New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	458787 =	58 (0.600)	41 (0.430)	34/426	NT	41.8%	intergenic (+87/‑101)	clpX/lon	ATPase and specificity subunit of ClpX‑ClpP ATP‑dependent serine protease/DNA‑binding ATP‑dependent protease La
	?	NC_000913	608011 =	NA (NA)					intergenic (+23/‑54)	hokE/insL1	toxic polypeptide, small/IS186 transposase

CATGGTCCATCGCCGCTTCCAGACAACGGATAGATTTTTCCCGCCCGACAAATAAGGGGATGACCATGTGCGGATAAACCACCACATCGCGCAGCGGCAATACGGGGATTTCAATGCGTTCAGAACGCTCAGGATTCATAGAGCTCTCTCTTAGTTTAATTTCCGCCAGGTAATCAGATGACACGACTGTGCTTCACGCCATCTATTAACATGTACGTCAGTATATGGGGATGTTTCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/459026‑458787 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGGGGCTCTAACCCGCCGCCGCGAAATTCGTGATGCTGCAACTCTGCTACGTCTGGGGCTGGCTTACGGCCCCGGGGGGATGTCATTACGTGAAGTCAC  >  NC_000913/608011‑608246                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              tctggctCATCGCCCCTTCCAGACAACGGATAGATTTTTCCCGCCCGACAAATAAGGGGATGGCCATGTCCGGATAAACCACCACATCGCGCAGCGGCAATACGGGGATTTCAATGCGTTCAGAACGCTCAGGATTCATAGAGCTCTCTCTTAGTTTAATTTCCGCCAGGTAATCAGATGACACGACTGTGCTTCACGCCATCTATTAACATGTACGTCAGTATATGGGGATGTTTCCC                                                                                                                                                                                                                                               <  1:245473/232‑1 cctgtTCCATTGCCGGTTTCAGACAATGGCTTGATTTTTCCAGCCCGACAAATAAGGGGATGACCATGTGCTGATAAACCACCCCATCGCGCAGCGGACATACGGGGATTTCAATGAGTTCCGGACGCTCAGGATTCATAGAGCTCTCTCTTAGTTTAATTTCCGCCAGGTAATCAGATGACACGACTGTGCTTCACGCCATCTATTAACATGTACGTCAGTATAGGGGGATGTTTCCC                                                                                                                                                                                                                                               <  1:540486/234‑1         cttcCCGGTTCCAGACAACGGAATAATTTTTCCCGCCCGACAAATAAGGGGATTACCATGTGCGGAGAAACCACCCCCTCGCGCAGCGGCAATACGGGGATTTCAATGCGGTCAGAACGCTCAGGATTCATAGAGCTCTCTCTTAGTTTAATTTCCGCCAGGTAATCAGATGACACGACTGTGCTTCACGCCATCTATTAACATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCG                                                                                                                                                                                                                                       <  1:9060/235‑1                CTTCCAGACAACGGATAGATTTTTCCCGCCCGACAAATAAGGGGATGACCATGTGCGGATAAACCACCACATCGCGCCGCGGCAATACGGGGATTTCAATGCGTTCAGAACGCTCAGGATTCAAAGAGCTCTCTCTTAGTTTAATTTCGGCCAGGTAATCAGATGATCCGACTTTGCTTCACGCCATCTATTAACATGTACGTCAGTATATGGAGCTGTTTCCCCAacactaaacacag                                                                                                                                                                                                                                >  1:387814/1‑226                CTTCCAGACAACGGATAGATTTTTCCCGCCCGACAAATAAGGGGATGACCATGTGCGGATAAACCACCACATCGCGCAGCGGCAATACGGGGATTTCAATGCGTTCAGAACGCTCAGGATTCATAGAGCTCTCTCTTAGTTTAATTTCCGCCAGGTAATCAGATGACACGACTGTGCTTAACGCCATCTATTAACATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCGCTAACTT                                                                                                                                                                                                                                >  2:493167/1‑239                        cacCGGTTAGATTTTTCCCACCCGAAAAATAACGGGATGGCCATGGGTGGATAAGCCACCACATCGCGGAGCGGCAATACTGGTATTTCAACGCCGTCATAACGCTCAGGATTCATAGAGCTCTCTCCTAGTTTAATTTCAGCCAGGTAAACAGATGACACGACTGTGCTTCACGCCATCTATTAACATGTACGGCAGTATATGGGGATGTTTCCCCATAAGCGCTAACTTAAGGGGTG                                                                                                                                                                                                                        <  1:197866/236‑1                         AACGGATAGATTTTTCCCGCCCGACAAATAAGGGGATGACCATGTGCGGATAAACCACCACATCGCGCAGCGGCAATACGGGGATTTCAATGCGTTCAGAACGCTCAGGATTCATAGAGCTCTCTCTTAGTTTAATTTCCGCCAGGTAATCAGATGACACGACTGTGCTTCACGCCATCTATTAACATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCGCTAACTTAAGGGTTGT                                                                                                                                                                                                                       <  2:277018/239‑1                           CGGATAGATTTTTCCCGCCCGACAAATAAGGGGATGACCATGTGCGGATAAACCACCACATCGCGCAGCGGCAATACGGGGATTTCAATGCGTTCAGAACGCTCAGGATTCATAGAGCTCTCTCTTAGTTTAATTTCCGCCAGGTAATCAGATGACACGACTGTGCTTCACGCCATCTATTAACATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCGCTAACTTAAGGGTTGTGG                                                                                                                                                                                                                     >  2:720715/1‑239                                      TTCCCGCCCGACAAATAAGGGGATGACCATGTGCGGATAAACCACCACATCGCGCAGCGGCAATACGGGGATTTCAATGCGTTCAGAACGCTCAGGATTCATAGAGCTCTCTCTTAGTTTAATTTCCGCCAGGTAATCAGATGACACGACTGTGCTTCACGCCATCTATTAACATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTG                                                                                                                                                                                                          >  2:262271/1‑239                                                           GATGACCATGTGCGGATAAACCTCCACATCGCGCATCGGCAATACGGGGATTTCAATGCGTTCAGAACGCTCAGGCTTCCTAGAGCTCTCTCTTAGTTTAATTTCCGCCAGGTAATCAGAGGCCCACACTGTGCTTCACGCCATTTATTAACATTTCCGTCAGTATATGGGGATGTTTCCCCATAAGCGCTAACTTAAGGGATGTGTAATTAGCCCTGATATACTTTAACGTGCCacta                                                                                                                                                                                     >  1:1272374/1‑235                                                                 CATGTGCGGATAAACCCCCACATCGCGCAGCGGCAATACGGGGATTTCAATGCGTTCAGAACGCTCAGGATTCATAGAGCTCTCTCTTAGTTTAATTTCCGCCAGGTAATCAGATGACACGACTGTGCTTCACGCCATCTATTAACATGTACGTCAGTATATGGGGATGTTT‑CCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACT                                                                                                                                                                              <  2:1163232/239‑1                                                                              ACCACCACATCGCGCAGCGGCAATACGGGGATTTCAATGCGTTCAGAACGCTCAGGATTCATAGAGCTCTCTCTTAGTTTAATTTCCGCCAGGTAATCAGATGACACGACTGTGCTTCACGCCATCTATTAACATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCGC                                                                                                                                                                                                                                      <  2:648580/171‑1                                                                              ACCACCACATCGCGCAGCGGCAATACGGGGATTTCAATGCGTTCAGAACGCTCAGGATTCATAGAGCTCTCTCTTAGTTTAATTTCCGCCAGGTAATCAGATGACACGACTGTGCTTCACGCCATCTATTAACATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCGC                                                                                                                                                                                                                                      >  1:648580/1‑171                                                                               CCACCACATCGCGCAGCGGCAATACGGGGATTTCAATGCGTTCAGAACGCTCAGGATTCATAGAGCTCTCTCTTAGTTTAATTTCCGCCAGGTAATCAGATGACACGACTGTGCTTCACGCCATCTATTAACATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTG                                                                                                                                                                 >  2:891747/1‑239                                                                                  CCACATCGCGCAGCGGCAATACGGGGATTTCAATGCGTTCAGAACGCTCAGGATTCATAGAGCTCTCTCTTAGTTTAATTTCCGCCAGGTAATCAGATGACACGACTGTGCTTCACGCCATCTATTAACATGAACGTCAGTATATGGGGATGTTTCCCCATAAGCGCTAACTTAGGGGTTGTGGAATTAGGCCGGAATTGATTTACAGTGCCGGAGAATTATTTTCACGATAACTGGac                                                                                                                                                              >  1:593643/1‑237                                                                                   CACATCGCGCAGCGGCAATACGGGGATTTCAATGCGTTCAGAACGCTCAGGATTCATAGAGCTCTCTCTTAGTTTAATTTCCGCCAGGTAATCAGATGACACGACTGTGCTTCACGCCATCTATTAACATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCA                                                                                                                                                             >  2:107040/1‑239                                                                                    ACATCGCGCAGGGGCAATACGGGGATTTCAATGCGTTCAGACCGCTCCGGATTCATAGAGCTCTCTCTTAGTTGAATTTCCGCCAGGTAATCAGATGACACGACTGTGCTTCACGCCATCTATTAACATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAG                                                                                                                                                            <  2:555822/239‑1                                                                                        CGCGCAGCGGCAATACGGGGATTTCAATGCGTTCAGAACGCTCAGGATTCATAGAGCTCTCTCTTAGTTTAATTTCCGCCAGGTAATCAGATGACACGACTGTGCTTCACGCCATCTATTAACATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAAT                                                                                                                                                        >  2:398554/1‑239                                                                                                   tatgtggggtttttaaatcgtctAGAACGGTCAGGATTCAAAGGTCCTTCTCTTAGTTTAATTTCCGCCATGTAATCAGATGACACGACTGTGCTTCACGACATCTATTAACATGTACGGCAGTATATGGGGATGTTTCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATA                                                                                                                                             <  1:249095/216‑1                                                                                                               tcaattgcTTCAAAACGCTTAGGTTTCATAGTGTTTTTCCTTTGTTTAATTTCCGCCAGGTAATCAGGTGACACGCTTGTTCTTCACGCCCTCTATTAACATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCG                                                                                                                                 <  1:591254/231‑1                                                                                                                    gtctttcgaaccgTCAGGATTCATAGGGCTCTCTCTTAGTTTAATTTCCGCCATGTAATCAGATGACATGACTGTGCTTCACGCCATCTATTAACATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAA                                                                                                                            <  1:398554/226‑1                                                                                                                       TTCAGAACGCTCAGGATTCATAGAGCTCTCTCTTAGTTTAATTTCCGCCAGGTAATCAGATGACACGACTGTGCTTCACGCCATCTATTAACATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTG                                                                                                                         >  2:424054/1‑239                                                                                                                        TCAGAACGCTCAGGATTCATAGAGCTCTCTCTTAGTTTAATTTCCGCCAGGTAATCAGATGACACGACTGTGCTTCACGCCATCTATTAACATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCGC                                                                                                                                                                                                                                      >  1:403571/1‑129                                                                                                                        TCAGAACGCTCAGGATTCATAGAGCTCTCTCTTAGTTTAATTTCCGCCAGGTAATCAGATGACACGACTGTGCTTCACGCCATCTATTAACATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCGC                                                                                                                                                                                                                                      <  2:403571/129‑1                                                                                                                                             aatcttTCTCTTAGTTTAATTTCCGCCAGTAAATCAGAGGACCCGATTTTGCTTCACGCCATCTATTAACATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCG                                                                                                   <  1:891747/233‑1                                                                                                                                                          GTTTAATTTCCGCCAGGTAATCAGATGACACGACTGTGCTTCACGCCATCTATTAACATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGGGGCTCTAACCC                                                                                       >  2:864717/1‑238                                                                                                                                                             TAATTTCCGCCAGGTAATCAGATGACACGACTGTGCTTCACGCCATCTATTAACATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCCCGTAATGCCGGGGCTCTAACCCGCC                                                                                    >  2:263260/1‑238                                                                                                                                                                                              TGCTTCACGCCATCTATTAACATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTAGCCCATATTGGTAAACCCGAAGAACTGGAAACTTCGGCACCTAATGCCCGGGGTTCAACCAGCCGCCCGGAAATTCGTGATGCTGCAACcttcct                                                     >  1:775041/1‑230                                                                                                                                                                                                   CACGCCATCTATTAACATGTACGTCAGTCTATGGGGATGTTTCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATCTGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCACATTGGTAAGCCCGACGAACTGAAAACTTCCGCACGTAATGCCGGGGCTCTAACCCGCCCCCCCGAAATTTGGGATGCTcaaaaccgggaaggtcagg                                             >  1:1085068/1‑220                                                                                                                                                                                                    ttttaagggccagtacttttCGTCAGTTTTTGGGGTTTTTTCCCCATAAGCGCTAACTTAAGGGTTGGTGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGGGGCTCTAACCCGCCGCCGCGAAATTCGTGATGCTGCAACTCTGCTACGTCTGGG                                            <  1:534418/219‑1                                                                                                                                                                                                     CGCCATCTATTAACATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGGGGCTCTAACCCGCCGCCGCGAAATTCGTGATGCTGCAACTCTGCTACGTCTGGG                                            >  2:926464/1‑238                                                                                                                                                                                                     CGCCATCTATTAACATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGGGGCTCTAACCCGCCGCCGCGAAATTCCTGTTGCTGCAACTCTGCTACGTCTGGG                                            >  2:90098/1‑238                                                                                                                                                                                                          TCTATTAACATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGGGGCTCTAACCCGCCGCCCCGAAATTCGTGAGGCTGCAACTCTGCTACGGCTGGGGCGGGC                                      >  1:258030/1‑239                                                                                                                                                                                                                  CATGTACGTCAGTATATGGGGATTTTTCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGGGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGGGGCTCTAACCCGCCGCCGCGAAATTCGTGATGCTGCAACTCTGCTACGTCTGGGGCTGGCTTACGGCC                              <  2:569951/239‑1                                                                                                                                                                                                                      TACGTCAGTATATGGGGATGTTTCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATCCCGGGGCTCTAACCCGCCGCCGCGAAATTCGTGCTGCTGCAACTCTGCTACGCCTGGGGCTGGCTTACGGCCCCGG                          >  2:39286/1‑239                                                                                                                                                                                                                      TACGTCAGTATATGGGGATGTTTCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAAAACTGGATACTTCGGCACGTAATGCCGGGGCTCTAACCCGCCGCCGCGAAATTCGTGATGCTGCAACTCTGCTACGTTCGGGCCTGGCTTCCGGCCCCGG                          >  1:372633/1‑239                                                                                                                                                                                                                            AGTATATGGGGATGTTTCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGGGGCTCTAACCCGCCGCCGCGAAATTCGTGATGCTGCAACTCTGCTACGTCTGGGGCTGGCTTAC                                  >  2:534418/1‑225                                                                                                                                                                                                                              TATATGGGGATGTTTCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGGGGCTCTAACCCGCCGCCGCGAAATTCGTGATGCTGCAACTCTGCTACGTCTGGGGCTGGCTTACGGCCCCGGGGGGATGT                  >  2:60489/1‑239                                                                                                                                                                                                                                TATGGGGATGTTTCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGGGGCTCTAACCCGCCGCCGCGAAATTCGTGATGCTGCAACTCTGCTACGTCTGGGGCTGGCTTACGGCCCCGGGGGGATGTCA                >  2:1091789/1‑239                                                                                                                                                                                                                                 ATGGGGATGTTTCCCCAAAAGCGCTAACTTAAGGGTTGGGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGGGGCTCTAACCCGCCGCCGCGAAATTCGTGATGCTGCAACTCTGCTACGTCTGGGGCTGGCTTACGGCCCCGGGGGGATGTCAT               <  2:372633/239‑1                                                                                                                                                                                                                                   GGGGATGTTTCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGACGAACTGGATACTTCGGCACGTAATGCCGGGGCCCTAACCCGCCCCCACGACATTCGTGATGCTCCAACCTTGCGCCGTCTGGGCCGGCGTTACGCCCCCGGGGGGGTGTCATT              >  1:391242/1‑238                                                                                                                                                                                                                                        TGTTTCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGGGGCTCTAACCCGCCGCCGCGAAATTCGTGATGCGCCAAATCTGCTACGCCTGGGGCTGGCTTCCGGCCCCGGGGGGCGGGCATTACGGGA        >  1:941196/1‑239                                                                                                                                                                                                                                        TGTTTCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAA                                                                                                                                                                    <  2:166934/83‑1                                                                                                                                                                                                                                        TGTTTCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAA                                                                                                                                                                    >  1:166934/1‑83                                                                                                                                                                                                                                          TTTCCCCATAAGCGCTAACTTACGGGGTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCCCGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGTAACGTAATGCCGGGGCTCTAACCCGCCGCCCCGAAATTCGTGATGCTGCAACTCTGCACCGCGTGGGGATGGCTTCCGGCCCGCGGGGGATGGCATTAACTGAAG      >  1:486838/1‑239                                                                                                                                                                                                                                            TCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGGGGCTCTAACCCGCAGCCGCGCAATTCGTGATGCTGCAACCCTGCTACGACTGGGGCTGGCTTACGGCCCCGGGGGGCTGTGATTACGTGAAGT     >  2:42936/1‑238                                                                                                                                                                                                                                              CCCATAAGCCCTAACTTAAGGGTTGTGGTATTACCCCTGATATGATTTAACGTGCCGATGAATTACTCTCCCGATAACTGGGCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGGGGCTCTAACCCGCCGCCGCGAAATTCGTGATGCTGCAACTCTGCTACGTCTGGGGCTGGCTTACGGCCCCGGGGGGATGTCATTACGTGAAGTCAC  <  2:1076774/239‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              CATGGTCCATCGCCGCTTCCAGACAACGGATAGATTTTTCCCGCCCGACAAATAAGGGGATGACCATGTGCGGATAAACCACCACATCGCGCAGCGGCAATACGGGGATTTCAATGCGTTCAGAACGCTCAGGATTCATAGAGCTCTCTCTTAGTTTAATTTCCGCCAGGTAATCAGATGACACGACTGTGCTTCACGCCATCTATTAACATGTACGTCAGTATATGGGGATGTTTCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/459026‑458787 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGGGGCTCTAACCCGCCGCCGCGAAATTCGTGATGCTGCAACTCTGCTACGTCTGGGGCTGGCTTACGGCCCCGGGGGGATGTCATTACGTGAAGTCAC  >  NC_000913/608011‑608246

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.