Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
JC	NC_000913	1,707,847	Δ10 bp	17.6%	coding (929‑938/2223 nt)	rsxC →	SoxR iron‑sulfur cluster reduction factor component, putative membrane‑associated NADH oxidoreductase of electron transport complex

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1707846	54 (0.690)	11 (0.140)	11/404	NT	17.6%	coding (928/2223 nt)	rsxC	SoxR iron‑sulfur cluster reduction factor component, putative membrane‑associated NADH oxidoreductase of electron transport complex
	?	NC_000913	1707857 =	50 (0.650)					coding (939/2223 nt)	rsxC	SoxR iron‑sulfur cluster reduction factor component, putative membrane‑associated NADH oxidoreductase of electron transport complex

TAACGATATTTCTCTGCGGGTGATTCCAACCAAATATCCTT‑CTGGCGGTGCTAAACAATTAACCTACATTCTGACCGGGAAGCAGGTTCCACATGGCGGGCGTTCATCCGATATCGGCGTATTAATGCAAAACGTCGGCACTGCTTATGCAGTGAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGTGCGTCATTTATTGAATGATGCCGGATTCTGCCCCTCTGCCGATCAAATGGTGATTATGGGTGGCCCGCTAATGGGCTTTACCTTGCCATGGCTGGATGTCCCGGTCGTAAAGATTACCAACTGTCTGTTGGCTCCCTCTG‑CCAATGAACTTGGCGAACCACAGGAAGAACAAAGCTGCATCCGGTGTAGCGCCTGTGCTGACGCCTG  >  NC_000913/1707611‑1708078                                                                                                                                                                                                                                             |                                                                                                                                                                                                                                          taagtatttttCTCTGCGGGTGTTTCCAACCAAATATCCCT‑CTGGTGGTGCTAAACAATTAACCCACATTCTGACCGGGAAGCAGGTTCCACGTGGCGGGCGTGCATCCGATATCGGCGTATTAATGCAAAACGTCGGCACTGCTTAGGCAGTGAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCt                                                                                                                                                                                                                                        <  1:422288/231‑1 (MQ=255)           tctcTGCGGGTGATTCCAACCAAATATCCTT‑CTGGCGGTGCTAAACAATTAACCTACATTCTGACCGGGAAGCAGGTTCCACATGGCGGGCGTTCATCCGATATCGGCGTATTAATGCAAAACGTCGGCACTGCTTATGCAGTGAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCt                                                                                                                                                                                                                              <  2:275763/239‑1 (MQ=255)                 cGGGTGATTCCAACCAAATATCCTT‑CTGGCGGTGCTCAACAATTAACCTACATTCCGACCGGGAAGCAGGTTCCACATGGCGGACGTTCATCCGGTATTCGCGTCTTAATGCAAAACCCCGGCACTCCTTCTGCCGTGAAAACTGCCGGTATTGATGGCGGCCAGATTACCGAGCCGGGTGTACCCCTCGCATGCCGAGCACTCCCCCGCCCGGGCGACggtcaggacacgccggggc                                                                                                                                                                                                                         >  1:921360/1‑220 (MQ=255)                       aTTCCACACAAATTTCCTTGCGGGCGGT‑CTAAACAATTAACCCTCCTGCTTACCGGGGAGGCGGTCCCAGATGGGTGGAAGTGATCCGATATCGGCGTATTAATGCAAAACGTCGGCACTGGTTATGCAGTGAAACGTGGCGTTATTGATGGCGAGCCAATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGt                                                                                                                                                                                                                  <  1:801802/239‑1 (MQ=255)                       aTTCCAACCAAATATCCTT‑CTGGCGGTGCTAAACAATTAACCTACATTCTGACCGGGAAGCAGGTTCCACATGGCGGGCGTTCATCCGATATCGGCGTATTAATGCAAAACGTCGGCACTGCTTATGCAGTGAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGAAATCGCTCGCCCGGGGAACGTCTGGGCACGGCTTGGGAAGCCaag                                                                                                                                                                                                                  >  2:586012/1‑237 (MQ=255)                           ccaccaaATTTCCTT‑CTGGCGGTGCTAAACAATTAACCTCAATTCTGACCGGGAAGCAGGTGCCGCGTGGCGGGCGTTCATCCGATATCGGCGTATTAATGCAAAACGGCGGCATTGCTTATGCAGTGAAACGGGCCGTTATTGATGGCGGGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGTGCGt                                                                                                                                                                                                              <  1:744323/237‑1 (MQ=255)                            caccaaTTTTCCTT‑CGGGCGGTGTTAAAACATTACCCTCCATTCTGGCCGGGAAGCAGGTTCCCCCGGGCCGGCTTTCAACCGATTGCGGCGTATTAATGGAAACCGGCGGCAATGCTTATGCAGTGAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGTGCGTc                                                                                                                                                                                                             <  1:586012/238‑1 (MQ=255)                            aaccaaATATCCTT‑CTGGCGGTTCTAAACAATTAACCTACATTCTGACCGGGAAGCAGGTTCCACATGGCGGGCGTTCATCCGATATCGGCGTATTAATGCAAAACGTCGGCACTGCTTATGCAGTGAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGTGCGTc                                                                                                                                                                                                             <  2:53589/239‑1 (MQ=255)                                  atatCCTT‑CTGGCGGTGCTAAACAATTAACCTACATTCTGACCGGGAAGCAGGTTCCACATGGCGGGCGTTCATCCGATATCGGCGTATTAATGCAAAACGTCGGCACTGCTTATGCAGTGAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGCCGCCAGTGCGTCATTTAt                                                                                                                                                                                                       >  2:246045/1‑239 (MQ=255)                                       cctttcggCGGTGTCAAACAATTAACCTTCATTCTGACCGGGAAGCAGGTTCCCCATGGCGGGCGTTCATCCGATATCGGCGTATTAATGCAAAACGTCGGCACTGCTTATGCAGTGAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTTACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGTGCGTCATTTATTGaa                                                                                                                                                                                                   <  1:246045/233‑1 (MQ=255)                                         t‑CTGGCGGTGCTAAACAATTAACCTACATTCTGACCGGGAAGCAGGGTCCACATGGCGGGCGTTCATCCGATATCGGCGTATTAATGCAAAACGTCGGCACTGCTTATGCAGTGAATCGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGgctggggacgccagtgcgtcatttattgaatgatgccggattc                                                                                                                                                                                                <  2:228737‑M1/239‑44 (MQ=255)                                           cTGGCGGTGCTAAACAATTAACCTACATTCTGACCGGGAAGCAGGTTCCACATGGCGGGCGTTCATCCGATATCGGCGTATTAATGCAAAACGTCGGCACTGCTTATGCAGTGAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTCACTGGCGAAGCAATCCCCCGCCCGGGCAACGTCTGGGCCCGCCTGGGGACGCCAGTGCGTGATTTCTTTAatga                                                                                                                                                                                                >  2:960452/1‑238 (MQ=255)                                              gCGGTGCTAAACAATTAACCTACATTCTGACCGGGAAGCAGGTTCCACATGGCGGGCGTTCATCCGATATCGGCGTATTAATGACAAACGTCGGCACTGCTTATGCAGTGAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGTGTTGTACCCCTGACTTGCGAAGCAATCACCAGCACGGGCACCGCCTGGGCACGGCCGGGGACGCCCGAGGGTCCTTTTTTgtaaagggcc                                                                                                                                                                                            >  1:390554/1‑230 (MQ=255)                                                  tGCAAAACAATTAACCTAAATTCGGACCGGGAAGCCGGTTCCACATGGCGGGCCTTCATCCGATATCGGCGTATTAATGCAAAACGTCGGCACTGCTTATGCAGTGAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGTGCGTCATTTATTGAATGATGCCGGa                                                                                                                                                                                         <  2:682028/238‑1 (MQ=255)                                                    cTAAACAATTAACCTACATTCTGACCGGGAAGCAGGTTCCACATGGCGGGCGTTCATCCGATATCGGCGGATTAATGCAAAACGTCGGCACTGCTTATGCAGTGAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCCCGCCCCGGGAACGgcttggggcgccagggcgtcatttattgaataatgccggcttcttcccccct                                                                                                                                                                                       >  2:599025‑M1/1‑186 (MQ=255)                                                     tAAAAAATTTACCCTCCTTATGGCCGGGAAGCAGGTTCCAAGTGGGGGGGGTTCATCGGGGCGCGGAGTATTAATGCAAAACGTCGGCACTGCTTAGGCAGTGAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTGGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGTGCGTCATTTATTGAATGATGCCGGATTc                                                                                                                                                                                      <  1:86504/238‑1 (MQ=255)                                                            ttAACCTACATTCTGACCGGGAAGCAGGTTCCACATGGCGGGCGTTCATCCGATATCGGCGTATTAATGCAAAACGTCGGCACTGCTTATGCAGTGAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCGCGCCCGGGCAACGTCTGGGCACGGCCGGGGGCGCCAGTGCGTGCTTCCTTGAATGGTTCCGGGTTATGTCCct                                                                                                                                                                               >  2:187779/1‑238 (MQ=255)                                                                 cTACATTCTGACCGGGAAGCAGGTTCCACATGGCGGGCGTTCATCCGATATCGGCGTATTAATGCAAAACGTCGGCACTGCTTATGCAGTGAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCt                                                                                                                                                                                                                              <  2:754978/186‑1 (MQ=255)                                                                    cATTCTGACCGGGAAGCAGGTTCCACATGGCGGGCGTTCATCCGATATCGGCGTATTAATGCAAAACGTCGGCACTGCTTATGCAGTGAAACGTGCCGTTATTTATGGCGAGCCGATTACCGATCGTGTTGTAACCCTTCCTGGCGAAGCAATCGCTCTCCCGGGCAACGCCTGGGCACGGCTGGGGCCCCCAGTCGGTCCTTTTTTGATTGATACTCGATTCTGCCCCTCTGcccacc                                                                                                                                                                      >  1:153646/1‑235 (MQ=255)                                                                         tGACCGGGAAGCCGGTTCCACATGGCGGGGCTTCTCCCGTTATCGGCGTATTAATTCAAAACGTCGGCACTGCTTATGCAGTGAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGGGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGTGCGTCATTTATTGAATGATGCCGGATTCTGCCCCTCTGCCGATCAAATg                                                                                                                                                                 <  1:521863/239‑1 (MQ=255)                                                                         tGACCGGGAAGCAGGTTCCACATGGCGGGCGTTCATCCGATATCGGCGTATTAATGCAAAACGTCGGCACTGCTTATGCAGTGAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGTGCGTCATTTATTGAATGATGCCGGATTCTGCCCCTCTGCCGATCAAATg                                                                                                                                                                 <  2:740143/239‑1 (MQ=255)                                                                                        ttCCACATGGCGGGCGTTCATCCGATATCGGCGTATTAATGCAAAACGTCGGCACTGCTTATGCAGTGAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGa                                                                                                                                                                                                                         <  2:219231/168‑1 (MQ=255)                                                                                         tcccatgggcgggtgTTCATCCGATTTCGGCTTATTAATGCAAAACGTCGGCACGGTTTAGGCAGTGAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGTGCGTCATTTATTGAATGATGCCGGATTCTGCCCCTCTGCCGATCAAATGGTGATTATGGGTGGcc                                                                                                                                                 <  1:835722/232‑1 (MQ=255)                                                                                         tCCCCATGGGGGGGGTTCACCCGATATCGGCGTATTAATGCAAAACGTCGGCACTGCTTATGCAGTGAAACGGTCCGTTATGGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGTGCGTCATTTATTGAATGATGCCGGATTCTGCCCCTCTGCCGATCAAATGGTGATTATGGGTGGcc                                                                                                                                                 <  1:237402/239‑1 (MQ=255)                                                                                          ccACATGGCGGGCGTTCATCCGATATCGGCGTATTAATGCAAAACGTCGGCACTGCTTATGCAGTGAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGTGCGTCATTTATTTAATGATGCCGGATTCTTCCCCTCTGCCGTTCAAATGGTGATTATGGGTGGcc                                                                                                                                                 >  2:638964/1‑238 (MQ=255)                                                                                          cagcctGGCGGGCTTTCATCCGATAACGGCGTATTAATTCAAAACGGCGGCACTGCTTAAGCAGTGAAACGGGCCGTTAGTGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGTGCGTCATTTATTGAATGATGCCGGATTCTGCCCCTCTGCCGATCAAATGGTGATTATGGGTGGcc                                                                                                                                                 <  2:561843/233‑1 (MQ=255)                                                                                               tgggggggttttctCCGTTATCGGCGTTTTAAGTCAAAAGGGCGGCGTTGCTGATGCAGTGAAACGTGCCGTTATTGATGGGGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGTGCGTCATTTATTGAATGATGCCGGATTCTGCCCCTCTGCCGATCAAATGGTGATTATGGGTGGCCCGCTaa                                                                                                                                           <  1:38701/226‑1 (MQ=255)                                                                                                 gcgggcgTTCAACCGATATCGGCGTATTAAGGCAAACCGTCGGCACTGCTTATGCAGTGAACCGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGTGCGTCATTTATTGAATGATGCCGGATTCTGCCCCTCTGCCGATCAAATGGTGATTATGGGTGGCCCGCTaa                                                                                                                                           <  2:921360/237‑1 (MQ=255)                                                                                                    ggcgTTCATCCGATATCGGCGTATTAATGCAAAACGTCGGCACTGCTTATGCAGTGAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGgctgggggcgccagtgcggcatttattgaatgatgccggattctgcccccctgccgatcaaatggggattatggggggccccccaatgggctttaccttg                                                                                                                                       >  1:208495‑M1/1‑138 (MQ=255)                                                                                                        ttCATCCGATATCGGCGTATTAATGCAACACGTCGGCACTGCTTATGCCGTGAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGACGCAATCGCCCGCCCGGGCAACGTCTGGGCACGCCCTGGGAAGCCCGTGCGCTCCTTATTGCATGAGTCGGGCTTGTGCCCCCCCCCCGCTGAAATGGTGGTTATggtgggcaccccaacgggcccg                                                                                                                                   >  1:561843/1‑218 (MQ=255)                                                                                                                 tatCGGCGTATTAATGCAAAACGTCGGCACTGCTTATGCAGTGAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGTGCGTCATTTATTGAATGATGCCGGATTCTGCCCCTCTGCCGATCAAATGGTGAt                                                                                                                                                            <  2:251184/204‑1 (MQ=255)                                                                                                                                    aaCGTCGGCACTGCTTATGCAGTGAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGTGGAGCCCAGTGCGTCCTTTATTGAATGATGCCGGATTCTGCCCCCCTGCCCATCAATTGGGGATTATGGGTGGCCCGCAAAGTGGCTTTTCCTGGCCATGCCGTGTAGTCCCGGtgga                                                                                                      >  1:659145/1‑236 (MQ=255)                                                                                                                                    aaCGTCGGCACTGCTTATGCAGTGAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGTGCGTCATTTATTGAATGATGCCGGATTCTGCCCCTCTGCCGATCAAATGGTGATTATGGGTGGCCCGCTAATGGGCTTTACCTTGCCATGCCTGGATGTCCCGGTCGt                                                                                                      >  2:945289/1‑239 (MQ=255)                                                                                                                                      