGGAATAATCGAAATGAGATGTTGCGCACAGTCAACATaa                 >  2:261833‑M2/26‑143 (MQ=255)
                                                                                                                      tcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAacacac            >  2:83360‑M2/21‑143 (MQ=255)
                                                                                                                         attacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAACAGTTTTTCGCTACGCTAGCAAGAAAAAACGAAACAAAAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGt         >  2:290541‑M2/18‑143 (MQ=255)
                                                                                                                              ttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCTAGATAACTCACCGTAaata    >  1:8381‑M2/13‑143 (MQ=255)
                                                                                                                              ttaacagaaatgTAGAAGGCATACTGTTGTGGTGGGTGTAGTTCAAGCGGTTAAAGAGTTTTGCGCTACGCGAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAaata    <  2:117936‑M2/131‑1 (MQ=255)
                                                                                                                                aacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAaataat  >  2:93816‑M2/11‑143 (MQ=255)
                                                                                                                                          |                                                                                                                                    
GGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAAT  >  NC_000913/1979141‑1979411

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.