Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 1,978,503 Δ776 bp insB1insA insB1, insA

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 1978503 1979278 776 40 [2] [0] 38 insB1–insA insB1, insA

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 19785022 (0.070)38 (1.440) 36/268 0.0 97.6% intergenic (‑305/+16) flhD/insB1 flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B
?NC_000913 1979279 = 0 (0.000)intergenic (‑64/‑474) insA/uspC IS1 repressor TnpA/universal stress protein

CTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGG  >  NC_000913/1978365‑1978635
                                                                                                                                         |                                                                                                                                     
cTTTACACTTATCTAAGATTTTTCCTAAATCGACGAAACTGTACTCGTCACTACACGCACATACAACGGAGGGGTGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataa                                                                                                                                  <  1:158694‑M1/143‑6 (MQ=255)
  gtaCACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagt                                                                                                                                <  2:108651‑M1/142‑8 (MQ=255)
            cTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttg                                                                                                                      >  2:220912‑M1/1‑126 (MQ=255)
                 gtttttcCTAGATCGAGGCGTCTGTCCTCGTCTCTACACGCACATACAGCGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAATACACTCAATTACTTAACATAAATGtataagtcatacttttgttttg                                                                                                                 <  2:402083‑M1/142‑23 (MQ=255)
                  tttttCCTAAATCGACGCAACTGTACTCGTCACTGCACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAACACACTCAATTACTTAACATAACTGtataactcatacttttgttttgg                                                                                                                >  2:31863‑M1/1‑120 (MQ=255)
                  tttttCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgg                                                                                                                <  1:319096‑M1/143‑24 (MQ=255)
                  tttttCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgg                                                                                                                <  1:323229‑M1/143‑24 (MQ=255)
                          aaaTCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtattt                                                                                                        >  1:267528‑M1/1‑112 (MQ=255)
                            aTCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACCTAAATGtataaatcatacttttgtcttgggtgtatttca                                                                                                      >  2:469116‑M1/1‑110 (MQ=255)
                                  gCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgt                                                                                                <  1:440322‑M1/143‑40 (MQ=255)
                                  gCAACTGTACTCGTCACTACACGCACATAAAAAGGAGGGGGGCTGCGATTTTCAATAATGCGAGATGCAGATCACACAAAACACTCAATTACTTAAAATAAATGtataagacagactattgatttaggtgtagtttaatatgt                                                                                                >  2:294187‑M1/1‑104 (MQ=255)
                                         tACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaag                                                                                         <  1:249079‑M1/143‑47 (MQ=255)
                                          aCTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATACGTAATGCAGAACACAAAAAACACTCAATTACTTAAAATAAATGtataagtcataattttgtatgtggtgtatttcaatatgtaaaaaaga                                                                                        >  2:128379‑M1/1‑96 (MQ=255)
                                            tCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatactttagttttgggtgtatttcaatctgttaaaaagttt                                                                                      >  1:328904‑M1/1‑94 (MQ=255)
                                              gTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaagcgggtaatacgttttt                                                                                    >  1:86531‑M1/1‑92 (MQ=255)
                                                 aCTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagattttcgc                                                                                 >  2:324428‑M1/1‑89 (MQ=255)
                                                      acGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtgtttcaatctgttaaaaagtttttcgctacgc                                                                            >  1:94382‑M1/1‑84 (MQ=255)
                                                        gCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacatttgttttggagcgacgtcaatcagttaaaaagtttttcgctacgcta                                                                          >  2:212789‑M1/1‑82 (MQ=255)
                                                        gCACAGACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgcta                                                                          <  1:73071‑M1/143‑62 (MQ=255)
                                                          acaTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagc                                                                        <  1:322975‑M1/143‑64 (MQ=255)
                                                          acaTACAACGGAGGGGGGCTACGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttatgttttgggtgtatttcaatctgttaacaactttttcgctacgctaca                                                                        >  2:41157‑M1/1‑80 (MQ=255)
                                                                        ggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTGAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaa                                                          >  1:463479‑M1/1‑66 (MQ=255)
                                                                        ggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcagacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaa                                                          <  1:379163‑M1/143‑78 (MQ=255)
                                                                                       aataatGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaa                                           >  2:231327‑M1/1‑51 (MQ=255)
                                                                                             gCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaaaaggaataatcgacatgggaa                                     >  2:424073‑M1/1‑45 (MQ=255)
                                                                                               gTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataataaaaatgagagtg                                   >  1:63358‑M1/1‑43 (MQ=255)
                                                                                                 gATGGAGAGCACACAAAAATATCAATGATTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttagaaagtttttcgctacgatagcaagcaaaaatgaaacaggaataatcgaaatgggatgttg                                 <  2:463479‑M1/143‑103 (MQ=255)
                                                                                                  aTGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgc                                <  1:266004‑M1/143‑104 (MQ=255)
                                                                                                           acacaAAACACTCAATTACTTAACATAAATGtataagtcagacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtca                       <  1:469333‑M1/143‑113 (MQ=255)
                                                                                                           acaaaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtacttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtca                       <  2:239276‑M1/143‑113 (MQ=255)
                                                                                                              caAAACACGCAATTACTTAACATAAATGtagaagtcatactgttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaa                    <  1:57132‑M1/143‑116 (MQ=255)
                                                                                                                 accactcacttaCTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaagcgggtaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataa                 <  1:129575‑M1/141‑119 (MQ=255)
                                                                                                                 aaCACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcacaaataaaacaggaataatcgaaatgagatgttgcgcacagtcaacataa                 >  2:261833‑M1/1‑25 (MQ=255)
                                                                                                                      tCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataacacac            >  2:83360‑M1/1‑20 (MQ=255)
                                                                                                                         aTTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaacagtttttcgctacgctagcaagaaaaaacgaaacaaaaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgt         >  2:290541‑M1/1‑17 (MQ=255)
                                                                                                                              ttAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtctagataactcaccgtaaata    >  1:8381‑M1/1‑12 (MQ=255)
                                                                                                                              ttAACAGAAATGtagaaggcatactgttgtggtgggtgtagttcaagcggttaaagagttttgcgctacgcgagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaata    <  2:117936‑M1/143‑132 (MQ=255)
                                                                                                                               tcgtggtggcgggTACTGGCTCCAACTGATTCATAGTGTTTTATGGTCAGATAATGCCCGATGACCTTGTCAGGCAGCTCCACCGAGTTGGAGACCGGCGGCCACTCCCCTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAg   <  2:216564/133‑1 (MQ=2)
                                                                                                                               attttgtgccgggTAATGACTCCCACTTATTGATCGTGTTTTATGTTCAGATAATGCCCCATGCATTTCTCATGCAGCTAAAACGGCGGGGGGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAg   <  1:112556/133‑1 (MQ=2)
                                                                                                                                aaCATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataat  >  2:93816‑M1/1‑10 (MQ=255)
                                                                                                                                         |                                                                                                                                     
CTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGG  >  NC_000913/1978365‑1978635

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: