Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
JC	NC_000913	1,707,847	Δ10 bp	17.6%	coding (929‑938/2223 nt)	rsxC →	SoxR iron‑sulfur cluster reduction factor component, putative membrane‑associated NADH oxidoreductase of electron transport complex

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1707846	54 (0.690)	11 (0.140)	11/404	NT	17.6%	coding (928/2223 nt)	rsxC	SoxR iron‑sulfur cluster reduction factor component, putative membrane‑associated NADH oxidoreductase of electron transport complex
	?	NC_000913	1707857 =	50 (0.650)					coding (939/2223 nt)	rsxC	SoxR iron‑sulfur cluster reduction factor component, putative membrane‑associated NADH oxidoreductase of electron transport complex

TCTCTGCGGGTGATTCCAACCAAATATCCTT‑CTGGCGGTGCTAAACAATTAACCTACATTCTGACCGGGAAGCAGGTTCCACATGGCGGGCGTTCATCCGATATCGGCGTATTAATGCAAAACGTCGGCACTGCTTATGCAGTGAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGTGCGTCATTTATTGAATGATGCCGGATTCTGCCCCTCTGCCGATCAAATGGTGATTATGGGTGGCCCGCTAATGGGCTTTACCTTGCCATGGCTGGATGTCCCGGTCGTAAAGATTACCAACTGTCTGTTGGCTCCCTCTG‑CCAATGAACTTGGCGAACCACAGGAAGAACAAAGCTGCATCCGGTGTAGCGCCTGTGCTGACGCCTGCCCTGCGGATCTTTTGC  >  NC_000913/1707621‑1708095                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                                tctcTGCGGGTGATTCCAACCAAATATCCTT‑CTGGCGGTGCTAAACAATTAACCTACATTCTGACCGGGAAGCAGGTTCCACATGGCGGGCGTTCATCCGATATCGGCGTATTAATGCAAAACGTCGGCACTGCTTATGCAGTGAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCt                                                                                                                                                                                                                                               <  2:275763/239‑1 (MQ=255)             aTTCCACACAAATTTCCTTGCGGGCGGT‑CTAAACAATTAACCCTCCTGCTTACCGGGGAGGCGGTCCCAGATGGGTGGAAGTGATCCGATATCGGCGTATTAATGCAAAACGTCGGCACTGGTTATGCAGTGAAACGTGGCGTTATTGATGGCGAGCCAATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGt                                                                                                                                                                                                                                   <  1:801802/239‑1 (MQ=255)             aTTCCAACCAAATATCCTT‑CTGGCGGTGCTAAACAATTAACCTACATTCTGACCGGGAAGCAGGTTCCACATGGCGGGCGTTCATCCGATATCGGCGTATTAATGCAAAACGTCGGCACTGCTTATGCAGTGAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGAAATCGCTCGCCCGGGGAACGTCTGGGCACGGCTTGGGAAGCCaag                                                                                                                                                                                                                                   >  2:586012/1‑237 (MQ=255)                 ccaccaaATTTCCTT‑CTGGCGGTGCTAAACAATTAACCTCAATTCTGACCGGGAAGCAGGTGCCGCGTGGCGGGCGTTCATCCGATATCGGCGTATTAATGCAAAACGGCGGCATTGCTTATGCAGTGAAACGGGCCGTTATTGATGGCGGGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGTGCGt                                                                                                                                                                                                                               <  1:744323/237‑1 (MQ=255)                  caccaaTTTTCCTT‑CGGGCGGTGTTAAAACATTACCCTCCATTCTGGCCGGGAAGCAGGTTCCCCCGGGCCGGCTTTCAACCGATTGCGGCGTATTAATGGAAACCGGCGGCAATGCTTATGCAGTGAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGTGCGTc                                                                                                                                                                                                                              <  1:586012/238‑1 (MQ=255)                  aaccaaATATCCTT‑CTGGCGGTTCTAAACAATTAACCTACATTCTGACCGGGAAGCAGGTTCCACATGGCGGGCGTTCATCCGATATCGGCGTATTAATGCAAAACGTCGGCACTGCTTATGCAGTGAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGTGCGTc                                                                                                                                                                                                                              <  2:53589/239‑1 (MQ=255)                        atatCCTT‑CTGGCGGTGCTAAACAATTAACCTACATTCTGACCGGGAAGCAGGTTCCACATGGCGGGCGTTCATCCGATATCGGCGTATTAATGCAAAACGTCGGCACTGCTTATGCAGTGAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGCCGCCAGTGCGTCATTTAt                                                                                                                                                                                                                        >  2:246045/1‑239 (MQ=255)                             cctttcggCGGTGTCAAACAATTAACCTTCATTCTGACCGGGAAGCAGGTTCCCCATGGCGGGCGTTCATCCGATATCGGCGTATTAATGCAAAACGTCGGCACTGCTTATGCAGTGAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTTACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGTGCGTCATTTATTGaa                                                                                                                                                                                                                    <  1:246045/233‑1 (MQ=255)                                 cTGGCGGTGCTAAACAATTAACCTACATTCTGACCGGGAAGCAGGTTCCACATGGCGGGCGTTCATCCGATATCGGCGTATTAATGCAAAACGTCGGCACTGCTTATGCAGTGAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTCACTGGCGAAGCAATCCCCCGCCCGGGCAACGTCTGGGCCCGCCTGGGGACGCCAGTGCGTGATTTCTTTAatga                                                                                                                                                                                                                 >  2:960452/1‑238 (MQ=255)                                    gCGGTGCTAAACAATTAACCTACATTCTGACCGGGAAGCAGGTTCCACATGGCGGGCGTTCATCCGATATCGGCGTATTAATGACAAACGTCGGCACTGCTTATGCAGTGAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGTGTTGTACCCCTGACTTGCGAAGCAATCACCAGCACGGGCACCGCCTGGGCACGGCCGGGGACGCCCGAGGGTCCTTTTTTgtaaagggcc                                                                                                                                                                                                             >  1:390554/1‑230 (MQ=255)                                        tGCAAAACAATTAACCTAAATTCGGACCGGGAAGCCGGTTCCACATGGCGGGCCTTCATCCGATATCGGCGTATTAATGCAAAACGTCGGCACTGCTTATGCAGTGAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGTGCGTCATTTATTGAATGATGCCGGa                                                                                                                                                                                                          <  2:682028/238‑1 (MQ=255)                                          tctggcggtgctaaacaattaacctacattctgaccgggaagcagggtccacatggcgggcgttcatccgatatcggcgtattaatgcaaaacgtcggcactgcttatgcagtgaatcgtgccgttattgatggcgagccgattaccgagcgtgttgtaaccctgactggcgaagcaatcgctcgcccgggcaacgGCTGGGGACGCCAGTGCGTCATTTATTGAATGATGCCGGATTc                                                                                                                                                                                                       <  2:228737‑M2/43‑1 (MQ=255)                                           tAAAAAATTTACCCTCCTTATGGCCGGGAAGCAGGTTCCAAGTGGGGGGGGTTCATCGGGGCGCGGAGTATTAATGCAAAACGTCGGCACTGCTTAGGCAGTGAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTGGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGTGCGTCATTTATTGAATGATGCCGGATTc                                                                                                                                                                                                       <  1:86504/238‑1 (MQ=255)                                                  ttAACCTACATTCTGACCGGGAAGCAGGTTCCACATGGCGGGCGTTCATCCGATATCGGCGTATTAATGCAAAACGTCGGCACTGCTTATGCAGTGAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCGCGCCCGGGCAACGTCTGGGCACGGCCGGGGGCGCCAGTGCGTGCTTCCTTGAATGGTTCCGGGTTATGTCCct                                                                                                                                                                                                >  2:187779/1‑238 (MQ=255)                                                    ctaaacaattaacctacattctgaccgggaagcaggttccacatggcgggcgttcatccgatatcggcggattaatgcaaaacgtcggcactgcttatgcagtgaaacgtgccgttattgatggcgagccgattaccgagcgtgttgtaaccctgactggcgaagcaatcgcccgccccgggaacgGCTTGGGGCGCCAGGGCGTCATTTATTGAATAATGCCGGCTTCTTCCCccct                                                                                                                                                                                              >  2:599025‑M2/187‑238 (MQ=255)                                                       cTACATTCTGACCGGGAAGCAGGTTCCACATGGCGGGCGTTCATCCGATATCGGCGTATTAATGCAAAACGTCGGCACTGCTTATGCAGTGAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCt                                                                                                                                                                                                                                               <  2:754978/186‑1 (MQ=255)                                                          cATTCTGACCGGGAAGCAGGTTCCACATGGCGGGCGTTCATCCGATATCGGCGTATTAATGCAAAACGTCGGCACTGCTTATGCAGTGAAACGTGCCGTTATTTATGGCGAGCCGATTACCGATCGTGTTGTAACCCTTCCTGGCGAAGCAATCGCTCTCCCGGGCAACGCCTGGGCACGGCTGGGGCCCCCAGTCGGTCCTTTTTTGATTGATACTCGATTCTGCCCCTCTGcccacc                                                                                                                                                                                       >  1:153646/1‑235 (MQ=255)                                                               tGACCGGGAAGCCGGTTCCACATGGCGGGGCTTCTCCCGTTATCGGCGTATTAATTCAAAACGTCGGCACTGCTTATGCAGTGAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGGGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGTGCGTCATTTATTGAATGATGCCGGATTCTGCCCCTCTGCCGATCAAATg                                                                                                                                                                                  <  1:521863/239‑1 (MQ=255)                                                               tGACCGGGAAGCAGGTTCCACATGGCGGGCGTTCATCCGATATCGGCGTATTAATGCAAAACGTCGGCACTGCTTATGCAGTGAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGTGCGTCATTTATTGAATGATGCCGGATTCTGCCCCTCTGCCGATCAAATg                                                                                                                                                                                  <  2:740143/239‑1 (MQ=255)                                                                              ttCCACATGGCGGGCGTTCATCCGATATCGGCGTATTAATGCAAAACGTCGGCACTGCTTATGCAGTGAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGa                                                                                                                                                                                                                                          <  2:219231/168‑1 (MQ=255)                                                                               tcccatgggcgggtgTTCATCCGATTTCGGCTTATTAATGCAAAACGTCGGCACGGTTTAGGCAGTGAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGTGCGTCATTTATTGAATGATGCCGGATTCTGCCCCTCTGCCGATCAAATGGTGATTATGGGTGGcc                                                                                                                                                                  <  1:835722/232‑1 (MQ=255)                                                                               tCCCCATGGGGGGGGTTCACCCGATATCGGCGTATTAATGCAAAACGTCGGCACTGCTTATGCAGTGAAACGGTCCGTTATGGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGTGCGTCATTTATTGAATGATGCCGGATTCTGCCCCTCTGCCGATCAAATGGTGATTATGGGTGGcc                                                                                                                                                                  <  1:237402/239‑1 (MQ=255)                                                                                ccACATGGCGGGCGTTCATCCGATATCGGCGTATTAATGCAAAACGTCGGCACTGCTTATGCAGTGAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGTGCGTCATTTATTTAATGATGCCGGATTCTTCCCCTCTGCCGTTCAAATGGTGATTATGGGTGGcc                                                                                                                                                                  >  2:638964/1‑238 (MQ=255)                                                                                cagcctGGCGGGCTTTCATCCGATAACGGCGTATTAATTCAAAACGGCGGCACTGCTTAAGCAGTGAAACGGGCCGTTAGTGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGTGCGTCATTTATTGAATGATGCCGGATTCTGCCCCTCTGCCGATCAAATGGTGATTATGGGTGGcc                                                                                                                                                                  <  2:561843/233‑1 (MQ=255)                                                                                     tgggggggttttctCCGTTATCGGCGTTTTAAGTCAAAAGGGCGGCGTTGCTGATGCAGTGAAACGTGCCGTTATTGATGGGGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGTGCGTCATTTATTGAATGATGCCGGATTCTGCCCCTCTGCCGATCAAATGGTGATTATGGGTGGCCCGCTaa                                                                                                                                                            <  1:38701/226‑1 (MQ=255)                                                                                       gcgggcgTTCAACCGATATCGGCGTATTAAGGCAAACCGTCGGCACTGCTTATGCAGTGAACCGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGTGCGTCATTTATTGAATGATGCCGGATTCTGCCCCTCTGCCGATCAAATGGTGATTATGGGTGGCCCGCTaa                                                                                                                                                            <  2:921360/237‑1 (MQ=255)                                                                                              ttCATCCGATATCGGCGTATTAATGCAACACGTCGGCACTGCTTATGCCGTGAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGACGCAATCGCCCGCCCGGGCAACGTCTGGGCACGCCCTGGGAAGCCCGTGCGCTCCTTATTGCATGAGTCGGGCTTGTGCCCCCCCCCCGCTGAAATGGTGGTTATggtgggcaccccaacgggcccg                                                                                                                                                    >  1:561843/1‑218 (MQ=255)                                                                                                    ggcgttcatccgatatcggcgtattaatgcaaaacgtcggcactgcttatgcagtgaaacgtgccgttattgatggcgagccgattaccgagcgtgttgtaaccctgactggcgaagcaatcgctcgcccgggcaacgGCTGGGGGCGCCAGTGCGGCATTTATTGAATGATGCCGGATTCTGCCCCCCTGCCGATCAAATGGGGATTATGGGGGGCCCCCCAATGGGCTTTACCTTg                                                                                                                                              >  1:208495‑M2/139‑238 (MQ=255)                                                                                                       tatCGGCGTATTAATGCAAAACGTCGGCACTGCTTATGCAGTGAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGTGCGTCATTTATTGAATGATGCCGGATTCTGCCCCTCTGCCGATCAAATGGTGAt                                                                                                                                                                             <  2:251184/204‑1 (MQ=255)                                                                                                                          aaCGTCGGCACTGCTTATGCAGTGAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGTGGAGCCCAGTGCGTCCTTTATTGAATGATGCCGGATTCTGCCCCCCTGCCCATCAATTGGGGATTATGGGTGGCCCGCAAAGTGGCTTTTCCTGGCCATGCCGTGTAGTCCCGGtgga                                                                                                                       >  1:659145/1‑236 (MQ=255)                                                                                                                          aaCGTCGGCACTGCTTATGCAGTGAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGTGCGTCATTTATTGAATGATGCCGGATTCTGCCCCTCTGCCGATCAAATGGTGATTATGGGTGGCCCGCTAATGGGCTTTACCTTGCCATGCCTGGATGTCCCGGTCGt                                                                                                                       >  2:945289/1‑239 (MQ=255)                                                                                                                            cgtgcgCACTGCTTATGCAGTGAAACGTGCCTGTAGTGAGGGCGAGCCGATTACCGAGCGTGTTGGAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGTGCGTCATTTATTGAATGATGCCGGATTCTGCCCCTCTGCCGATCAAATGGTGATTATGGGTGGCCCGCTAATGGGCTTTACCTTGCCATGGCTGGATGTCCCGGTCGTaa                                                                                                                     <  2:451021/234‑1 (MQ=255)                                                                                                                               cGGCACTGCTTATGCAGTGAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGTGCGTCATTTATTGAATGATGCCGGATTCTGCCCCTCTGCCGATCAATTGGTGATTATGGGTGGCCCGCTAATGGGCTTTACCTTGCCATGGCTGGATGTCCCGGCCGTAAGGa                                                                                                                  >  2:732833/1‑239 (MQ=255)                                                                                                                                             cAGTGAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGTGCGTCATTTATTGAATGATGCCGGATTCTGCCCCTCTGCCGATCAAATg                                                                                                                                                                                  <  2:457883/161‑1 (MQ=255)                                                                                                                                                 gAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGTGCGTCATTTATTGAATGATGCCGGATTCTGCCCCTCTGCCGATCAAATGGTGATTATGGGTGGCCCGCTAATGGGCTTTACCTTGCCATGGCTGGATGTCCCGGTCGTAAAGATTACCAAct                                                                                                         <  2:962616/230‑1 (MQ=255)                                                                                                                                                 gAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGTGCGTCATTTATTGAATGATGCCGGATTCTGCCCCTCTGCCGATCAAATGGTGATTATGGGTGGCCCGCTAATGGGCTTTACCTTGCCATGGCTGGATGTCCCGGTCGTAAAGATTACCAAct                                                                                                         >  1:962616/1‑230 (MQ=255)                                                                                                                                                 gAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGGCCGTCATTTATTGAATGATGCCGGGATCGGCCCCTCTGCCGACCAAATGGTGATTATGGGTGGCCCGCTAATGGGCCTTAACTTGCCAAGGCTGGATTGCCCGGCGGTAAAAATTACAAAcatgtcaatg                                                                                                 >  1:78463/1‑229 (MQ=255)                                                                                                                                                  cttatgcagtgaaacgtgccgttattgatggcgagccgattaccgagcggttgtaaccctgactggcgaagcaatcgctcgcccgggcaacgGCTGGGGACGCCAGTGCGTCATTTATTGAATGATGCCGGATTCTGCCCCCCTGCCGGTCAAATGGTGATTATGGGTGGCCCGCTAATGGGCTTTACCTTGCCATGGCTGGATGTCCCGGGCGTAAAGATTCCCAACCGTCTTTTgg                                                                                                >  1:694112‑M2/93‑238 (MQ=255)                                                                                                                                                             tATTGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGTGCGTCATTTATTGAATGATGCCGGATTCTGCCCCTCTGCCGATCAAATGGTGATTATGGGTGGCCCGCTAATGGGCTTTACCTTGCCATGGCTGGATGTCCCGGTCGTAAAGATTACCAACTGTCTGTTGGCTCCCTCTG‑cc                                                                                    <  2:390554/238‑1 (MQ=255)                                                                                                                                                               tggggggCGGGCCGGTTCCCGGGGGTGTGGACACCCTGACGGGCGAAGTAATCGCTCGCCCGGGCAAGGGCTGGGCACGGCTGGGGACGCCAGTGCGTCATTTATTGAATGATGCCGGATTCTGCCCCTCTGCCGATCAAATGGTGATTATGGGTGGCCCGCTAATGGGCTTTACCTTGCCATGGCTGGATGTCCCGGTCGTAAAGATTACCAACTGTCTGTTGGCTCCCTCTG‑CCAAt                                                                                 <  1:638964/234‑1 (MQ=255)                                                                                                                                                                    ggCGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGTGCGTCATTTATTGAATGATGCCGGATTCTGCCCCTCTGCCGATCAAATGGTGATTATGGGTGGCCCGCTAATGGGCTTTACCTTGCCATGGCTGGATGTCCCGGTCGTAAAGATTACCAACTGTCTGTTGGGCCCCTCTG‑CCAATGAACt                                                                            >  2:657211/1‑239 (MQ=255)                                                                                                                                                                      cGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGTGCGTCATTTATTGAATGATGCCGGATTCTGCCCCTCTGCCGATCAAATGGTGATTATGGGTGGCCCGCTAATGGGCTTTCCCTTGCCATGGCGGGATGTCCCGGTCGTAAAAATTACCACTTATCTGTGGGCTCCCTCAC‑CCAAAGAAATTg                                                                          >  1:584516/1‑239 (MQ=255)                                                                                                                                                                          gcctttACCGGGCGTTTTGTAGCCCTGTCGGGGGAAGCAATCGGTCGCCCGGGCAACGTCTGGCGAGGGCTGGGGACGCCAGTGCGTCATTTATTGAATGAGGCCGGATTCTGCCCCTCTGCCGATCAAATGGTGATTATGGGGGGCCCGCTAATGGGCTTTACCTTGCCATGGCTGGATGTCCCGGTCGTAAAGATTACCAACTGTCTGTTGGCTCCCTCTG‑CCAATGAACTTGGCg                                                                       <  1:850857/234‑1 (MQ=255)                                                                                                                                                                          ccggttccgggggggttggtAACCCTGACTGGGGAAGCAATCGGTGGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGTGAGTCATGTATTGAATGATGCCGGATTCGGCCCCTCTGCCGAGCAAATGGTGATTATGGGTGGCCCGCTAATGGGCTTTACCTTGCCATGGCTGGATGTCCCGGTCGTAAAGATTACCAACTGTCTGTTGGCTCCCTCTG‑CCAATGAACTTGGCg                                                                       <  1:960452/220‑1 (MQ=255)                                                                                                                                                                              tttccGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGTGCGTCATTTATTGAATGATGACGGATTCTGCCCCTCTGCCGATCAAATGGTGATTATGGGTGGCCCGCTAATGGGCTTTACCTTGCCATGGCTGGATGTCCCGGTCGTAAAGATTACCAACTGTCTGTTGGCTCCCTCTG‑CCAATGAACTTGGCGAAcc                                                                   <  2:769015/235‑1 (MQ=255)                                                                                                                                                                              ggcgagccgattaccgagcgtgttgtaaccctgactggcgaagcaatcgctcgcccgggcaacgGCTGGGGACGCCAGTGCGTCATTTATTGAATGATGCCGGATTCTGCCCCTCTGCCGATCAAATGGGGATTATGGGTGGCCCGCTAATGGGCTTTACCTTGCCATGGCTGGATGTCCCGGGCGGAAAGATTACCAACTGTCTGGTGGCTCCCTGTG‑CCAATGAAACTGGcgaaac                                                                   >  1:82708‑M2/65‑236 (MQ=255)                                                                                                                                                                                  cgggCGTTTTGTACCCCTGACTGGGGAAGCAATGGCTCCCCCGGGCAACGTCTGGGCAGGGCTGGGGACGCCTGTGCGTCATTTATTGAATGATGCCGGATTCTGCCCCTCTGCCGATCAAATGGTGATTATGGGTGGCCCGCTAATGGGCTTTACCTTGCCATGGCTGGATGTCCCGGTCGTAAAGATTACCAACTGTCTGTTGGCTCCCTCTG‑CCAATGAACTTGGCGAACCACAgg                                                              <  1:732833/236‑1 (MQ=255)                                                                                                                                                                                   gcccatttccgagcgtgttgtaaccctgactggcgaagcaatcgctcgcccgggcaacgGCTGGGGACGCCAGTGCGTCATTTATTGAATGATGCCGGATTCTGCCCCTCTGCCGATCAAATGGTGATTATGGGTGGCCCGCTAATGGGCTTTACCTTGCCATGGCTGGATGTCCCGGTCGTAAAGATTACCAACTGTCTGTTGGCTCCCTCTG‑CCAATGAACTTGGCGAACCACAgg                                                              <  2:742879‑M2/179‑1 (MQ=255)                                                                                                                                                                                    aGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGTGCGTCATTTATTGAATGATGCCGGATTCTGCCCCTCTGCCGATCAAATGGTGATTATGGGTGGCCCGCTAATGGGCTTTACCTTGCCATGGCTGGATGTCCCGGTCGTAATGATTACCAACTGTCTGTTGGCTCCCTCTG‑CCAATGATCTTGGGGAACCACAGga                                                             >  2:850857/1‑238 (MQ=255)                                                                                                                                                                                     ccgattaccgagcggttgtaaccctgactggcgaagcaatcgctcgcccgggcaacgGCTGGGGACGCCAGTGCGTCATTTATTGAATGATGCCGGATTCTGCCCCTCTGCCGATCAAATGGTGATTATGGGTGGCCCGCTAATGGGCTTTACCTTGCCATGGCTGGATGTCCCGGTCGTAAAGATTACCAACTGTCTGTTGGCTCCCTCTG‑CCAATGAACTTGGCGAACCACAGgaa                                                            <  2:694112‑M2/181‑1 (MQ=255)                                                                                                                                                                                              agcgtgttgtaaccctgactgtcgaagcaatcgctcgcccgggcaacgGCTGGGGACGCCAGTGCGTCATTTTTTGCATGATGCCGGATTCTGCCCCTCTGCCGATCAAATGGTGATTATGGGTGGCCCGCTAATggg                                                                                                                                                        >  2:83374‑M2/49‑138 (MQ=255)                                                                                                                                                                                                   tgccTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCCCGGGTGGGGACGCCAGTGTGTCATTTATTGAATGATGCCGGATTCTGCCCCTCTGCCGATCAAATGGTGATTATGGGTGGCCCGCTAATGGGCTTTACCTTGCCATGGCTGGATGTCCCGGTCGTAAAGATTACCAACTGTCTGTTGGCTCCCTCTG‑CCAATGAACTTGGCGAACCACAGGAAGAACAAAGCTGCATc                                             <  2:210917/236‑1 (MQ=255)                                                                                                                                                                                                    ttgtaaccctgactggggaagcaatcgctcgcccgggcaacgGCTGGGGACGCCAGTGCGTCATTTATTGAATGATGCCGGATTCTGCCCCTCTGCCGATCAAATGGTGATTATGGGTGGCCCGCTAATGGGCTTTACCTTGCCATGGCTGGATGTCCCGGTCGTAAAGATTACCAACTGTCTGTTGGCTCCCTCTG‑CCAATGAACTTGGCGAACCACAGGAAGAACAAAGCTGCATcc                                            <  2:208495‑M2/197‑1 (MQ=255)                                                                                                                                                                                                    gtcggccgagggcagccgttgcacGGGCACCGTCCGGGCAGGGCTCGGGTCGCAAGTGCGTCATTGATGGAATGAGTCCGGTTTCTGCCCCTCTGCCGTGCAAATGGTGATTAGGGGTGGCTCGCTACTGGGCTTTCCCTTGCCATGGCTGGATGTCCCGGTCGTAAAGATTACCAACTGTCTGTTGGCTCCCTCTG‑CCAATGAACTTGGCGAACCACAGGAAGAACAAAGCTGCATcc                                            <  1:187779/216‑1 (MQ=255)                                                                                                                                                                                                     aCTGGCGAAGGAATCACTCCCCCGGGTGAAGTCCGGGCACGGCCTGGGCGGACCGTGCGTCAATTATTGTATGATGCCGGTTTCTGCCCCTCTCCCGATCTATTGGTGATTATGGGTGGCCCGCTAATGGGATTTCCCTTTCCATGTCTGGAAGGACCGGCCAGACAGATTCCCCACTGCCTGTCGGCTCCC‑CTGCCCACTCAACTTGCCAGACCTCAGGAAAAACAAGACTGCCTCCg                                           >  1:889472/1‑239 (MQ=255)                                                                                                                                                                                                     aCTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGTGCGTc                                                                                                                                                                                                                              >  2:560497/1‑61 (MQ=255)                                                                                                                                                                                                     aCTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGTGCGTc                                                                                                                                                                                                                              <  1:560497/61‑1 (MQ=255)                                                                                                                                                                                                     aCTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGTGCGTCATTTATTGAATGATGCCGGATTCTGCCCCTCTGCCGATCAAATGGTGATTATGGGTGGCCCGCTAATGGGCTTTACCTTGCCATGGCTGGATGTCCCGGTCGTAAAGATTACCAACTGTCTGTTGGCTCCCTCTG‑CCAATGAACTTGGCGAACCACAGGAAGAACAAAGCTGCATCCg                                           >  2:272797/1‑239 (MQ=255)                                                                                                                                                                                                     aCTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGTGCGTCATTTATTGAATGATGCCGGATTCTGCCCCTCTGCCGATCAAATGGTGATTATGGGTGGCCCGCTAATGGGCTTTACCTTGCCATGGCTGGATGGCCCGGGCGTAAAGATTACCAACTGTCTGTTGGCTCCCCCTG‑CCACGGACCTTGGCGAACCCAAGGAAGAAAAAAACTCCATCCg                                           >  1:332258/1‑239 (MQ=255)                                                                                                                                                                                                         accctggcgggcgaagcaaacgctcggccgggccacgGCTGGGGTCGCCAGGGCGTCATTTATTGAATGGTGCCGGATTCTGCCCCTCTGCCGATCAAATGGTGATTATGGGTGGCCCGCTAATGGGCTTTACCTTGCCATGGCTGGATGTCCCGGTCGTAAAGATTACCAACTGTCTGTTGGCTCCCTCTG‑CCAATGAACTTGGCGAACCACAGGAAGAACAAAGCTGCATCCGgtgt                                       <  2:465089‑M2/202‑1 (MQ=255)                                                                                                                                                                                                              gactggcgaagccagccgtcgcccggggaacgGCTGGGGACGCCAGTGCGTCATTTATTGAATGATGCCGGATTCTGCCCCTCTGCCGATCAAATGGTGATTATGGGTGGCCCGCTAATGGGCTTTACCTTGCCATGGCTGGATGTCCCGGTCGTAAAGATTACCAACTGTCTGTTGGCTCCCTCTG‑CCAATGAACTTGGCGAACCACAGGAAGAACAAAGCTGCATCCGGTGTAgcgc                                  <  2:82708‑M2/207‑1 (MQ=255)                                                                                                                                                                                                                aaTGGCTCGCCCGGGCAACGTCTGGGCACGGTTGGGGACGCCAGTGCGTCATTTATTGAATGATGCCGGATTCTGCCCCTCTGCCGATCAAATGGTGATTATGGGTGGCCCGCTAATGGGCTTTACCTTGCCATGGCTGGATGTCCCGGTCGTAAAGATTACCAACTGTCTGTTGGCTCCCTCTG‑CCAATGAACTTGGCGAACCACAGGAAGAACAAAGCTGCATCCGGTGTAgcgc                                  <  2:584516/237‑1 (MQ=255)                                                                                                                                                                                                                              gCAACGTCTGGGCACGGCTGGGGACGCCAGTGCGTCATTTATTGAATGATGCCGGATTCTGCCCCTCTGCCGATCAAATGGTGATTATGGGTGGCCCGCTAATGGGCTTTACCTTGCCATGGCTGGATGTCCCGGTCGTAAAGATTACCAACTGCTTGTTGGCTCCCCCTG‑CCAATGAACTTGGCGAACCCCAGGAGAAAAAAAGCGGCATCGGGGGAAACGcccggggcgaggccgg                   >  1:832353/1‑224 (MQ=255)                                                                                                                                                                                                                                             ggCTGGGGACGCCAGTGCGTCATTTATTGCATGATGCCGGATTCTGCCCCTCTGCCGCTCACATGGTGCTTATGGGTGGCCCGCTCCTGGCCTTTCCCTTGCCCTGGCTGGATGTCCCGGTCGTAACGCTTACCAACTGTCTGTTGGCTCCCTCTG‑CCCATGAACTAGGCGCCACACAGGAAGACAAAAGCTGACCCCGGGCTAGCGCCCCTGTGAACGCCCGCCCAGCGGCCCtttt    >  1:545656/1‑238 (MQ=255)                                                                                                                                                                                                                                              gCTGGGGACGCCAGTGCGTCATTTGTTGAATGATGcc                                                                                                                                                                                                             <  2:17399/37‑1 (MQ=255)                                                                                                                                                                                                                                              gCTGGGGACGCCAGTGCGTCATTTGTTGAATGATGcc                                                                                                                                                                                                             >  1:17399/1‑37 (MQ=255)                                                                                                                                                                                                                                              gCTGGGGACGCCAGTGCGTCATTTATTGAATGATGCCGGATTCTGCCCCTCTGCCGATCAAATGGTGATTATGGGTGGCCCGCTAATGGGCTTTACCTTGCCATGGCTGGATGTCCCGGTCGTAAAGATTGCCAACCGCCTGTTGGCCCCCTCGG‑CCCAGGAACTTGGCGAACCACAGGAAGAACCAACCTGCCTCCGGGGTAGGGCATGTAGTGACGccgacccccggggcctttggg  >  1:300545/1‑220 (MQ=255)                                                                                                                                                                                                                                              gCTGGGGACGCCAGTGCGTCATTTATTGAATGATGCCGGATTCTGCCCCTCTGCCGATCAAATGGTGATTATGGGTGGCCCGCTAATGGGCTTTACCTTGCCATGGCTGGATGTCCCGGTCGTAAAGATTACCAACTGTCTGTTGGCTCCCTCTG‑CCAATGAACTTGGCGAACCACAGGAAGAACAAAGCTGCATCCGGTGTAGCGCCTGTGCGGACGCCTGCCCTCCGGACCTTTTg   >  2:269757/1‑238 (MQ=255)                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                                TCTCTGCGGGTGATTCCAACCAAATATCCTT‑CTGGCGGTGCTAAACAATTAACCTACATTCTGACCGGGAAGCAGGTTCCACATGGCGGGCGTTCATCCGATATCGGCGTATTAATGCAAAACGTCGGCACTGCTTATGCAGTGAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGTGCGTCATTTATTGAATGATGCCGGATTCTGCCCCTCTGCCGATCAAATGGTGATTATGGGTGGCCCGCTAATGGGCTTTACCTTGCCATGGCTGGATGTCCCGGTCGTAAAGATTACCAACTGTCTGTTGGCTCCCTCTG‑CCAATGAACTTGGCGAACCACAGGAAGAACAAAGCTGCATCCGGTGTAGCGCCTGTGCTGACGCCTGCCCTGCGGATCTTTTGC  >  NC_000913/1707621‑1708095

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.