cgtgcgCACTGCTTATGCAGTGAAACGTGCCTGTAGTGAGGGCGAGCCGATTACCGAGCGTGTTGGAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGTGCGTCATTTATTGAATGATGCCGGATTCTGCCCCTCTGCCGATCAAATGGTGATTATGGGTGGCCCGCTAATGGGCTTTACCTTGCCATGGCTGGATGTCCCGGTCGTaa                                                                                                    <  2:451021/234‑1 (MQ=255)                                                                                                                                         cGGCACTGCTTATGCAGTGAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGTGCGTCATTTATTGAATGATGCCGGATTCTGCCCCTCTGCCGATCAATTGGTGATTATGGGTGGCCCGCTAATGGGCTTTACCTTGCCATGGCTGGATGTCCCGGCCGTAAGGa                                                                                                 >  2:732833/1‑239 (MQ=255)                                                                                                                                                 cTTATGCAGTGAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCG‑GTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGgctggggacgccagtgcgtcatttattgaatgatgccggattctgcccccctgccggtcaaatggtgattatgggtggcccgctaatgggctttaccttgccatggctggatgtcccgggcgtaaagattcccaaccgtcttttgg                                                                                         >  1:694112‑M1/1‑92 (MQ=255)                                                                                                                                                       cAGTGAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGTGCGTCATTTATTGAATGATGCCGGATTCTGCCCCTCTGCCGATCAAATg                                                                                                                                                                 <  2:457883/161‑1 (MQ=255)                                                                                                                                                           gAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTggg                                                                                                                                                                                                                                     >  2:324882/1‑89 (MQ=255)                                                                                                                                                           gAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTggg                                                                                                                                                                                                                                     <  1:324882/89‑1 (MQ=255)                                                                                                                                                           gAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGTGCGTCATTTATTGAATGATGCCGGATTCTGCCCCTCTGCCGATCAAATGGTGATTATGGGTGGCCCGCTAATGGGCTTTACCTTGCCATGGCTGGATGTCCCGGTCGTAAAGATTACCAAct                                                                                        <  2:962616/230‑1 (MQ=255)                                                                                                                                                           gAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGTGCGTCATTTATTGAATGATGCCGGATTCTGCCCCTCTGCCGATCAAATGGTGATTATGGGTGGCCCGCTAATGGGCTTTACCTTGCCATGGCTGGATGTCCCGGTCGTAAAGATTACCAAct                                                                                        >  1:962616/1‑230 (MQ=255)                                                                                                                                                           gAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGGCCGTCATTTATTGAATGATGCCGGGATCGGCCCCTCTGCCGACCAAATGGTGATTATGGGTGGCCCGCTAATGGGCCTTAACTTGCCAAGGCTGGATTGCCCGGCGGTAAAAATTACAAAcatgtcaatg                                                                                >  1:78463/1‑229 (MQ=255)                                                                                                                                                                       tATTGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGTGCGTCATTTATTGAATGATGCCGGATTCTGCCCCTCTGCCGATCAAATGGTGATTATGGGTGGCCCGCTAATGGGCTTTACCTTGCCATGGCTGGATGTCCCGGTCGTAAAGATTACCAACTGTCTGTTGGCTCCCTCTG‑cc                                                                   <  2:390554/238‑1 (MQ=255)                                                                                                                                                                         tggggggCGGGCCGGTTCCCGGGGGTGTGGACACCCTGACGGGCGAAGTAATCGCTCGCCCGGGCAAGGGCTGGGCACGGCTGGGGACGCCAGTGCGTCATTTATTGAATGATGCCGGATTCTGCCCCTCTGCCGATCAAATGGTGATTATGGGTGGCCCGCTAATGGGCTTTACCTTGCCATGGCTGGATGTCCCGGTCGTAAAGATTACCAACTGTCTGTTGGCTCCCTCTG‑CCAAt                                                                <  1:638964/234‑1 (MQ=255)                                                                                                                                                                              ggCGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGgctggggacgccagtgcgtcatttattgaatgatgccggattctgcccctctgccgatcaaatggggattatgggtggcccgctaatgggctttaccttgccatggctggatgtcccgggcggaaagattaccaactgtctggtggctccctgtgccaatgaaactggcgaaac                                                             >  1:82708‑M1/1‑64 (MQ=255)                                                                                                                                                                              ggCGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGTGCGTCATTTATTGAATGATGCCGGATTCTGCCCCTCTGCCGATCAAATGGTGATTATGGGTGGCCCGCTAATGGGCTTTACCTTGCCATGGCTGGATGTCCCGGTCGTAAAGATTACCAACTGTCTGTTGGGCCCCTCTG‑CCAATGAACt                                                           >  2:657211/1‑239 (MQ=255)                                                                                                                                                                                cGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGTGCGTCATTTATTGAATGATGCCGGATTCTGCCCCTCTGCCGATCAAATGGTGATTATGGGTGGCCCGCTAATGGGCTTTCCCTTGCCATGGCGGGATGTCCCGGTCGTAAAAATTACCACTTATCTGTGGGCTCCCTCAC‑CCAAAGAAATTg                                                         >  1:584516/1‑239 (MQ=255)                                                                                                                                                                                   gCCCATTTCCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGgctggggacgccagtgcgtcatttattgaatgatgccggattctgcccctctgccgatcaaatggtgattatgggtggcccgctaatgggctttaccttgccatggctggatgtcccggtcgtaaagattaccaactgtctgttggctccctctgccaatgaacttggcgaaccacagg                                                        <  2:742879‑M1/238‑180 (MQ=255)                                                                                                                                                                                    gcctttACCGGGCGTTTTGTAGCCCTGTCGGGGGAAGCAATCGGTCGCCCGGGCAACGTCTGGCGAGGGCTGGGGACGCCAGTGCGTCATTTATTGAATGAGGCCGGATTCTGCCCCTCTGCCGATCAAATGGTGATTATGGGGGGCCCGCTAATGGGCTTTACCTTGCCATGGCTGGATGTCCCGGTCGTAAAGATTACCAACTGTCTGTTGGCTCCCTCTG‑CCAATGAACTTGGCg                                                      <  1:850857/234‑1 (MQ=255)                                                                                                                                                                                    ccggttccgggggggttggtAACCCTGACTGGGGAAGCAATCGGTGGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGTGAGTCATGTATTGAATGATGCCGGATTCGGCCCCTCTGCCGAGCAAATGGTGATTATGGGTGGCCCGCTAATGGGCTTTACCTTGCCATGGCTGGATGTCCCGGTCGTAAAGATTACCAACTGTCTGTTGGCTCCCTCTG‑CCAATGAACTTGGCg                                                      <  1:960452/220‑1 (MQ=255)                                                                                                                                                                                    ccGATTACCGAGCG‑GTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGgctggggacgccagtgcgtcatttattgaatgatgccggattctgcccctctgccgatcaaatggtgattatgggtggcccgctaatgggctttaccttgccatggctggatgtcccggtcgtaaagattaccaactgtctgttggctccctctgccaatgaacttggcgaaccacaggaa                                                      <  2:694112‑M1/238‑182 (MQ=255)                                                                                                                                                                                        tttccGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGTGCGTCATTTATTGAATGATGACGGATTCTGCCCCTCTGCCGATCAAATGGTGATTATGGGTGGCCCGCTAATGGGCTTTACCTTGCCATGGCTGGATGTCCCGGTCGTAAAGATTACCAACTGTCTGTTGGCTCCCTCTG‑CCAATGAACTTGGCGAAcc                                                  <  2:769015/235‑1 (MQ=255)                                                                                                                                                                                            cgggCGTTTTGTACCCCTGACTGGGGAAGCAATGGCTCCCCCGGGCAACGTCTGGGCAGGGCTGGGGACGCCTGTGCGTCATTTATTGAATGATGCCGGATTCTGCCCCTCTGCCGATCAAATGGTGATTATGGGTGGCCCGCTAATGGGCTTTACCTTGCCATGGCTGGATGTCCCGGTCGTAAAGATTACCAACTGTCTGTTGGCTCCCTCTG‑CCAATGAACTTGGCGAACCACAgg                                             <  1:732833/236‑1 (MQ=255)                                                                                                                                                                                              aGCGTGTTGTAACCCTGACTGTCGAAGCAATCGCTCGCCCGGGCAACGgctggggacgccagtgcgtcattttttgcatgatgccggattctgcccctctgccgatcaaatggtgattatgggtggcccgctaatggg                                                                                                                                                 >  2:83374‑M1/1‑48 (MQ=255)                                                                                                                                                                                              aGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGTGCGTCATTTATTGAATGATGCCGGATTCTGCCCCTCTGCCGATCAAATGGTGATTATGGGTGGCCCGCTAATGGGCTTTACCTTGCCATGGCTGGATGTCCCGGTCGTAATGATTACCAACTGTCTGTTGGCTCCCTCTG‑CCAATGATCTTGGGGAACCACAGga                                            >  2:850857/1‑238 (MQ=255)                                                                                                                                                                                                    ttgtAACCCTGACTGGGGAAGCAATCGCTCGCCCGGGCAACGgctggggacgccagtgcgtcatttattgaatgatgccggattctgcccctctgccgatcaaatggtgattatgggtggcccgctaatgggctttaccttgccatggctggatgtcccggtcgtaaagattaccaactgtctgttggctccctctgccaatgaacttggcgaaccacaggaagaacaaagctgcatcc                                      <  2:208495‑M1/239‑198 (MQ=255)                                                                                                                                                                                                         aCCCTGGCGGGCGAAGCAAACGCTCGGCCGGGCCACGgctggggtcgccagggcgtcatttattgaatggtgccggattctgcccctctgccgatcaaatggtgattatgggtggcccgctaatgggctttaccttgccatggctggatgtcccggtcgtaaagattaccaactgtctgttggctccctctgccaatgaacttggcgaaccacaggaagaacaaagctgcatccggtgt                                 <  2:465089‑M1/239‑203 (MQ=255)                                                                                                                                                                                                             tgccTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCCCGGGTGGGGACGCCAGTGTGTCATTTATTGAATGATGCCGGATTCTGCCCCTCTGCCGATCAAATGGTGATTATGGGTGGCCCGCTAATGGGCTTTACCTTGCCATGGCTGGATGTCCCGGTCGTAAAGATTACCAACTGTCTGTTGGCTCCCTCTG‑CCAATGAACTTGGCGAACCACAGGAAGAACAAAGCTGCATc                            <  2:210917/236‑1 (MQ=255)                                                                                                                                                                                                              gtcggccgagggcagccgttgcacGGGCACCGTCCGGGCAGGGCTCGGGTCGCAAGTGCGTCATTGATGGAATGAGTCCGGTTTCTGCCCCTCTGCCGTGCAAATGGTGATTAGGGGTGGCTCGCTACTGGGCTTTCCCTTGCCATGGCTGGATGTCCCGGTCGTAAAGATTACCAACTGTCTGTTGGCTCCCTCTG‑CCAATGAACTTGGCGAACCACAGGAAGAACAAAGCTGCATcc                           <  1:187779/216‑1 (MQ=255)                                                                                                                                                                                                              gACTGGCGAAGCCAGCCGTCGCCCGGGGAACGgctggggacgccagtgcgtcatttattgaatgatgccggattctgcccctctgccgatcaaatggtgattatgggtggcccgctaatgggctttaccttgccatggctggatgtcccggtcgtaaagattaccaactgtctgttggctccctctgccaatgaacttggcgaaccacaggaagaacaaagctgcatccggtgtagcgc                            <  2:82708‑M1/239‑208 (MQ=255)                                                                                                                                                                                                               aCTGGCGAAGGAATCACTCCCCCGGGTGAAGTCCGGGCACGGCCTGGGCGGACCGTGCGTCAATTATTGTATGATGCCGGTTTCTGCCCCTCTCCCGATCTATTGGTGATTATGGGTGGCCCGCTAATGGGATTTCCCTTTCCATGTCTGGAAGGACCGGCCAGACAGATTCCCCACTGCCTGTCGGCTCCC‑CTGCCCACTCAACTTGCCAGACCTCAGGAAAAACAAGACTGCCTCCg                          >  1:889472/1‑239 (MQ=255)                                                                                                                                                                                                               aCTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGTGCGTc                                                                                                                                                                                                             >  2:560497/1‑61 (MQ=255)                                                                                                                                                                                                               aCTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGTGCGTc                                                                                                                                                                                                             <  1:560497/61‑1 (MQ=255)                                                                                                                                                                                                               aCTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGTGCGTCATTTATTGAATGATGCCGGATTCTGCCCCTCTGCCGATCAAATGGTGATTATGGGTGGCCCGCTAATGGGCTTTACCTTGCCATGGCTGGATGTCCCGGTCGTAAAGATTACCAACTGTCTGTTGGCTCCCTCTG‑CCAATGAACTTGGCGAACCACAGGAAGAACAAAGCTGCATCCg                          >  2:272797/1‑239 (MQ=255)                                                                                                                                                                                                               aCTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGTGCGTCATTTATTGAATGATGCCGGATTCTGCCCCTCTGCCGATCAAATGGTGATTATGGGTGGCCCGCTAATGGGCTTTACCTTGCCATGGCTGGATGGCCCGGGCGTAAAGATTACCAACTGTCTGTTGGCTCCCCCTG‑CCACGGACCTTGGCGAACCCAAGGAAGAAAAAAACTCCATCCg                          >  1:332258/1‑239 (MQ=255)                                                                                                                                                                                                                          aaTGGCTCGCCCGGGCAACGTCTGGGCACGGTTGGGGACGCCAGTGCGTCATTTATTGAATGATGCCGGATTCTGCCCCTCTGCCGATCAAATGGTGATTATGGGTGGCCCGCTAATGGGCTTTACCTTGCCATGGCTGGATGTCCCGGTCGTAAAGATTACCAACTGTCTGTTGGCTCCCTCTG‑CCAATGAACTTGGCGAACCACAGGAAGAACAAAGCTGCATCCGGTGTAgcgc                 <  2:584516/237‑1 (MQ=255)                                                                                                                                                                                                                                        gCAACGTCTGGGCACGGCTGGGGACGCCAGTGCGTCATTTATTGAATGATGCCGGATTCTGCCCCTCTGCCGATCAAATGGTGATTATGGGTGGCCCGCTAATGGGCTTTACCTTGCCATGGCTGGATGTCCCGGTCGTAAAGATTACCAACTGCTTGTTGGCTCCCCCTG‑CCAATGAACTTGGCGAACCCCAGGAGAAAAAAAGCGGCATCGGGGGAAACGcccggggcgaggccgg  >  1:832353/1‑224 (MQ=255)                                                                                                                                                                                                                                             |                                                                                                                                                                                                                                          TAACGATATTTCTCTGCGGGTGATTCCAACCAAATATCCTT‑CTGGCGGTGCTAAACAATTAACCTACATTCTGACCGGGAAGCAGGTTCCACATGGCGGGCGTTCATCCGATATCGGCGTATTAATGCAAAACGTCGGCACTGCTTATGCAGTGAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGTGCGTCATTTATTGAATGATGCCGGATTCTGCCCCTCTGCCGATCAAATGGTGATTATGGGTGGCCCGCTAATGGGCTTTACCTTGCCATGGCTGGATGTCCCGGTCGTAAAGATTACCAACTGTCTGTTGGCTCCCTCTG‑CCAATGAACTTGGCGAACCACAGGAAGAACAAAGCTGCATCCGGTGTAGCGCCTGTGCTGACGCCTG  >  NC_000913/1707611‑1708078

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.