| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,619,080 | Δ35 bp | intergenic (‑172/‑6) | marC ← / → marR | UPF0056 family inner membrane protein/transcriptional repressor of multiple antibiotic resistance |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1619080 | 1619114 | 35 | 50 [0] | [1] 51 | marC/marR | UPF0056 family inner membrane protein/transcriptional repressor of multiple antibiotic resistance |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1619079 | 0 (0.000) | 47 (1.210) | 44/272 | 0.0 | 99.0% | intergenic (‑171/‑41) | marC/marR | UPF0056 family inner membrane protein/transcriptional repressor of multiple antibiotic resistance |
| ? | NC_000913 | 1619115 = | 1 (0.030) | intergenic (‑207/‑5) | marC/marR | UPF0056 family inner membrane protein/transcriptional repressor of multiple antibiotic resistance | |||||
CGAAAAGTATAAGGGGTAAACAAGGATAAAGTGTCACTCTTTAGCTAGCCTTGCATCGCATTGAACAAAACTTGAACCGATTTAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTG > NC_000913/1618943‑1619218 | cGAAAAGTATAAGGGGTAAACAAGGATAAAGTGTCACTCTTTAGCTAGCCTTGCATCGCATTGAACAAAACTTGAACCGATTTAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGCGCAActaatg > 1:632523‑M1/1‑137 (MQ=255) gAAAAGTATAAGGGGTAAACAAGGATAAAGTGTCACTCTTTAGCTAGCCTTGCATCGCATTGAACAAATCTTGAACCGATTTAGCAAAACATAGCAACAGACAATTCATTAATTTGACTTATACTTGCCTGGGCAActaatgt > 2:20732‑M1/1‑136 (MQ=255) gAAAAGTATAAGGGGTAAACAAGGATAAAGTGTCACTCTTTAGCTAGCCTTGCATCGCATTGAACAAAACTTGAACCGATTTAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAActaatgt < 1:716689‑M1/143‑8 (MQ=255) aaaaGTATAAGGGGTAAACAAGGATAAAGTGTCACTCTTTAGCTAGCCTTGCATCGCATTGAACAAAACTTGAACCGATTTAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTCCCTGGGCAActaatgtg > 1:30011‑M1/1‑135 (MQ=255) gTATAAGGGGTAAACAAGGATAAAGTGTCACTCTTTAGCTAGCCTTGCATCGCATTGAACAAAACTTGAACCGATTTAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAActaatgtgaaaa < 2:374332‑M1/143‑13 (MQ=255) ataAGGGGTAAACAAGGATAAAGTGTCACTCTTTAGCTAGCCTTGCATCGCATTGAACAAAACTTGAACCGATTTAGCAAAACGTGGCATCGGTCACTTCATTCATTTGACTTTTACTTGCCTGGGCAActaatgtgaaaagt > 2:43697‑M1/1‑129 (MQ=255) taAGGGGTAAACAAGGATAAAGTGTCACTCTTTAGCTAGCCTTGCATCGCATTGAACAAAACTTGAACCGATTTAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAActaatgtgaaaagta > 1:140874‑M1/1‑128 (MQ=255) gggTAAACAAGGATAAAGTGTCACTCTTTAGCTAGCCTTGCATCGCATTGAACAAAACTTGAACCGATTTAGCAAAACGTGGCATCGGTCAATTCATTCCTTTGACTTATACTTGCCTGGCCAAcacatgtgcaaagtacaaa > 2:114271‑M1/1‑124 (MQ=255) aCAAGGATAAAGTGTCACTCTTTAGCTAGCCTTGCATCGCATTGAACAAAACTTGAACCGATTTAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAActaatgtgaaaagtaccagcgatct < 1:256702‑M1/143‑26 (MQ=255) gATAAAGTGTCACTCTTTAGCTAGCCTTGCATCGCATTGAACAAAACTTGAACCGATTTAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAActaatgtgaaaagtaccagcgatctgttca > 1:419794‑M1/1‑113 (MQ=255) tAATGTGTCACTCTTTAGCTAGCCTTGCATCGCATTGAACAAAACTTGAACCGAGATAGCAAAACGTGGCATCGGGCAATTCATTCATTTGACTTATACTTGCCTGGGCAActaatgtgaaaagtaccagcgatctgttcaat < 2:84585‑M1/143‑33 (MQ=255) aaaGTGTCACTCTTTAGCTAGCCTTGCATCGCATTGAACAAAACTTGAACCGCTTTCGCAAAACGTCGCATCGTTCAATTCATTCATTTGACTTATACATACCTGGGCAActaatgtgaaaagtaccagcgatctgttcaatg > 2:147488‑M1/1‑110 (MQ=255) tgtgtcTCTCTTTAGTTAGCCTTGCATCGCATTGAATAAAACTTGAACCGATTTAGCAAAACGTGGCATCGGTCAATGCATTCATTTGACTTATACTTGCCTGGGCAActaatgtgaaaagtaccagcgatctgttcaatgaa < 2:240399‑M1/142‑36 (MQ=255) gtgtCACTCTTTAGCTAGCCTTGCATCGCATTGAACAAAACTTTAACCGATTTAGCAAAACGTGGCATCGGTTAATTCATTCATTTGACTTATACTTTCTTGGGCAActaatgtgaaaagtaccagcgatctgttcaatgaaa < 1:634659‑M1/143‑37 (MQ=255) aCTCTTTAGCTAGCCTTGCATCGCATTGAACAAAACTTGAACCGATTTAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAActactgtgaaatgtaccagcgatctgttcaatgaaattatt > 2:144589‑M1/1‑102 (MQ=255) ctctTTAGCTAGCCTTGCATCGCATTGAACAAAACTTGAACCGATTTAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAActaatgtgaaaagtaccagcgatctgttcaatgaaattattc < 1:588057‑M1/143‑43 (MQ=255) ctTTAGCTAGCCTTGCATCGCATTGAACAAAACTTGAACGGATTTAGGAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGACTGGGCAAcgaatgtgaaaaataccagcgatctgttcaataagattattaca > 1:494653‑M1/1‑99 (MQ=255) ttGCATCGCATTGAACAAAACTTGAAACGATTTAGCAAAACGTAGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAActaatgtgaaaagtaccagcgatctgttccatgaaataatcccattgggtccccta > 1:121233‑M1/1‑87 (MQ=255) tCGCATTGAACAAAACTTGAACCGATTTAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAActaatgtgagcagtaccagcgatctgttcaataaaattattcaattggatcacttaataca > 2:209000‑M1/1‑82 (MQ=255) gCATTGAAACAACCTTTAACCGTTTGAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAActaatgtgaaaagtaccagcgatctgttcaatgaaattattccattgggtcgcttaatccata < 1:144589‑M1/143‑64 (MQ=255) aTTGAACAAAACTTGAACCGATTTAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGACTGGGCAActaatgtgaaaagtaccagcgatctgttcaatgaaattattccattgggtcgcttaatccatatg < 2:392644‑M1/143‑66 (MQ=255) aaCAATACTTGAACCGATTTAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAActaatgtgaaaagtaccagcgatctgttcaatgaaattattccattgggtcgcttaatccatatggtta < 1:409200‑M1/143‑70 (MQ=255) cAAAACTTGAACCGATTTAGCAAAACGTGGCATCGGTTAATTCATTCATTTGACTTATACTTGCCTGGGCAActaatgtgaaaagtaccagcgatctgttcaatgaaattattccattgggtcgcttaatccatatggttaat < 2:278720‑M1/143‑72 (MQ=255) aaaCTTGAACCGATTTAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAActaatgtgaaaagtaccagcgatctgttcaatgaaattattccattgggtcgcttaatccatatggttaatca < 2:504042‑M1/143‑74 (MQ=255) cTTGAACCGATTTAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAActaatgtgaaaagtaccagcgatctgttcaatgaaattattccattgggtcgcttaatccatatggttaatcagaa < 1:52120‑M1/143‑77 (MQ=255) ttGAACCGATTTAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAActaatgtgaaaagtaccagcgatctgttcaatgaaattattccattgggtcgcttaatccatatggttaataagaag > 2:313618‑M1/1‑66 (MQ=255) gAACCGATTTAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAActaatgtgacaagtaccagcgatctgttcaatgacattattacattggatcgagtaatccatatggttaatcagaagaa > 2:563863‑M1/1‑64 (MQ=255) tatTTGGCAAATCGTGGCTTGGGTCATTTCCTTCTTTTGACTTATAATGGGCTGGGCAActaatgtgaaaagtaccagcgatcttttcaatgaaattattccattgggtcgcttaatccatatggttaatcagaagaaagatc < 2:601611‑M1/142‑85 (MQ=255) aTTTAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAActaatgtgaaaagtaccagcgatctgttcaatgaaattattccattgggtcgcttaatccata < 1:257879‑M1/121‑64 (MQ=255) aTTTAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAActaatgtgaaaagtaccagcgatctgttcaatgaaattattccattgggtcgcttaatccata > 2:257879‑M1/1‑58 (MQ=255) aGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAActaatgtgaaaagtaccagcgatctgttcaatgaaattattccattgggtcgcttaatccatatggttaatcagaagaaagatcgcctg < 2:140874‑M1/143‑90 (MQ=255) aacttggactcggtcaattCAGTCATTTGACTTATACTTGCCTGGGCAActaatgtgaaaaggaccagcgatctgttcaatgaaattattccattgggtcgcttaatccatatggttaatcagaagaaagatcgcctgcttaa < 1:15612‑M1/134‑95 (MQ=255) cATCGGTCAATTCATTCATTTGTCTTATACTTGCCTGGGCAActaatgtgaaaagtaccagcgatctgttcaatgaaattattccattgggtcgcttaatccatatggttaatcagaagaaagatcgcctgcttaacgagtat < 2:423011‑M1/143‑102 (MQ=255) aTCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAActaatgtgaaaagtacccgcgatctgttcactgaaattattcaatagggtcgcttaatcaaaatgattaatcagaagaaagatcgcctgcttaacgagtatc > 2:4207‑M1/1‑41 (MQ=255) tCGGTCAATTCATTAATTTGACTTATACTTGCCTGGGCAActaatgtgaaaagtaccagcgatctgttcaatgaaattattccattgggtcgcttaatccatatggttaatcagaagaaagatcgcctgcttaacgagtatct < 1:259973‑M1/143‑104 (MQ=255) cGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAActaatgtgaaaagtaccagcgatctgttcaatgaaattattccattgggtcgcttaatccatatggttaatcagaagatagatcgcctgctaaacgaaaaaaga > 2:218913‑M1/1‑39 (MQ=255) tcattcatTTGACTTATACTTGCCTGGGCAActaatgtgaaaagtaccagcgatctgttcaatgaaattattccattgggtcgcttaatccatatggttaatcagtagcaagatcgcctggttcacgagtatctgtctcgtct > 2:701560‑M1/1‑31 (MQ=255) cttcacttGACTTATACTGCCCTGGTCAActcatgtgaaaagtaccagcgatctgttcaatgaaattattccattgggtcgcttattccatatggttaatcagaagaaatatcgcctgcttaacgagtatctgtctccgctgg < 1:168353‑M1/142‑115 (MQ=255) tGAGTTATACTTGCCTGGTCAActaatgtgaaaagtacgagcggtctgttcaatgaaattattccattgggtcgcttaatccatatggttaatcagaagaaagatcgcctgcttaacgagtatctgtctccgctggatattac < 2:501646‑M1/143‑122 (MQ=255) gACTTATACTTGCCTGGGCAActaatgtgaaaagtaccagcgatctgttcaatgaaattattccattgggtcgcttaatccatatggttaatcagaagaaagatcgcctgcttaacgagtatctgtctcagctggatattacc > 2:464559‑M1/1‑21 (MQ=255) ttATACTTGCCTGAGCAActaatgtgaaaagtaccagcgatctgttcaatgaaattataccattgggtcgcttaatccatatagttaatcagaagaaagatcgcctgattaacgagtatctatctcatctagatattacaccc > 1:145560‑M1/1‑18 (MQ=255) ataCTTGCCTGGGCAActaatgtgaaaagtaccagcgatctgttcaatgaaattattccattgggtcgcttaatccatatggttaatcagaagaaagatcgcctgtttaactagtatctgtctccgctggatattaaagcgac > 2:257893‑M1/1‑16 (MQ=255) ataCTTGCCTGGGCAActaatgtgaaaagtaccagcgatctgttcaatgaaattattccattgggtcgcttaatccatatggttaaccagaagaaagatcgcctgcttaacaagtatctatatcagctagatattaccgcggc > 2:587893‑M1/1‑16 (MQ=255) ttGCCTGGGCAActaatgtgaaaagtaccagcgatctgttcaatgaaattattccattgggtcgcttaatccatatggttaatcagaagcacgctcgcctgcttaacgagtatctatctcaaatgaatattacagaggaacaa > 2:503408‑M1/1‑12 (MQ=255) ttGCCTGGGCAActaatgtgaaaagtaccagcgatctgttcaatgaaattattccattgggtcgcttaatccatatggttaatcagaagaacgatcgcgtgcttaacgagaatcagacacagatgaatattaccaaagcacag > 2:36215‑M1/1‑12 (MQ=255) cTGGGCAActaatgtgaaaagtaccagcgatctgttcaatgaaattattccattgggtcgcttaatccatatggttaatcagaagaaagatcgcctgcttaacgagtatctgtctccgctggatattaccgcggcacagttta < 2:419794‑M1/143‑136 (MQ=255) tGGGCAActaatgtgaaaagtaccagcgatctgttcaatgaaattattccattgggtcgcttaatccatatggttaagcagaagaaagatcgcctgcttaacgagtatctgtctccgctggatattaccgcggcacagtttaa < 2:347964‑M1/143‑137 (MQ=255) gggCAActaatgtgaaaagtaccagcgatctgttcaatgaaattattccattgggtcgcttaatccatatggttaatcagaagaaagatcgcttgcttaacgagtatctgtctccgctggatattaccgcggcacagtttaag > 2:385184‑M1/1‑6 (MQ=255) gaacaactaatattaaaagtaccaaagatctgttcaatgaaattattccattgggtcgcttaatccatatggttaatcagaagaaagatcgcctgcttaacgagtatctgtctccgctggatattaccgcggcacagtttaag < 2:158448‑M1/140‑138 (MQ=255) gCAActaatgtgaaaagtaccagcgatctgttcaatgaaattattccattggggcgcttaatcaatatggttaatcagaagaaagatcgcctgcttaacgagtatctgtatcaactggctattaccgctgcacagcttacgtc > 1:654550‑M1/1‑4 (MQ=255) | CGAAAAGTATAAGGGGTAAACAAGGATAAAGTGTCACTCTTTAGCTAGCCTTGCATCGCATTGAACAAAACTTGAACCGATTTAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTG > NC_000913/1618943‑1619218 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |