| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,619,080 | Δ35 bp | intergenic (‑172/‑6) | marC ← / → marR | UPF0056 family inner membrane protein/transcriptional repressor of multiple antibiotic resistance |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1619080 | 1619114 | 35 | 50 [0] | [1] 51 | marC/marR | UPF0056 family inner membrane protein/transcriptional repressor of multiple antibiotic resistance |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1619079 | 0 (0.000) | 47 (1.210) | 44/272 | 0.0 | 99.0% | intergenic (‑171/‑41) | marC/marR | UPF0056 family inner membrane protein/transcriptional repressor of multiple antibiotic resistance |
| ? | NC_000913 | 1619115 = | 1 (0.030) | intergenic (‑207/‑5) | marC/marR | UPF0056 family inner membrane protein/transcriptional repressor of multiple antibiotic resistance | |||||
GGTTATCAGCGAAAAGTATAAGGGGTAAACAAGGATAAAGTGTCACTCTTTAGCTAGCCTTGCATCGCATTGAACAAAACTTGAACCGATTTAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1618934‑1619079‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggcaaCTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCACAGTTTAAGGT > NC_000913/1619115‑1619253 GGTTATCAGCGAAAAGTATAAGGGGTAAACAAGGATAAAGTGTCACTCTTTAGCTAGCCTTGCATCGCATTGAACAAAACTTGAACCGATTTAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGG > 1:379385/1‑143 CGAAAAGTATAAGGGGTAAACAAGGATAAAGTGTCACTCTTTAGCTAGCCTTGCATCGCATTGAACAAAACTTGAACCGATTTAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGCGCAACTAATG > 1:632523/1‑143 GAAAAGTATAAGGGGTAAACAAGGATAAAGTGTCACTCTTTAGCTAGCCTTGCATCGCATTGAACAAATCTTGAACCGATTTAGCAAAACATAGCAACAGACAATTCATTAATTTGACTTATACTTGCCTGGGCAACTAATGT > 2:20732/1‑143 GAAAAGTATAAGGGGTAAACAAGGATAAAGTGTCACTCTTTAGCTAGCCTTGCATCGCATTGAACAAAACTTGAACCGATTTAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAACTAATGT < 1:716689/143‑1 AAAAGTATAAGGGGTAAACAAGGATAAAGTGTCACTCTTTAGCTAGCCTTGCATCGCATTGAACAAAACTTGAACCGATTTAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTCCCTGGGCAACTAATGTG > 1:30011/1‑143 GTATAAGGGGTAAACAAGGATAAAGTGTCACTCTTTAGCTAGCCTTGCATCGCATTGAACAAAACTTGAACCGATTTAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAACTAATGTGAAAA < 2:374332/143‑1 ATAAGGGGTAAACAAGGATAAAGTGTCACTCTTTAGCTAGCCTTGCATCGCATTGAACAAAACTTGAACCGATTTAGCAAAACGTGGCATCGGTCACTTCATTCATTTGACTTTTACTTGCCTGGGCAACTAATGTGAAAAGT > 2:43697/1‑143 TAAGGGGTAAACAAGGATAAAGTGTCACTCTTTAGCTAGCCTTGCATCGCATTGAACAAAACTTGAACCGATTTAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAACTAATGTGAAAAGTA > 1:140874/1‑143 GGGTAAACAAGGATAAAGTGTCACTCTTTAGCTAGCCTTGCATCGCATTGAACAAAACTTGAACCGATTTAGCAAAACGTGGCATCGGTCAATTCATTCCTTTGACTTATACTTGCCTGGCCAACACATGTGCAAAGTACaaa > 2:114271/1‑140 ACAAGGATAAAGTGTCACTCTTTAGCTAGCCTTGCATCGCATTGAACAAAACTTGAACCGATTTAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAACTAATGTGAAAAGTACCAGCGATCT < 1:256702/143‑1 GATAAAGTGTCACTCTTTAGCTAGCCTTGCATCGCATTGAACAAAACTTGAACCGATTTAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCA > 1:419794/1‑143 TAATGTGTCACTCTTTAGCTAGCCTTGCATCGCATTGAACAAAACTTGAACCGAGATAGCAAAACGTGGCATCGGGCAATTCATTCATTTGACTTATACTTGCCTGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAAT < 2:84585/143‑1 AAAGTGTCACTCTTTAGCTAGCCTTGCATCGCATTGAACAAAACTTGAACCGCTTTCGCAAAACGTCGCATCGTTCAATTCATTCATTTGACTTATACATACCTGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATG > 2:147488/1‑143 tGTGTCTCTCTTTAGTTAGCCTTGCATCGCATTGAATAAAACTTGAACCGATTTAGCAAAACGTGGCATCGGTCAATGCATTCATTTGACTTATACTTGCCTGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAA < 2:240399/142‑1 GTGTCACTCTTTAGCTAGCCTTGCATCGCATTGAACAAAACTTTAACCGATTTAGCAAAACGTGGCATCGGTTAATTCATTCATTTGACTTATACTTTCTTGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAA < 1:634659/143‑1 ACTCTTTAGCTAGCCTTGCATCGCATTGAACAAAACTTGAACCGATTTAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAACTACTGTGAAATGTACCAGCGATCTGTTCAATGAAATTATT > 2:144589/1‑143 CTCTTTAGCTAGCCTTGCATCGCATTGAACAAAACTTGAACCGATTTAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTC < 1:588057/143‑1 CTTTAGCTAGCCTTGCATCGCATTGAACAAAACTTGAACGGATTTAGGAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGACTGGGCAACGAATGTGAAAAATACCAGCGATCTGTTCAATAAGATTATTACA > 1:494653/1‑143 TTGCATCGCATTGAACAAAACTTGAAACGATTTAGCAAAACGTAGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCCATGAAATAATCCCATTGGGTCcccta > 1:121233/1‑138 TCGCATTGAACAAAACTTGAACCGATTTAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAACTAATGTGAGCAGTACCAGCGATCTGTTCAATAAAATTATTCAATTGGATCACTTAATACA > 2:209000/1‑143 GCATTGAAACAACCTTTAACCGTTTGAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATA < 1:144589/143‑1 ATTGAACAAAACTTGAACCGATTTAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGACTGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATG < 2:392644/143‑1 AACAATACTTGAACCGATTTAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTA < 1:409200/143‑1 CAAAACTTGAACCGATTTAGCAAAACGTGGCATCGGTTAATTCATTCATTTGACTTATACTTGCCTGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAAT < 2:278720/143‑1 AAACTTGAACCGATTTAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCA < 2:504042/143‑1 CTTGAACCGATTTAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAA < 1:52120/143‑1 TTGAACCGATTTAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATAAGAAG > 2:313618/1‑143 GAACCGATTTAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAACTAATGTGACAAGTACCAGCGATCTGTTCAATGACATTATTACATTGGATCGAGTAATCCATATGGTTAATCAGAAGAA > 2:563863/1‑143 tATTTGGCAAATCGTGGCTTGGGTCATTTCCTTCTTTTGACTTATAATGGGCTGGGCAACTAATGTGAAAAGTACCAGCGATCTTTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATC < 2:601611/142‑1 ATTTAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATA > 2:257879/1‑121 ATTTAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATA < 1:257879/121‑1 AGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTG < 2:140874/143‑1 aacttggacTCGGTCAATTCAGTCATTTGACTTATACTTGCCTGGGCAACTAATGTGAAAAGGACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAA < 1:15612/134‑1 CATCGGTCAATTCATTCATTTGTCTTATACTTGCCTGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTAT < 2:423011/143‑1 ATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAACTAATGTGAAAAGTACCCGCGATCTGTTCACTGAAATTATTCAATAGGGTCGCTTAATCAAAATGATTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATC > 2:4207/1‑143 TCGGTCAATTCATTAATTTGACTTATACTTGCCTGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCT < 1:259973/143‑1 CGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGATAGATCGCCTGCTAAACGAaaaaaga > 2:218913/1‑136 TCATTCATTTGACTTATACTTGCCTGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGTAGCAAGATCGCCTGGTTCACGAGTATCTGTCTCgtct > 2:701560/1‑139 cTTCACTTGACTTATACTGCCCTGGTCAACTCATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTATTCCATATGGTTAATCAGAAGAAATATCGCCTGCTTAACGAGTATCTGTCTCCGCTGG < 1:168353/142‑1 TGAGTTATACTTGCCTGGTCAACTAATGTGAAAAGTACGAGCGGTCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTAC < 2:501646/143‑1 GACTTATACTTGCCTGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCAGCTGGATATTACC > 2:464559/1‑143 TTATACTTGCCTGAGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATACCATTGGGTCGCTTAATCCATATAGTTAATCAGAAGAAAGATCGCCTGATTAACGAGTATCTATCTCATCTAGATATTACaccc > 1:145560/1‑139 ATACTTGCCTGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGTTTAACTAGTATCTGTCTCCGCTGGATATTAaagcgac > 2:257893/1‑136 ATACTTGCCTGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAACCAGAAGAAAGATCGCCTGCTTAACAAGTATCTATATCAGCTAGATATTACCGCGGC > 2:587893/1‑143 TTGCCTGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGCACGCTCGCCTGCTTAACGAGTATCTATCTCAAATGAATATTACAGAGGAACAa > 2:503408/1‑142 TTGCCTGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAACGATCGCGTGCTTAACGAGAATCAGACACAGATGAATATTACCAAAGCACAG > 2:36215/1‑143 CTGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCACAGTTTA < 2:419794/143‑1 TGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAAGCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCACAGTTTAA < 2:347964/143‑1 gaaCAACTAATATTAAAAGTACCAAAGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCACAGTTTAAG < 2:158448/140‑1 GGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCTTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCACAGTTTAAG > 2:385184/1‑143 GCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGGCGCTTAATCAATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTATCAACTGGCTATTACCGCTGCACAGCTTAcgtc > 1:654550/1‑139 GGTTATCAGCGAAAAGTATAAGGGGTAAACAAGGATAAAGTGTCACTCTTTAGCTAGCCTTGCATCGCATTGAACAAAACTTGAACCGATTTAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1618934‑1619079‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggcaaCTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCACAGTTTAAGGT > NC_000913/1619115‑1619253 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |